mRNA_F-distichus_contig103044.269.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig103044.269.1
Unique NamemRNA_F-distichus_contig103044.269.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig103044.269.1 vs. uniprot
Match: D8LNZ7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNZ7_ECTSI)

HSP 1 Score: 250 bits (639), Expect = 1.720e-72
Identity = 192/457 (42.01%), Postives = 263/457 (57.55%), Query Frame = 1 
Query:    1 MPGATDM-AGVGLVASGVLRPLDKENF-NTPSAAGRTPDKRPK-----------PSASPGFRIFQDETFITCASTNEKLKPSPPKLLKALKHAETEAAKYKEELRETRASLQARHERVQELKTAAASINQQHTALLKKHEEAIKELGLVRA-----------------------MAENSELLREERASLEAKLAKREAALSFVKKEVXXXXXXXXXXXXXXXXXXXXXXIASQESNGDPNARREGIAAEPERRWYLEKAALDAQIKELEEQLTASQRRCSVVVAERAVLAEEATRRGKEHSAKVAALQNERNSLQRRTSADLGDWQRRHREALGAKKAAEGQLERLVEASKSIARFAEKQAVLEASLQEACELLSQGVPTENPSVGSGEGPGSAERVVEGVIEHILGRVFEATRT------EQTADDGWRDRETEHSLMEAELDLRGKAVEKLAADV 1245
            MPGA D  +G GL + GVL+ LDKEN  NTP+   RTPD+R K            +A  GF++FQ +   +  ++    + S  +L   L  AE+E A+ KEE R+ R +L  R+E V++LK + A+  Q++TALL+ HEEA KEL L+R                        +  N+ELLREER SL+ +LAKR+AA+S +K ++                       A+  S     A+           W L+K AL+A+I ELE Q  +S RRC  +VAER +LAEE+ RR KEH++ VA+L++E   L RRT+ADLGDW++R+R+ +GAK+A EGQLERLV AS+S+ R  EK AVLEASLQEA  LLSQ V  E    G       A RVVEGV+EH+LGRVF+AT T      E   ++G ++RE +  L +   D  G+ +EKL AD+
Sbjct:    1 MPGARDAGSGGGLFSPGVLQQLDKENVVNTPA---RTPDRRRKLGSAIRGTSSAAAAGVGFKVFQQQGEASTRTSVAGQEAS--QLATDLSRAESELARLKEEARQARRALDERNEMVEQLKASKANTKQRYTALLQSHEEANKELELLRTQKLDSSGDSGSGIVEQLRATVENLETNNELLREERGSLQTRLAKRDAAVSAMKADLAAATQRDDALRQKADRLREELDAAAAASKAGAQAQ-----------WDLDKEALEARIGELETQAASSGRRCVELVAERDLLAEESARREKEHASTVASLRSEMQGLHRRTTADLGDWRQRYRQEVGAKRALEGQLERLVAASESVTRVIEKHAVLEASLQEAYGLLSQAVLAEER--GXXXXXXXAARVVEGVLEHLLGRVFQATATSGDEEEEGEDEEGRKEREADRRLSKEASDNLGEELEKLTADM 439
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig103044.269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNZ7_ECTSI1.720e-7242.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig103044contigF-distichus_contig103044:386..1630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_000560.1
Exons1
Model size1245
Cds size1245
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928948.2950518-CDS-F-distichus_contig103044:385..16301622928948.2950518-CDS-F-distichus_contig103044:385..1630Fucus distichus monoicousCDSF-distichus_contig103044 386..1630 -
1690885078.4527898-CDS-F-distichus_contig103044:385..16301690885078.4527898-CDS-F-distichus_contig103044:385..1630Fucus distichus monoicousCDSF-distichus_contig103044 386..1630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig103044.269.1prot_F-distichus_contig103044.269.1Fucus distichus monoicouspolypeptideF-distichus_contig103044 386..1630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig103044.269.1

>prot_F-distichus_contig103044.269.1 ID=prot_F-distichus_contig103044.269.1|Name=mRNA_F-distichus_contig103044.269.1|organism=Fucus distichus monoicous|type=polypeptide|length=415bp
MPGATDMAGVGLVASGVLRPLDKENFNTPSAAGRTPDKRPKPSASPGFRI
FQDETFITCASTNEKLKPSPPKLLKALKHAETEAAKYKEELRETRASLQA
RHERVQELKTAAASINQQHTALLKKHEEAIKELGLVRAMAENSELLREER
ASLEAKLAKREAALSFVKKEVAAVTERESTIREELERVRRELEIASQESN
GDPNARREGIAAEPERRWYLEKAALDAQIKELEEQLTASQRRCSVVVAER
AVLAEEATRRGKEHSAKVAALQNERNSLQRRTSADLGDWQRRHREALGAK
KAAEGQLERLVEASKSIARFAEKQAVLEASLQEACELLSQGVPTENPSVG
SGEGPGSAERVVEGVIEHILGRVFEATRTEQTADDGWRDRETEHSLMEAE
LDLRGKAVEKLAADV
back to top

mRNA from alignment at F-distichus_contig103044:386..1630-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig103044.269.1 ID=mRNA_F-distichus_contig103044.269.1|Name=mRNA_F-distichus_contig103044.269.1|organism=Fucus distichus monoicous|type=mRNA|length=1245bp|location=Sequence derived from alignment at F-distichus_contig103044:386..1630- (Fucus distichus monoicous)
ATGCCAGGAGCAACAGATATGGCTGGAGTTGGACTTGTCGCTTCTGGGGT
TCTACGGCCACTGGACAAGGAGAACTTCAACACACCTAGTGCAGCTGGGC
GAACACCAGATAAGAGACCCAAACCCTCTGCATCTCCAGGCTTTCGAATT
TTTCAGGACGAAACCTTTATAACCTGCGCTTCGACCAACGAGAAACTCAA
GCCGTCGCCACCGAAGCTACTCAAAGCGCTAAAACATGCGGAAACTGAGG
CAGCCAAGTACAAAGAGGAACTCCGAGAGACTCGGGCTTCTCTTCAGGCA
CGTCATGAACGGGTGCAAGAACTAAAGACCGCCGCAGCATCCATCAACCA
GCAGCATACGGCCTTGCTCAAGAAACATGAGGAGGCTATCAAGGAGCTGG
GGCTGGTACGTGCTATGGCTGAGAACAGCGAGCTCCTTCGTGAGGAGAGG
GCTTCGTTAGAGGCGAAGCTGGCGAAGCGTGAAGCAGCGCTTTCCTTCGT
GAAGAAGGAAGTTGCCGCTGTCACGGAGCGAGAGTCTACCATCCGCGAGG
AGCTCGAGCGAGTGCGGAGGGAGCTCGAGATCGCTTCACAAGAGTCTAAC
GGCGACCCAAATGCGCGAAGAGAAGGGATCGCAGCGGAGCCGGAGAGACG
GTGGTATCTAGAGAAAGCGGCGCTTGATGCTCAAATCAAAGAGCTAGAGG
AGCAGTTGACAGCATCTCAGCGACGATGCTCAGTGGTTGTGGCTGAACGT
GCTGTTCTTGCGGAAGAGGCCACACGGCGAGGGAAGGAGCACAGCGCCAA
GGTTGCCGCCCTGCAGAACGAGCGTAATTCTCTGCAACGGAGGACGTCTG
CCGACCTGGGAGACTGGCAGAGGCGGCATCGTGAGGCGCTTGGCGCCAAG
AAGGCGGCAGAGGGGCAGCTCGAGCGACTGGTCGAAGCCAGTAAATCTAT
AGCCCGCTTCGCGGAGAAGCAGGCTGTTCTTGAGGCCTCGCTGCAAGAGG
CTTGCGAGCTGTTGTCGCAGGGTGTACCCACAGAGAACCCATCGGTGGGT
TCGGGCGAAGGACCAGGCTCGGCGGAGAGGGTGGTGGAAGGAGTTATTGA
GCATATCTTGGGACGAGTGTTCGAGGCCACACGAACTGAGCAGACGGCAG
ACGATGGATGGAGGGACCGCGAAACGGAGCACTCGCTGATGGAGGCGGAG
TTAGATTTGCGCGGGAAAGCGGTCGAGAAGCTCGCGGCTGATGTG
back to top

Coding sequence (CDS) from alignment at F-distichus_contig103044:386..1630-

>mRNA_F-distichus_contig103044.269.1 ID=mRNA_F-distichus_contig103044.269.1|Name=mRNA_F-distichus_contig103044.269.1|organism=Fucus distichus monoicous|type=CDS|length=2490bp|location=Sequence derived from alignment at F-distichus_contig103044:386..1630- (Fucus distichus monoicous)
ATGCCAGGAGCAACAGATATGGCTGGAGTTGGACTTGTCGCTTCTGGGGT
TCTACGGCCACTGGACAAGGAGAACTTCAACACACCTAGTGCAGCTGGGC
GAACACCAGATAAGAGACCCAAACCCTCTGCATCTCCAGGCTTTCGAATT
TTTCAGGACGAAACCTTTATAACCTGCGCTTCGACCAACGAGAAACTCAA
GCCGTCGCCACCGAAGCTACTCAAAGCGCTAAAACATGCGGAAACTGAGG
CAGCCAAGTACAAAGAGGAACTCCGAGAGACTCGGGCTTCTCTTCAGGCA
CGTCATGAACGGGTGCAAGAACTAAAGACCGCCGCAGCATCCATCAACCA
GCAGCATACGGCCTTGCTCAAGAAACATGAGGAGGCTATCAAGGAGCTGG
GGCTGGTACGTGCTATGGCTGAGAACAGCGAGCTCCTTCGTGAGGAGAGG
GCTTCGTTAGAGGCGAAGCTGGCGAAGCGTGAAGCAGCGCTTTCCTTCGT
GAAGAAGGAAGTTGCCGCTGTCACGGAGCGAGAGTCTACCATCCGCGAGG
AGCTCGAGCGAGTGCGGAGGGAGCTCGAGATCGCTTCACAAGAGTCTAAC
GGCGACCCAAATGCGCGAAGAGAAGGGATCGCAGCGGAGCCGGAGAGACG
GTGGTATCTAGAGAAAGCGGCGCTTGATGCTCAAATCAAAGAGCTAGAGG
AGCAGTTGACAGCATCTCAGCGACGATGCTCAGTGGTTGTGGCTGAACGT
GCTGTTCTTGCGGAAGAGGCCACACGGCGAGGGAAGGAGCACAGCGCCAA
GGTTGCCGCCCTGCAGAACGAGCGTAATTCTCTGCAACGGAGGACGTCTG
CCGACCTGGGAGACTGGCAGAGGCGGCATCGTGAGGCGCTTGGCGCCAAG
AAGGCGGCAGAGGGGCAGCTCGAGCGACTGGTCGAAGCCAGTAAATCTAT
AGCCCGCTTCGCGGAGAAGCAGGCTGTTCTTGAGGCCTCGCTGCAAGAGG
CTTGCGAGCTGTTGTCGCAGGGTGTACCCACAGAGAACCCATCGGTGGGT
TCGGGCGAAGGACCAGGCTCGGCGGAGAGGGTGGTGGAAGGAGTTATTGA
GCATATCTTGGGACGAGTGTTCGAGGCCACACGAACTGAGCAGACGGCAG
ACGATGGATGGAGGGACCGCGAAACGGAGCACTCGCTGATGGAGGCGGAG
TTAGATTTGCGCGGGAAAGCGGTCGAGAAGCTCGCGGCTGATGTGATGCC
AGGAGCAACAGATATGGCTGGAGTTGGACTTGTCGCTTCTGGGGTTCTAC
GGCCACTGGACAAGGAGAACTTCAACACACCTAGTGCAGCTGGGCGAACA
CCAGATAAGAGACCCAAACCCTCTGCATCTCCAGGCTTTCGAATTTTTCA
GGACGAAACCTTTATAACCTGCGCTTCGACCAACGAGAAACTCAAGCCGT
CGCCACCGAAGCTACTCAAAGCGCTAAAACATGCGGAAACTGAGGCAGCC
AAGTACAAAGAGGAACTCCGAGAGACTCGGGCTTCTCTTCAGGCACGTCA
TGAACGGGTGCAAGAACTAAAGACCGCCGCAGCATCCATCAACCAGCAGC
ATACGGCCTTGCTCAAGAAACATGAGGAGGCTATCAAGGAGCTGGGGCTG
GTACGTGCTATGGCTGAGAACAGCGAGCTCCTTCGTGAGGAGAGGGCTTC
GTTAGAGGCGAAGCTGGCGAAGCGTGAAGCAGCGCTTTCCTTCGTGAAGA
AGGAAGTTGCCGCTGTCACGGAGCGAGAGTCTACCATCCGCGAGGAGCTC
GAGCGAGTGCGGAGGGAGCTCGAGATCGCTTCACAAGAGTCTAACGGCGA
CCCAAATGCGCGAAGAGAAGGGATCGCAGCGGAGCCGGAGAGACGGTGGT
ATCTAGAGAAAGCGGCGCTTGATGCTCAAATCAAAGAGCTAGAGGAGCAG
TTGACAGCATCTCAGCGACGATGCTCAGTGGTTGTGGCTGAACGTGCTGT
TCTTGCGGAAGAGGCCACACGGCGAGGGAAGGAGCACAGCGCCAAGGTTG
CCGCCCTGCAGAACGAGCGTAATTCTCTGCAACGGAGGACGTCTGCCGAC
CTGGGAGACTGGCAGAGGCGGCATCGTGAGGCGCTTGGCGCCAAGAAGGC
GGCAGAGGGGCAGCTCGAGCGACTGGTCGAAGCCAGTAAATCTATAGCCC
GCTTCGCGGAGAAGCAGGCTGTTCTTGAGGCCTCGCTGCAAGAGGCTTGC
GAGCTGTTGTCGCAGGGTGTACCCACAGAGAACCCATCGGTGGGTTCGGG
CGAAGGACCAGGCTCGGCGGAGAGGGTGGTGGAAGGAGTTATTGAGCATA
TCTTGGGACGAGTGTTCGAGGCCACACGAACTGAGCAGACGGCAGACGAT
GGATGGAGGGACCGCGAAACGGAGCACTCGCTGATGGAGGCGGAGTTAGA
TTTGCGCGGGAAAGCGGTCGAGAAGCTCGCGGCTGATGTG
back to top