mRNA_F-distichus_contig10317.283.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10317.283.1
Unique NamemRNA_F-distichus_contig10317.283.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig10317.283.1 vs. uniprot
Match: A0A6H5KP75_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KP75_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 1.100e-23
Identity = 113/272 (41.54%), Postives = 139/272 (51.10%), Query Frame = 1 
Query:   61 SAAILIPIVAFVGICCXWRRRKQKQRVGKTP---VSISACGCQDAHERMREQFTLEDGTPTDENGDLEVGDGYESGAASPHDSLVAGSAPKDGLGFLIAASAKGDSSSSRTLELSAEDLKVLSETTAATAPENLSATPAGGVAPPASTGTSDDDDSSWGGRSDAENPGALRRSGSNSSISTLDSTSTASSTWPGSVGFVTPARTDISRGGGSGRPSGRSRGHSSSASGGNMDSFSSGFRTPASLAAATPGRAE--PDTPSPRSGSGSNHGTP 861
            +AAILIP    VG+ C +RRRK+K+   K P   V   + G         + FT  +    + NG+             PH   +  +AP    G   A      ++++ T+  SAE L       A  AP   +A PAG   P A T   DDDDSS   RSD ENPG LRR+GSNSSISTL STSTASSTWP   GFVTPAR +I RG G GR                 +    G++TP +L+AATP R    P+TPSPRS S S HGTP
Sbjct:  599 TAAILIPGFVLVGLFCCYRRRKRKEGELKRPSAAVGAGSGGXXXXXXXXXDSFTSSENN-VEANGEGPTDTLANKPLVKPH--ALQSTAPM--TGGQQAGGEAATAATAATVGDSAEGLPRPPTAAAVMAPG--AAIPAG--TPAAGTAGGDDDDSS---RSDLENPGRLRRTGSNSSISTLGSTSTASSTWPND-GFVTPARNNIPRGAGGGRYG------LGXXXXXXXEGLPPGYKTPGNLSAATPNREMTIPETPSPRSVSSSVHGTP 851
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10317.283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KP75_9PHAE1.100e-2341.54Protein kinase domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10317contigF-distichus_contig10317:872..2655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue1.4e-20
Seed eggNOG ortholog2880.D7FZX4
Preferred nameRCCD1
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG0515@1,COG5184@1,KOG0192@2759,KOG1426@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size865
Cds size864
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928949.6548507-CDS-F-distichus_contig10317:871..15151622928949.6548507-CDS-F-distichus_contig10317:871..1515Fucus distichus monoicousCDSF-distichus_contig10317 872..1515 -
1690885079.0967383-CDS-F-distichus_contig10317:871..15151690885079.0967383-CDS-F-distichus_contig10317:871..1515Fucus distichus monoicousCDSF-distichus_contig10317 872..1515 -
1622928949.674066-CDS-F-distichus_contig10317:2435..26551622928949.674066-CDS-F-distichus_contig10317:2435..2655Fucus distichus monoicousCDSF-distichus_contig10317 2436..2655 -
1690885079.1091483-CDS-F-distichus_contig10317:2435..26551690885079.1091483-CDS-F-distichus_contig10317:2435..2655Fucus distichus monoicousCDSF-distichus_contig10317 2436..2655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10317.283.1prot_F-distichus_contig10317.283.1Fucus distichus monoicouspolypeptideF-distichus_contig10317 872..2655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10317.283.1

>prot_F-distichus_contig10317.283.1 ID=prot_F-distichus_contig10317.283.1|Name=mRNA_F-distichus_contig10317.283.1|organism=Fucus distichus monoicous|type=polypeptide|length=288bp
FPSSEDSGGGGNGSTMIGIVSAAILIPIVAFVGICCCWRRRKQKQRVGKT
PVSISACGCQDAHERMREQFTLEDGTPTDENGDLEVGDGYESGAASPHDS
LVAGSAPKDGLGFLIAASAKGDSSSSRTLELSAEDLKVLSETTAATAPEN
LSATPAGGVAPPASTGTSDDDDSSWGGRSDAENPGALRRSGSNSSISTLD
STSTASSTWPGSVGFVTPARTDISRGGGSGRPSGRSRGHSSSASGGNMDS
FSSGFRTPASLAAATPGRAEPDTPSPRSGSGSNHGTPH
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mRNA from alignment at F-distichus_contig10317:872..2655-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10317.283.1 ID=mRNA_F-distichus_contig10317.283.1|Name=mRNA_F-distichus_contig10317.283.1|organism=Fucus distichus monoicous|type=mRNA|length=1784bp|location=Sequence derived from alignment at F-distichus_contig10317:872..2655- (Fucus distichus monoicous)
TTTCCCTCTTCTGAAGACTCTGGTGGCGGAGGCAATGGGAGCACCATGAT
TGGAATCGTGAGCGCAGCCATCCTGATCCCCATCGTGGCTTTCGTGGGCA
TCTGTTGCTGCTGGCGAAGACGCAAGCAGAAGCAACGGGTCGGGAAGACG
CCCGTATCCATCTCGGCGTGTGGGTGCCAGGACGCCCACGAGCGAATGCG
AGAGCAGTTCACCTTAGAAGGTATGATAGCCGCAAAATCACCTTTTGTTT
TTGTTTTTGAGTGTACCTTTCATGAAACGTTTTTGGTTCGAGCGTACGTT
TTATGAAAAGAAAAAAGAAAAATATTCGAGTAGTCTTAAACCTTCCGTAA
GAATGGATTTATTTATTTTTGTGAAGTTAGGTATTCGTGACAAGAATGCA
CTTGTTTTCAGTATCCTGATGATTTCTTGAGGAAATTACATTTTTAGGAT
ACCTCACCTTTCATGGGGAATTATATCCTTTAAAACGAAAGTGTATCCGT
AAAAGATTTTTTAAAGAAGAGCGTACCAGTACCTTTTATGGAAGTACCTT
TATGAAAGTACCTTTTTATGGTAGTTGTATGAGTAGTGTATCTTTTTTTG
TTCCTTTCTTTTCATTTGTGTCCCCTTAACCGCCTTCTGCACATGGATTG
TCGGAAAGGGATGTCCTCGTACGTTGTACGTTCTCTTTGATTCATGCGGA
AGTATAATGTGTAGCTAGCTCCACAGCATTACCGTATAATAGCGTTCAGT
GCCGTTTCCTCCCGTTAAAGACCTAAAAAGGTGTTTTGCCAGACACGTTT
TGTGTCCTGTCCGCAAGGTGTCTTATTTATTTTGTGCTTTTATATTCGTA
TTTAGTTGGTTTGCCTTGCTGGGTATGACATGCCTATACTTCTTTTGTTT
CATACCTTGCACGAAAAAATAAATATATATATATATATACACATCAGTCA
AGCTGGCCCGGTCATATATAATGCGACCGTGGCGTGTTTCCAAAAAACTA
ACGCTTGAAAATTGATTTGACGCAAGAGATTGTTTCTCGCAGTTCCGAAA
ATATTTCATCGCGCGCATCGTTCAAACTGCCAACGAACCCGCCAATCCCG
CCAATCTTACAGTATCTCGTCTCTTCGTCGCATCCCACAGACGGAACTCC
AACCGACGAAAACGGCGACCTCGAAGTGGGAGACGGATACGAATCAGGCG
CTGCTAGCCCACATGACTCTTTAGTGGCCGGATCTGCCCCCAAGGATGGT
CTCGGGTTCCTGATCGCCGCTTCCGCGAAAGGTGATTCTTCTTCCTCCCG
CACGTTGGAATTGTCGGCGGAGGACCTTAAGGTTCTCTCTGAGACGACCG
CAGCCACCGCGCCGGAAAACTTGTCGGCAACACCCGCTGGAGGAGTGGCG
CCCCCGGCCTCCACTGGGACATCGGACGACGACGACTCCTCGTGGGGCGG
GCGGTCCGATGCGGAGAACCCGGGGGCTCTGCGTCGGAGCGGGTCGAACT
CGTCGATCAGCACGCTCGATTCCACCTCGACCGCATCGTCCACGTGGCCC
GGGAGCGTCGGGTTCGTGACCCCGGCGAGAACGGACATCTCGCGCGGAGG
TGGCTCGGGCAGACCTTCCGGGCGGAGCAGGGGTCACTCGAGCTCGGCGA
GCGGCGGCAACATGGATTCGTTTTCGTCAGGGTTTCGTACGCCAGCGTCG
CTCGCGGCAGCTACACCGGGAAGGGCGGAGCCAGACACGCCGTCGCCTCG
ATCGGGAAGCGGCTCTAATCATGGCACGCCGCAC
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Coding sequence (CDS) from alignment at F-distichus_contig10317:872..2655-

>mRNA_F-distichus_contig10317.283.1 ID=mRNA_F-distichus_contig10317.283.1|Name=mRNA_F-distichus_contig10317.283.1|organism=Fucus distichus monoicous|type=CDS|length=1728bp|location=Sequence derived from alignment at F-distichus_contig10317:872..2655- (Fucus distichus monoicous)
TTTCCCTCTTCTGAAGACTCTGGTGGCGGAGGCAATGGGAGCACCATGAT
TGGAATCGTGAGCGCAGCCATCCTGATCCCCATCGTGGCTTTCGTGGGCA
TCTGTTGCTGCTGGCGAAGACGCAAGCAGAAGCAACGGGTCGGGAAGACG
CCCGTATCCATCTCGGCGTGTGGGTGCCAGGACGCCCACGAGCGAATGCG
AGAGCAGTTCACCTTAGAAGTTTCCCTCTTCTGAAGACTCTGGTGGCGGA
GGCAATGGGAGCACCATGATTGGAATCGTGAGCGCAGCCATCCTGATCCC
CATCGTGGCTTTCGTGGGCATCTGTTGCTGCTGGCGAAGACGCAAGCAGA
AGCAACGGGTCGGGAAGACGCCCGTATCCATCTCGGCGTGTGGGTGCCAG
GACGCCCACGAGCGAATGCGAGAGCAGTTCACCTTAGAAGACGGAACTCC
AACCGACGAAAACGGCGACCTCGAAGTGGGAGACGGATACGAATCAGGCG
CTGCTAGCCCACATGACTCTTTAGTGGCCGGATCTGCCCCCAAGGATGGT
CTCGGGTTCCTGATCGCCGCTTCCGCGAAAGGTGATTCTTCTTCCTCCCG
CACGTTGGAATTGTCGGCGGAGGACCTTAAGGTTCTCTCTGAGACGACCG
CAGCCACCGCGCCGGAAAACTTGTCGGCAACACCCGCTGGAGGAGTGGCG
CCCCCGGCCTCCACTGGGACATCGGACGACGACGACTCCTCGTGGGGCGG
GCGGTCCGATGCGGAGAACCCGGGGGCTCTGCGTCGGAGCGGGTCGAACT
CGTCGATCAGCACGCTCGATTCCACCTCGACCGCATCGTCCACGTGGCCC
GGGAGCGTCGGGTTCGTGACCCCGGCGAGAACGGACATCTCGCGCGGAGG
TGGCTCGGGCAGACCTTCCGGGCGGAGCAGGGGTCACTCGAGCTCGGCGA
GCGGCGGCAACATGGATTCGTTTTCGTCAGGGTTTCGTACGCCAGCGTCG
CTCGCGGCAGCTACACCGGGAAGGGCGGAGCCAGACACGCCGTCGCCTCG
ATCGGGAAGCGGCTCTAATCATGGCACGCCGCACACGGAACTCCAACCGA
CGAAAACGGCGACCTCGAAGTGGGAGACGGATACGAATCAGGCGCTGCTA
GCCCACATGACTCTTTAGTGGCCGGATCTGCCCCCAAGGATGGTCTCGGG
TTCCTGATCGCCGCTTCCGCGAAAGGTGATTCTTCTTCCTCCCGCACGTT
GGAATTGTCGGCGGAGGACCTTAAGGTTCTCTCTGAGACGACCGCAGCCA
CCGCGCCGGAAAACTTGTCGGCAACACCCGCTGGAGGAGTGGCGCCCCCG
GCCTCCACTGGGACATCGGACGACGACGACTCCTCGTGGGGCGGGCGGTC
CGATGCGGAGAACCCGGGGGCTCTGCGTCGGAGCGGGTCGAACTCGTCGA
TCAGCACGCTCGATTCCACCTCGACCGCATCGTCCACGTGGCCCGGGAGC
GTCGGGTTCGTGACCCCGGCGAGAACGGACATCTCGCGCGGAGGTGGCTC
GGGCAGACCTTCCGGGCGGAGCAGGGGTCACTCGAGCTCGGCGAGCGGCG
GCAACATGGATTCGTTTTCGTCAGGGTTTCGTACGCCAGCGTCGCTCGCG
GCAGCTACACCGGGAAGGGCGGAGCCAGACACGCCGTCGCCTCGATCGGG
AAGCGGCTCTAATCATGGCACGCCGCAC
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