mRNA_F-distichus_contig103152.281.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig103152.281.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT) HSP 1 Score: 90.5 bits (223), Expect = 8.500e-19 Identity = 44/116 (37.93%), Postives = 72/116 (62.07%), Query Frame = 1
Query: 4 YKCRFVAKGFRQIKGIHYQESSSPTHTKSSLRMALAVMALLDWERRQLDVEMTFLEADVTVELYVDLPDGYR--DSPNQVERLQQAMHGLMHAGLLWAKTFGGELITKGFERSQAD 345
+K R VA+G+ Q +GI Y E SP +S+R LA+ +LDWE Q+DV FL+ D+T E+Y+ P+GYR ++P+ V +L+++++GL + W T L + G+++ AD
Sbjct: 896 FKARLVAQGYSQTEGIDYNEVFSPVVRNTSIRSLLALANILDWEIHQMDVRTAFLQGDLTDEIYMKQPEGYRSKENPDHVCKLKKSLYGLKQSARCWNSTLDSFLKSSGYKQVGAD 1011
BLAST of mRNA_F-distichus_contig103152.281.1 vs. uniprot
Match: A0A151TV63_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TV63_CAJCA) HSP 1 Score: 86.3 bits (212), Expect = 7.860e-18 Identity = 44/116 (37.93%), Postives = 70/116 (60.34%), Query Frame = 1
Query: 4 YKCRFVAKGFRQIKGIHYQESSSPTHTKSSLRMALAVMALLDWERRQLDVEMTFLEADVTVELYVDLPDGY--RDSPNQVERLQQAMHGLMHAGLLWAKTFGGELITKGFERSQAD 345
YK R V KGFRQIKG+ + E SP SS+R L+++A LD E Q+DV+ TFL ++ E+Y+ PDG+ + V RL+++++GL W K F + +G++++ +D
Sbjct: 108 YKARLVVKGFRQIKGVDFNEIFSPVVKMSSIRTVLSLIATLDLEVEQMDVKTTFLHGNLEEEIYMKQPDGFLVEGKEDYVCRLRKSLYGLKQVPRQWYKKFESFMCEQGYKKTTSD 223
BLAST of mRNA_F-distichus_contig103152.281.1 vs. uniprot
Match: A0A2N9FLV5_FAGSY (Uncharacterized protein n=3 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FLV5_FAGSY) HSP 1 Score: 87.4 bits (215), Expect = 1.020e-17 Identity = 45/116 (38.79%), Postives = 65/116 (56.03%), Query Frame = 1
Query: 4 YKCRFVAKGFRQIKGIHYQESSSPTHTKSSLRMALAVMALLDWERRQLDVEMTFLEADVTVELYVDLPDGYRDS--PNQVERLQQAMHGLMHAGLLWAKTFGGELITKGFERSQAD 345
+K R VA+G+ Q GI Y E+ SP +++R L V + W RQ+DV FL +T ++Y+ P G++D PN V RL++A++GL A W T LI GF S+AD
Sbjct: 959 FKARLVARGYHQRPGIDYTETFSPVVKPATIRSVLTVAVMQGWTLRQMDVNNAFLHGQITEDVYMSQPPGFKDQSKPNHVCRLRKAIYGLKQAPRAWYSTLKDALIHLGFHNSKAD 1074
BLAST of mRNA_F-distichus_contig103152.281.1 vs. uniprot
Match: G8DCY4_PHAVU (Putative gag/pol polyprotein n=1 Tax=Phaseolus vulgaris TaxID=3885 RepID=G8DCY4_PHAVU) HSP 1 Score: 86.3 bits (212), Expect = 2.610e-17 Identity = 45/116 (38.79%), Postives = 69/116 (59.48%), Query Frame = 1
Query: 4 YKCRFVAKGFRQIKGIHYQESSSPTHTKSSLRMALAVMALLDWERRQLDVEMTFLEADVTVELYVDLPDGY--RDSPNQVERLQQAMHGLMHAGLLWAKTFGGELITKGFERSQAD 345
YK R V KGFRQ KGI + E SP SS+R+ L++ A LD E Q+DV+ FL D+ E+Y+ PDG+ + V RL+++++GL A W K F + +G++++ +D
Sbjct: 818 YKARLVVKGFRQRKGIDFNEIFSPVVKMSSIRIVLSLAATLDLEVEQMDVKTAFLHGDLEEEIYMKQPDGFLVEGKEDHVCRLRKSLYGLKQAPRQWYKKFESVMCEQGYKKTTSD 933
BLAST of mRNA_F-distichus_contig103152.281.1 vs. uniprot
Match: A0A151UCJ4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151UCJ4_CAJCA) HSP 1 Score: 85.5 bits (210), Expect = 2.790e-17 Identity = 44/116 (37.93%), Postives = 69/116 (59.48%), Query Frame = 1
Query: 4 YKCRFVAKGFRQIKGIHYQESSSPTHTKSSLRMALAVMALLDWERRQLDVEMTFLEADVTVELYVDLPDGY--RDSPNQVERLQQAMHGLMHAGLLWAKTFGGELITKGFERSQAD 345
YK R V KGFRQ KG+ + E SP +S+R L++ A LD E Q+DV+ TFL D+ E+Y+ PDG+ + V RL+++++GL A W K F + +G++++ +D
Sbjct: 50 YKARLVVKGFRQRKGVDFNEIFSPVVRMTSIRTVLSLAATLDLEVEQMDVKTTFLHGDLEEEIYMKQPDGFLIEGKEDYVCRLRKSLYGLKQAPRQWYKKFESVMCEQGYKKTTSD 165
BLAST of mRNA_F-distichus_contig103152.281.1 vs. uniprot
Match: A0A6A2XDJ5_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2XDJ5_HIBSY) HSP 1 Score: 85.9 bits (211), Expect = 3.540e-17 Identity = 45/116 (38.79%), Postives = 71/116 (61.21%), Query Frame = 1
Query: 4 YKCRFVAKGFRQIKGIHYQESSSPTHTKSSLRMALAVMALLDWERRQLDVEMTFLEADVTVELYVDLPDGYR--DSPNQVERLQQAMHGLMHAGLLWAKTFGGELITKGFERSQAD 345
YK R VAKG+ Q +G+ Y E SP SS+R+ LA++ALLD E Q+DV+ FL D+ E+Y+ PDG++ + V +L+++++GL + W K F +I + + RS+ D
Sbjct: 845 YKARLVAKGYAQTEGVDYNEVFSPVVKHSSIRILLALVALLDLELVQMDVKTAFLHGDMDEEIYMTQPDGFKVAEKEEMVCKLEKSLYGLKQSPRQWYKRFDKFMIGQKYTRSKYD 960
BLAST of mRNA_F-distichus_contig103152.281.1 vs. uniprot
Match: A0A2Z6NTG1_TRISU (Integrase catalytic domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NTG1_TRISU) HSP 1 Score: 85.5 bits (210), Expect = 4.840e-17 Identity = 45/115 (39.13%), Postives = 69/115 (60.00%), Query Frame = 1
Query: 7 KCRFVAKGFRQIKGIHYQESSSPTHTKSSLRMALAVMALLDWERRQLDVEMTFLEADVTVELYVDLPDGY--RDSPNQVERLQQAMHGLMHAGLLWAKTFGGELITKGFERSQAD 345
K R V KGFRQ KG+ + E SP SS+R LA+ A LD E Q+DV+ TFL D+ E+Y+ PDG+ + + V RL+++++GL A W K F + +G++++ +D
Sbjct: 635 KARLVVKGFRQRKGVDFNEIFSPVVKMSSIRTVLALAATLDLEVEQMDVKTTFLHGDLEEEIYMKQPDGFLVKGKEDYVCRLRKSLYGLKQAPRQWYKKFESVMSEQGYKKTTSD 749
BLAST of mRNA_F-distichus_contig103152.281.1 vs. uniprot
Match: A0A438H299_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438H299_VITVI) HSP 1 Score: 84.3 bits (207), Expect = 1.220e-16 Identity = 43/116 (37.07%), Postives = 71/116 (61.21%), Query Frame = 1
Query: 4 YKCRFVAKGFRQIKGIHYQESSSPTHTKSSLRMALAVMALLDWERRQLDVEMTFLEADVTVELYVDLPDGYRDS--PNQVERLQQAMHGLMHAGLLWAKTFGGELITKGFERSQAD 345
YK R VAKG+ Q +GI + E+ SP TK S R+ + ++A D E Q+DV+ TFL D++ E+Y+ P+G++++ N V RL+++++GL A W F + + GF ++ D
Sbjct: 742 YKARLVAKGYTQREGIDFTETFSPVSTKDSFRLVMVLVAHFDLELHQMDVKTTFLNGDLSEEVYMSQPEGFKENGKENMVCRLKRSIYGLKQASRQWYLKFDKIVTSFGFIENKFD 857
BLAST of mRNA_F-distichus_contig103152.281.1 vs. uniprot
Match: A0A5H2XTU8_PRUDU (RmlC-like cupins superfamily protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2XTU8_PRUDU) HSP 1 Score: 84.0 bits (206), Expect = 1.590e-16 Identity = 45/115 (39.13%), Postives = 65/115 (56.52%), Query Frame = 1
Query: 4 YKCRFVAKGFRQIKGIHYQESSSPTHTKSSLRMALAVMALLDWERRQLDVEMTFLEADVTVELYVDLPDGY-RDSPNQVERLQQAMHGLMHAGLLWAKTFGGELITKGFERSQAD 345
YK R VAKG++Q++GI Y ++ SPT ++R LA+ A DW QLDV FL D+ E+Y+ P G R N V RL ++++GL A W F + T + +S+AD
Sbjct: 191 YKARLVAKGYKQLEGIDYHDTFSPTAKMITVRCLLALAAAQDWSLHQLDVNNAFLHGDLHEEIYMSPPPGLQRQGENLVCRLNKSLYGLKQASRQWFAKFSTAIQTAEYVQSKAD 305
BLAST of mRNA_F-distichus_contig103152.281.1 vs. uniprot
Match: A0A2N9J5N8_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J5N8_FAGSY) HSP 1 Score: 84.0 bits (206), Expect = 1.650e-16 Identity = 41/116 (35.34%), Postives = 68/116 (58.62%), Query Frame = 1
Query: 4 YKCRFVAKGFRQIKGIHYQESSSPTHTKSSLRMALAVMALLDWERRQLDVEMTFLEADVTVELYVDLPDGYRDS--PNQVERLQQAMHGLMHAGLLWAKTFGGELITKGFERSQAD 345
+K R VAKGF Q+ G+ Y E+ SP + +R+ L++ W RQ+D++ FL +++ E+++ P GY+ S PN V +LQ+A++GL A W +L+ GF S++D
Sbjct: 570 HKARLVAKGFHQLFGVDYDETYSPVIKPTMVRIVLSIALSSGWSFRQIDIQNAFLHGNLSEEVFMSQPPGYKHSLYPNHVCKLQRAIYGLKQAPRAWFSHLSNKLLDLGFHGSRSD 685 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig103152.281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig103152.281.1 >prot_F-distichus_contig103152.281.1 ID=prot_F-distichus_contig103152.281.1|Name=mRNA_F-distichus_contig103152.281.1|organism=Fucus distichus monoicous|type=polypeptide|length=115bp MYKCRFVAKGFRQIKGIHYQESSSPTHTKSSLRMALAVMALLDWERRQLDback to top mRNA from alignment at F-distichus_contig103152:64..408- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig103152.281.1 ID=mRNA_F-distichus_contig103152.281.1|Name=mRNA_F-distichus_contig103152.281.1|organism=Fucus distichus monoicous|type=mRNA|length=345bp|location=Sequence derived from alignment at F-distichus_contig103152:64..408- (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig103152:64..408- >mRNA_F-distichus_contig103152.281.1 ID=mRNA_F-distichus_contig103152.281.1|Name=mRNA_F-distichus_contig103152.281.1|organism=Fucus distichus monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at F-distichus_contig103152:64..408- (Fucus distichus monoicous)back to top |