mRNA_F-distichus_contig103152.281.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig103152.281.1
Unique NamemRNA_F-distichus_contig103152.281.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig103152.281.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT)

HSP 1 Score: 90.5 bits (223), Expect = 8.500e-19
Identity = 44/116 (37.93%), Postives = 72/116 (62.07%), Query Frame = 1
Query:    4 YKCRFVAKGFRQIKGIHYQESSSPTHTKSSLRMALAVMALLDWERRQLDVEMTFLEADVTVELYVDLPDGYR--DSPNQVERLQQAMHGLMHAGLLWAKTFGGELITKGFERSQAD 345
            +K R VA+G+ Q +GI Y E  SP    +S+R  LA+  +LDWE  Q+DV   FL+ D+T E+Y+  P+GYR  ++P+ V +L+++++GL  +   W  T    L + G+++  AD
Sbjct:  896 FKARLVAQGYSQTEGIDYNEVFSPVVRNTSIRSLLALANILDWEIHQMDVRTAFLQGDLTDEIYMKQPEGYRSKENPDHVCKLKKSLYGLKQSARCWNSTLDSFLKSSGYKQVGAD 1011          
BLAST of mRNA_F-distichus_contig103152.281.1 vs. uniprot
Match: A0A151TV63_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TV63_CAJCA)

HSP 1 Score: 86.3 bits (212), Expect = 7.860e-18
Identity = 44/116 (37.93%), Postives = 70/116 (60.34%), Query Frame = 1
Query:    4 YKCRFVAKGFRQIKGIHYQESSSPTHTKSSLRMALAVMALLDWERRQLDVEMTFLEADVTVELYVDLPDGY--RDSPNQVERLQQAMHGLMHAGLLWAKTFGGELITKGFERSQAD 345
            YK R V KGFRQIKG+ + E  SP    SS+R  L+++A LD E  Q+DV+ TFL  ++  E+Y+  PDG+      + V RL+++++GL      W K F   +  +G++++ +D
Sbjct:  108 YKARLVVKGFRQIKGVDFNEIFSPVVKMSSIRTVLSLIATLDLEVEQMDVKTTFLHGNLEEEIYMKQPDGFLVEGKEDYVCRLRKSLYGLKQVPRQWYKKFESFMCEQGYKKTTSD 223          
BLAST of mRNA_F-distichus_contig103152.281.1 vs. uniprot
Match: A0A2N9FLV5_FAGSY (Uncharacterized protein n=3 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FLV5_FAGSY)

HSP 1 Score: 87.4 bits (215), Expect = 1.020e-17
Identity = 45/116 (38.79%), Postives = 65/116 (56.03%), Query Frame = 1
Query:    4 YKCRFVAKGFRQIKGIHYQESSSPTHTKSSLRMALAVMALLDWERRQLDVEMTFLEADVTVELYVDLPDGYRDS--PNQVERLQQAMHGLMHAGLLWAKTFGGELITKGFERSQAD 345
            +K R VA+G+ Q  GI Y E+ SP    +++R  L V  +  W  RQ+DV   FL   +T ++Y+  P G++D   PN V RL++A++GL  A   W  T    LI  GF  S+AD
Sbjct:  959 FKARLVARGYHQRPGIDYTETFSPVVKPATIRSVLTVAVMQGWTLRQMDVNNAFLHGQITEDVYMSQPPGFKDQSKPNHVCRLRKAIYGLKQAPRAWYSTLKDALIHLGFHNSKAD 1074          
BLAST of mRNA_F-distichus_contig103152.281.1 vs. uniprot
Match: G8DCY4_PHAVU (Putative gag/pol polyprotein n=1 Tax=Phaseolus vulgaris TaxID=3885 RepID=G8DCY4_PHAVU)

HSP 1 Score: 86.3 bits (212), Expect = 2.610e-17
Identity = 45/116 (38.79%), Postives = 69/116 (59.48%), Query Frame = 1
Query:    4 YKCRFVAKGFRQIKGIHYQESSSPTHTKSSLRMALAVMALLDWERRQLDVEMTFLEADVTVELYVDLPDGY--RDSPNQVERLQQAMHGLMHAGLLWAKTFGGELITKGFERSQAD 345
            YK R V KGFRQ KGI + E  SP    SS+R+ L++ A LD E  Q+DV+  FL  D+  E+Y+  PDG+      + V RL+++++GL  A   W K F   +  +G++++ +D
Sbjct:  818 YKARLVVKGFRQRKGIDFNEIFSPVVKMSSIRIVLSLAATLDLEVEQMDVKTAFLHGDLEEEIYMKQPDGFLVEGKEDHVCRLRKSLYGLKQAPRQWYKKFESVMCEQGYKKTTSD 933          
BLAST of mRNA_F-distichus_contig103152.281.1 vs. uniprot
Match: A0A151UCJ4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151UCJ4_CAJCA)

HSP 1 Score: 85.5 bits (210), Expect = 2.790e-17
Identity = 44/116 (37.93%), Postives = 69/116 (59.48%), Query Frame = 1
Query:    4 YKCRFVAKGFRQIKGIHYQESSSPTHTKSSLRMALAVMALLDWERRQLDVEMTFLEADVTVELYVDLPDGY--RDSPNQVERLQQAMHGLMHAGLLWAKTFGGELITKGFERSQAD 345
            YK R V KGFRQ KG+ + E  SP    +S+R  L++ A LD E  Q+DV+ TFL  D+  E+Y+  PDG+      + V RL+++++GL  A   W K F   +  +G++++ +D
Sbjct:   50 YKARLVVKGFRQRKGVDFNEIFSPVVRMTSIRTVLSLAATLDLEVEQMDVKTTFLHGDLEEEIYMKQPDGFLIEGKEDYVCRLRKSLYGLKQAPRQWYKKFESVMCEQGYKKTTSD 165          
BLAST of mRNA_F-distichus_contig103152.281.1 vs. uniprot
Match: A0A6A2XDJ5_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2XDJ5_HIBSY)

HSP 1 Score: 85.9 bits (211), Expect = 3.540e-17
Identity = 45/116 (38.79%), Postives = 71/116 (61.21%), Query Frame = 1
Query:    4 YKCRFVAKGFRQIKGIHYQESSSPTHTKSSLRMALAVMALLDWERRQLDVEMTFLEADVTVELYVDLPDGYR--DSPNQVERLQQAMHGLMHAGLLWAKTFGGELITKGFERSQAD 345
            YK R VAKG+ Q +G+ Y E  SP    SS+R+ LA++ALLD E  Q+DV+  FL  D+  E+Y+  PDG++  +    V +L+++++GL  +   W K F   +I + + RS+ D
Sbjct:  845 YKARLVAKGYAQTEGVDYNEVFSPVVKHSSIRILLALVALLDLELVQMDVKTAFLHGDMDEEIYMTQPDGFKVAEKEEMVCKLEKSLYGLKQSPRQWYKRFDKFMIGQKYTRSKYD 960          
BLAST of mRNA_F-distichus_contig103152.281.1 vs. uniprot
Match: A0A2Z6NTG1_TRISU (Integrase catalytic domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NTG1_TRISU)

HSP 1 Score: 85.5 bits (210), Expect = 4.840e-17
Identity = 45/115 (39.13%), Postives = 69/115 (60.00%), Query Frame = 1
Query:    7 KCRFVAKGFRQIKGIHYQESSSPTHTKSSLRMALAVMALLDWERRQLDVEMTFLEADVTVELYVDLPDGY--RDSPNQVERLQQAMHGLMHAGLLWAKTFGGELITKGFERSQAD 345
            K R V KGFRQ KG+ + E  SP    SS+R  LA+ A LD E  Q+DV+ TFL  D+  E+Y+  PDG+  +   + V RL+++++GL  A   W K F   +  +G++++ +D
Sbjct:  635 KARLVVKGFRQRKGVDFNEIFSPVVKMSSIRTVLALAATLDLEVEQMDVKTTFLHGDLEEEIYMKQPDGFLVKGKEDYVCRLRKSLYGLKQAPRQWYKKFESVMSEQGYKKTTSD 749          
BLAST of mRNA_F-distichus_contig103152.281.1 vs. uniprot
Match: A0A438H299_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438H299_VITVI)

HSP 1 Score: 84.3 bits (207), Expect = 1.220e-16
Identity = 43/116 (37.07%), Postives = 71/116 (61.21%), Query Frame = 1
Query:    4 YKCRFVAKGFRQIKGIHYQESSSPTHTKSSLRMALAVMALLDWERRQLDVEMTFLEADVTVELYVDLPDGYRDS--PNQVERLQQAMHGLMHAGLLWAKTFGGELITKGFERSQAD 345
            YK R VAKG+ Q +GI + E+ SP  TK S R+ + ++A  D E  Q+DV+ TFL  D++ E+Y+  P+G++++   N V RL+++++GL  A   W   F   + + GF  ++ D
Sbjct:  742 YKARLVAKGYTQREGIDFTETFSPVSTKDSFRLVMVLVAHFDLELHQMDVKTTFLNGDLSEEVYMSQPEGFKENGKENMVCRLKRSIYGLKQASRQWYLKFDKIVTSFGFIENKFD 857          
BLAST of mRNA_F-distichus_contig103152.281.1 vs. uniprot
Match: A0A5H2XTU8_PRUDU (RmlC-like cupins superfamily protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2XTU8_PRUDU)

HSP 1 Score: 84.0 bits (206), Expect = 1.590e-16
Identity = 45/115 (39.13%), Postives = 65/115 (56.52%), Query Frame = 1
Query:    4 YKCRFVAKGFRQIKGIHYQESSSPTHTKSSLRMALAVMALLDWERRQLDVEMTFLEADVTVELYVDLPDGY-RDSPNQVERLQQAMHGLMHAGLLWAKTFGGELITKGFERSQAD 345
            YK R VAKG++Q++GI Y ++ SPT    ++R  LA+ A  DW   QLDV   FL  D+  E+Y+  P G  R   N V RL ++++GL  A   W   F   + T  + +S+AD
Sbjct:  191 YKARLVAKGYKQLEGIDYHDTFSPTAKMITVRCLLALAAAQDWSLHQLDVNNAFLHGDLHEEIYMSPPPGLQRQGENLVCRLNKSLYGLKQASRQWFAKFSTAIQTAEYVQSKAD 305          
BLAST of mRNA_F-distichus_contig103152.281.1 vs. uniprot
Match: A0A2N9J5N8_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J5N8_FAGSY)

HSP 1 Score: 84.0 bits (206), Expect = 1.650e-16
Identity = 41/116 (35.34%), Postives = 68/116 (58.62%), Query Frame = 1
Query:    4 YKCRFVAKGFRQIKGIHYQESSSPTHTKSSLRMALAVMALLDWERRQLDVEMTFLEADVTVELYVDLPDGYRDS--PNQVERLQQAMHGLMHAGLLWAKTFGGELITKGFERSQAD 345
            +K R VAKGF Q+ G+ Y E+ SP    + +R+ L++     W  RQ+D++  FL  +++ E+++  P GY+ S  PN V +LQ+A++GL  A   W      +L+  GF  S++D
Sbjct:  570 HKARLVAKGFHQLFGVDYDETYSPVIKPTMVRIVLSIALSSGWSFRQIDIQNAFLHGNLSEEVFMSQPPGYKHSLYPNHVCKLQRAIYGLKQAPRAWFSHLSNKLLDLGFHGSRSD 685          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig103152.281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9IUY0_PARCT8.500e-1937.93Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A151TV63_CAJCA7.860e-1837.93Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9FLV5_FAGSY1.020e-1738.79Uncharacterized protein n=3 Tax=Fagus sylvatica Ta... [more]
G8DCY4_PHAVU2.610e-1738.79Putative gag/pol polyprotein n=1 Tax=Phaseolus vul... [more]
A0A151UCJ4_CAJCA2.790e-1737.93Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A2XDJ5_HIBSY3.540e-1738.79Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]
A0A2Z6NTG1_TRISU4.840e-1739.13Integrase catalytic domain-containing protein n=1 ... [more]
A0A438H299_VITVI1.220e-1637.07Retrovirus-related Pol polyprotein from transposon... [more]
A0A5H2XTU8_PRUDU1.590e-1639.13RmlC-like cupins superfamily protein n=1 Tax=Prunu... [more]
A0A2N9J5N8_FAGSY1.650e-1635.34Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig103152contigF-distichus_contig103152:64..408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score88.2
Seed ortholog evalue2.7e-15
Seed eggNOG ortholog28532.XP_010532348.1
Preferred nameUSP
KEGG rclassRC00002
KEGG koko:K12447
KEGG ReactionR00289,R00502,R01381,R03077,R08845
KEGG Pathwayko00040,ko00052,ko00053,ko00520,ko01100,ko01130,map00040,map00052,map00053,map00520,map01100,map01130
KEGG ModuleM00014
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003983,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006011,GO:0006082,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009225,GO:0009226,GO:0009555,GO:0009987,GO:0010035,GO:0010038,GO:0010491,GO:0016740,GO:0016772,GO:0016779,GO:0017103,GO:0018130,GO:0019438,GO:0019752,GO:0032501,GO:0032502,GO:0033356,GO:0034641,GO:0034654,GO:0042221,GO:0042995,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046398,GO:0046483,GO:0046686,GO:0047338,GO:0047350,GO:0048229,GO:0048856,GO:0050896,GO:0051748,GO:0052573,GO:0055086,GO:0070569,GO:0071704,GO:0090406,GO:0120025,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.udp-sugar
EggNOG OGs37MVU@33090,3GGIU@35493,3HSQP@3699,COG2801@1,COG4284@1,KOG0017@2759,KOG2388@2759
EC2.7.7.64
COG Functional cat.M
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size345
Cds size345
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928949.405967-CDS-F-distichus_contig103152:63..4081622928949.405967-CDS-F-distichus_contig103152:63..408Fucus distichus monoicousCDSF-distichus_contig103152 64..408 -
1690885078.9107087-CDS-F-distichus_contig103152:63..4081690885078.9107087-CDS-F-distichus_contig103152:63..408Fucus distichus monoicousCDSF-distichus_contig103152 64..408 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig103152.281.1prot_F-distichus_contig103152.281.1Fucus distichus monoicouspolypeptideF-distichus_contig103152 64..408 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig103152.281.1

>prot_F-distichus_contig103152.281.1 ID=prot_F-distichus_contig103152.281.1|Name=mRNA_F-distichus_contig103152.281.1|organism=Fucus distichus monoicous|type=polypeptide|length=115bp
MYKCRFVAKGFRQIKGIHYQESSSPTHTKSSLRMALAVMALLDWERRQLD
VEMTFLEADVTVELYVDLPDGYRDSPNQVERLQQAMHGLMHAGLLWAKTF
GGELITKGFERSQAD
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mRNA from alignment at F-distichus_contig103152:64..408-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig103152.281.1 ID=mRNA_F-distichus_contig103152.281.1|Name=mRNA_F-distichus_contig103152.281.1|organism=Fucus distichus monoicous|type=mRNA|length=345bp|location=Sequence derived from alignment at F-distichus_contig103152:64..408- (Fucus distichus monoicous)
ATGTACAAGTGCCGCTTCGTGGCCAAGGGTTTCCGCCAGATCAAGGGGAT TCACTATCAAGAGTCATCGTCGCCGACTCATACAAAGTCGAGCCTCCGGA TGGCGCTGGCGGTGATGGCCCTGTTGGACTGGGAGAGGCGGCAGCTTGAC GTAGAAATGACGTTTCTCGAGGCAGATGTTACGGTGGAGCTCTACGTTGA TCTCCCCGACGGGTATCGGGACTCACCAAACCAGGTTGAACGACTGCAGC AGGCCATGCACGGCCTGATGCACGCCGGACTACTATGGGCGAAGACGTTC GGTGGAGAGCTGATAACGAAGGGATTCGAGAGGTCCCAAGCCGAT
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Coding sequence (CDS) from alignment at F-distichus_contig103152:64..408-

>mRNA_F-distichus_contig103152.281.1 ID=mRNA_F-distichus_contig103152.281.1|Name=mRNA_F-distichus_contig103152.281.1|organism=Fucus distichus monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at F-distichus_contig103152:64..408- (Fucus distichus monoicous)
ATGTACAAGTGCCGCTTCGTGGCCAAGGGTTTCCGCCAGATCAAGGGGAT
TCACTATCAAGAGTCATCGTCGCCGACTCATACAAAGTCGAGCCTCCGGA
TGGCGCTGGCGGTGATGGCCCTGTTGGACTGGGAGAGGCGGCAGCTTGAC
GTAGAAATGACGTTTCTCGAGGCAGATGTTACGGTGGAGCTCTACGTTGA
TCTCCCCGACGGGTATCGGGACTCACCAAACCAGGTTGAACGACTGCAGC
AGGCCATGCACGGCCTGATGCACGCCGGACTACTATGGGCGAAGACGTTC
GGTGGAGAGCTGATAACGAAGGGATTCGAGAGGTCCCAAGCCGATATGTA
CAAGTGCCGCTTCGTGGCCAAGGGTTTCCGCCAGATCAAGGGGATTCACT
ATCAAGAGTCATCGTCGCCGACTCATACAAAGTCGAGCCTCCGGATGGCG
CTGGCGGTGATGGCCCTGTTGGACTGGGAGAGGCGGCAGCTTGACGTAGA
AATGACGTTTCTCGAGGCAGATGTTACGGTGGAGCTCTACGTTGATCTCC
CCGACGGGTATCGGGACTCACCAAACCAGGTTGAACGACTGCAGCAGGCC
ATGCACGGCCTGATGCACGCCGGACTACTATGGGCGAAGACGTTCGGTGG
AGAGCTGATAACGAAGGGATTCGAGAGGTCCCAAGCCGAT
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