mRNA_F-distichus_contig10290.256.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10290.256.1
Unique NamemRNA_F-distichus_contig10290.256.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig10290.256.1 vs. uniprot
Match: D7FT95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT95_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.570e-5
Identity = 47/161 (29.19%), Postives = 70/161 (43.48%), Query Frame = 1 
Query:    4 LKALLMVLNDAYNGQLQHQWYVSTKQIPLVSVELCVTCRRLETSCIVVTTDTPLHLWRRRKVGETSED---RGHSRLPTLRISELIWKRSVAELPKGSGQF--EVSPTNMVARSCNDRDRLDAAWSSASFRHLHRLSLMPVYNEAINDVVWPAPLLQLTLG 471
            L AL++ LN A  G+    WY ST Q+ L S+ELC +CR +    + V   TP  LWR       +     R  +R+P +R   + WK     L   +G    EV+  ++     +D  R    W       L  L L P +N ++  +  PA +  L  G
Sbjct:   13 LDALIIALNQASGGE----WYTSTMQLQLASLELCASCRSMHLLKLNVQHGTPTRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGLALRNMTGDAWSEVTTFSLGPGFDDDLPR-GIQWPEK----LTLLGLGPGFNRSVEHLSLPASVRFLVFG 164
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10290.256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT95_ECTSI1.570e-529.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10290contigF-distichus_contig10290:1895..4705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size2007
Cds size1989
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10290.256.1prot_F-distichus_contig10290.256.1Fucus distichus monoicouspolypeptideF-distichus_contig10290 1895..4687 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928946.1740632-CDS-F-distichus_contig10290:1894..20691622928946.1740632-CDS-F-distichus_contig10290:1894..2069Fucus distichus monoicousCDSF-distichus_contig10290 1895..2069 -
1690885077.3821256-CDS-F-distichus_contig10290:1894..20691690885077.3821256-CDS-F-distichus_contig10290:1894..2069Fucus distichus monoicousCDSF-distichus_contig10290 1895..2069 -
1622928946.1958697-CDS-F-distichus_contig10290:2246..26211622928946.1958697-CDS-F-distichus_contig10290:2246..2621Fucus distichus monoicousCDSF-distichus_contig10290 2247..2621 -
1690885077.3948615-CDS-F-distichus_contig10290:2246..26211690885077.3948615-CDS-F-distichus_contig10290:2246..2621Fucus distichus monoicousCDSF-distichus_contig10290 2247..2621 -
1622928946.2062871-CDS-F-distichus_contig10290:2810..32121622928946.2062871-CDS-F-distichus_contig10290:2810..3212Fucus distichus monoicousCDSF-distichus_contig10290 2811..3212 -
1690885077.4053953-CDS-F-distichus_contig10290:2810..32121690885077.4053953-CDS-F-distichus_contig10290:2810..3212Fucus distichus monoicousCDSF-distichus_contig10290 2811..3212 -
1622928946.2210965-CDS-F-distichus_contig10290:3476..37781622928946.2210965-CDS-F-distichus_contig10290:3476..3778Fucus distichus monoicousCDSF-distichus_contig10290 3477..3778 -
1690885077.414418-CDS-F-distichus_contig10290:3476..37781690885077.414418-CDS-F-distichus_contig10290:3476..3778Fucus distichus monoicousCDSF-distichus_contig10290 3477..3778 -
1622928946.2308547-CDS-F-distichus_contig10290:3952..46871622928946.2308547-CDS-F-distichus_contig10290:3952..4687Fucus distichus monoicousCDSF-distichus_contig10290 3953..4687 -
1690885077.4225774-CDS-F-distichus_contig10290:3952..46871690885077.4225774-CDS-F-distichus_contig10290:3952..4687Fucus distichus monoicousCDSF-distichus_contig10290 3953..4687 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928946.2426639-UTR-F-distichus_contig10290:4687..47051622928946.2426639-UTR-F-distichus_contig10290:4687..4705Fucus distichus monoicousUTRF-distichus_contig10290 4688..4705 -
1690885077.4326763-UTR-F-distichus_contig10290:4687..47051690885077.4326763-UTR-F-distichus_contig10290:4687..4705Fucus distichus monoicousUTRF-distichus_contig10290 4688..4705 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10290.256.1

>prot_F-distichus_contig10290.256.1 ID=prot_F-distichus_contig10290.256.1|Name=mRNA_F-distichus_contig10290.256.1|organism=Fucus distichus monoicous|type=polypeptide|length=663bp
MVLNDAYNGQLQHQWYVSTKQIPLVSVELCVTCRRLETSCIVVTTDTPLH
LWRRRKVGETSEDRGHSRLPTLRISELIWKRSVAELPKGSGQFEVSPTNM
VARSCNDRDRLDAAWSSASFRHLHRLSLMPVYNEAINDVVWPAPLLQLTL
GGCFNFSVESVVWPVSLQYLKFGDAFNQPIAQVVWPPALRQVVLGRDFNM
PIESVVWPNSLQHLAFGYKFNQPIASVVWPASLQTLTLGEHFRQSSVDNV
LWSSSLQQIIFGKDFNQPIIEVVWPPLLQWLSFGHNFNQPIDGVVWSAAL
QQLIFGHDFNQSIVDVVWPPSLQLLSFGHNFNQPIDHLVWTATIQKLTFG
YDFNQGIDKMAWPSGLQQIVFGKTFNQSITGIVWPDSIKELSFGWDFNQS
IDNVMWPAALQQLMFGYDFNQPIADVVWPPYLQGLRFGHNFNQPIDHLVW
PATFQKLSLGWCFDKPLCSVTWPTSPRLIALTFGYNFNQAIEKMTWPLGL
QHLVFGKMFNQSIAGIVLQDSIKYLTFGWDFNQPIADVKWPSSLRHLEFG
HDFNQPIDNVAWPAELRLVRFGHDFDQSIVDVKWPPTLEQLTFGHDFNQP
PTNITKPPLDEMNWPVSLKSLIFGRGFNQPVDGEKWPVSLVHLYLGPNFG
HPIDCVRWPASLK
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mRNA from alignment at F-distichus_contig10290:1895..4705-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10290.256.1 ID=mRNA_F-distichus_contig10290.256.1|Name=mRNA_F-distichus_contig10290.256.1|organism=Fucus distichus monoicous|type=mRNA|length=2811bp|location=Sequence derived from alignment at F-distichus_contig10290:1895..4705- (Fucus distichus monoicous)
GGACTGAAGGCCTTGCTTATGGTCCTAAATGACGCTTACAACGGGCAGCT
ACAGCATCAGTGGTATGTATCCACCAAGCAAATACCGCTCGTGTCTGTGG
AGCTTTGCGTCACCTGCCGTAGGCTTGAGACATCGTGTATCGTTGTAACG
ACGGACACACCGCTTCACCTCTGGCGACGGCGAAAGGTCGGGGAAACCTC
AGAGGATCGGGGACACTCGCGTTTACCGACGTTGAGAATCAGCGAACTAA
TTTGGAAGAGATCGGTTGCCGAGCTACCAAAGGGAAGTGGGCAGTTCGAG
GTGTCACCCACGAACATGGTGGCGAGATCTTGTAATGATAGGGACCGATT
AGACGCTGCGTGGTCGTCGGCTTCTTTTCGACACCTACACCGACTATCGC
TGATGCCCGTATATAATGAGGCCATCAATGACGTCGTGTGGCCGGCCCCG
CTCCTACAACTTACGCTTGGGGGTTGTTTCAACTTCTCAGTAGAGAGCGT
CGTGTGGCCAGTATCACTACAGTATTTGAAGTTTGGAGATGCTTTCAATC
AGCCCATCGCTCAGGTCGTGTGGCCACCCGCCTTGCGCCAAGTGGTATTA
GGGAGAGACTTCAATATGCCGATTGAATCCGTCGTATGGCCAAACTCCTT
GCAGCACTTGGCATTCGGGTATAAATTTAATCAGCCGATTGCCAGCGTCG
TGTGGCCGGCGTCGTTGCAGACGCTGACATTAGGGGAACACTTCCGCCAG
TCAGTTCGCGATGCCATCTGGCCAGCCGCACTACAACAGATCAAGCTGAA
AAACTACTTGCAAGTAGAGTTCCTCACGGATATGTGGTCTGACCGTTTAC
CACTCTACGGCCGAGCGGAGCCCAAGATCGTGATTGTCGAAATGGGGGCG
TTGTGTTTCAGGTGGAACCTCAATCAGTCGGTCGACAACGTGCTATGGTC
ATCCTCGCTGCAGCAGATAATTTTCGGCAAAGACTTCAACCAGCCCATCA
TTGAAGTGGTGTGGCCACCCTTGCTGCAGTGGCTGAGTTTTGGGCATAAC
TTTAACCAGCCGATCGACGGCGTAGTTTGGTCGGCAGCACTGCAGCAGTT
GATCTTCGGTCATGATTTCAACCAGTCTATAGTTGACGTGGTATGGCCGC
CTTCCCTGCAGTTGCTGAGTTTTGGGCATAACTTCAACCAGCCAATCGAT
CACCTTGTATGGACGGCAACGATTCAAAAGTTGACGTTAGGATGGTGCTT
TGATAAGCCGCTTTGCAGCATCACATGGCCCACCTCGCCACGGCTGATTG
CGTTCGAGGTGCAAGGCTGCACTACAGAGGAGTTCGTTTCTCCAGTGGAT
AGGCGACCTGAAGTGGATGTTGTGTGGGATTTCAACAAGCCACTCGACGG
GGCTATATTGCCTGCCCGATCGACTTGGCTCACATTCGGGAAGTACTTCA
ACCAATCGATGGACTCCGTAGTTTGGCCGGAGTCATTGACGAGATTGACG
TTCGGCTATGACTTCAACCAGGGAATTGATAAAATGGCGTGGCCGTCGGG
TTTGCAGCAGATAGTGTTTGGAAAAACGTTCAATCAATCAATCACCGGAA
TTGTATGGCCAGACTCAATCAAAGAGCTATCTTTTGGGTGGGACTTTAAC
CAGTCTATTGATAACGTGATGTGGCCAGCAGCACTGCAACAGTTGATGTT
CGGTTATGACTTCAATCAGCCTATCGCTGACGTGGTATGGCCACCTTATC
TGCAGGGGCTGAGGTTCGGACATAACTTCAACCAGCCGATTGATCACCTT
GTTTGGCCGGCAACATTTCAAAAACTGTCGTTAGGATGGTGTTTCGATAA
GCCGCTTTGCAGCGTCACATGGCCCACCTCGCCACGGCTGATTGCGTTTG
AAGCGCAAGACTTCACTACGGAGTTTGTTTCTCCGGCGGGTAGGCGACGT
GAAGTGGATGTTGTTTGGGCTTTCAACAAGCCGCTCGACCGGGCTATGTT
GCCACTCCAATCGACTCGGCTTTCATTCGGGCGGCACTTCAACCAATCGA
TGGACCCCTTAGTTTGGCCGGAATTATTGACGAGACTGACGTTTGGCTAT
AACTTCAACCAGGCAATTGAAAAAATGACGTGGCCGTTGGGGTTACAGCA
TCTGGTGTTCGGAAAGATGTTCAATCAATCGATCGCAGGGATTGTATTAC
AAGACTCAATAAAATACTTGACCTTTGGGTGGGACTTTAACCAGCCTATT
GCTGACGTAAAGTGGCCGTCTTCTTTGAGGCATCTGGAGTTTGGCCATGA
CTTTAACCAGCCCATCGATAACGTAGCGTGGCCGGCAGAGTTAAGGCTTG
TGCGATTCGGCCATGACTTTGACCAGTCTATCGTTGACGTAAAGTGGCCG
CCTACTTTGGAACAGCTGACGTTTGGTCACGACTTCAACCAGCCCCCCAC
AAACATTACGTAGCCGTCTACTCTGCAACACCTGATATTTGGTCACAACT
TCAACCACTTCCTCATCAAGGTTATGTGACCGTCTACCCTGGAGCACCTG
GTGTTTGGTGACATGTTCGACCAGCCGATCGAAGCCGCCTTGTGGTCACA
ATTACTGGGGAAGCTTGAGATTTGCGGTGATTTTAGCAAGCCACCACTTG
ACGAAATGAATTGGCCGGTGTCGCTTAAGAGTTTGATTTTTGGGCGGGGA
TTTAATCAACCAGTAGACGGTGAAAAGTGGCCGGTGTCTCTGGTGCACCT
CTATCTAGGACCAAACTTTGGTCACCCAATAGACTGCGTGAGGTGGCCTG
CATCACTCAAA
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Coding sequence (CDS) from alignment at F-distichus_contig10290:1895..4705-

>mRNA_F-distichus_contig10290.256.1 ID=mRNA_F-distichus_contig10290.256.1|Name=mRNA_F-distichus_contig10290.256.1|organism=Fucus distichus monoicous|type=CDS|length=3978bp|location=Sequence derived from alignment at F-distichus_contig10290:1895..4705- (Fucus distichus monoicous)
ATGGTCCTAAATGACGCTTACAACGGGCAGCTACAGCATCAGTGGTATGT
ATCCACCAAGCAAATACCGCTCGTGTCTGTGGAGCTTTGCGTCACCTGCC
GTAGGCTTGAGACATCGTGTATCGTTGTAACGACGGACACACCGCTTCAC
CTCTGGCGACGGCGAAAGGTCGGGGAAACCTCAGAGGATCGGGGACACTC
GCGTTTACCGACGTTGAGAATCAGCGAACTAATTTGGAAGAGATCGGTTG
CCGAGCTACCAAAGGGAAGTGGGCAGTTCGAGGTGTCACCCACGAACATG
GTGGCGAGATCTTGTAATGATAGGGACCGATTAGACGCTGCGTGGTCGTC
GGCTTCTTTTCGACACCTACACCGACTATCGCTGATGCCCGTATATAATG
AGGCCATCAATGACGTCGTGTGGCCGGCCCCGCTCCTACAACTTACGCTT
GGGGGTTGTTTCAACTTCTCAGTAGAGAGCGTCGTGTGGCCAGTATCACT
ACAGTATTTGAAGTTTGGAGATGCTTTCAATCAGCCCATCGCTCAGGTCG
TGTGGCCACCCGCCTTGCGCCAAGTGGTATTAGGGAGAGACTTCAATATG
CCGATTGAATCCGTCGTATGGCCAAACTCCTTGCAGCACTTGGCATTCGG
GTATAAATTTAATCAGCCGATTGCCAGCGTCGTGTGGCCGGCGTCGTTGC
AGACGCTGACATTAGGGGAACACTTCCGCCAGTCAATGGTCCTAAATGAC
GCTTACAACGGGCAGCTACAGCATCAGTGGTATGTATCCACCAAGCAAAT
ACCGCTCGTGTCTGTGGAGCTTTGCGTCACCTGCCGTAGGCTTGAGACAT
CGTGTATCGTTGTAACGACGGACACACCGCTTCACCTCTGGCGACGGCGA
AAGGTCGGGGAAACCTCAGAGGATCGGGGACACTCGCGTTTACCGACGTT
GAGAATCAGCGAACTAATTTGGAAGAGATCGGTTGCCGAGCTACCAAAGG
GAAGTGGGCAGTTCGAGGTGTCACCCACGAACATGGTGGCGAGATCTTGT
AATGATAGGGACCGATTAGACGCTGCGTGGTCGTCGGCTTCTTTTCGACA
CCTACACCGACTATCGCTGATGCCCGTATATAATGAGGCCATCAATGACG
TCGTGTGGCCGGCCCCGCTCCTACAACTTACGCTTGGGGGTTGTTTCAAC
TTCTCAGTAGAGAGCGTCGTGTGGCCAGTATCACTACAGTATTTGAAGTT
TGGAGATGCTTTCAATCAGCCCATCGCTCAGGTCGTGTGGCCACCCGCCT
TGCGCCAAGTGGTATTAGGGAGAGACTTCAATATGCCGATTGAATCCGTC
GTATGGCCAAACTCCTTGCAGCACTTGGCATTCGGGTATAAATTTAATCA
GCCGATTGCCAGCGTCGTGTGGCCGGCGTCGTTGCAGACGCTGACATTAG
GGGAACACTTCCGCCAGTCATCGGTCGACAACGTGCTATGGTCATCCTCG
CTGCAGCAGATAATTTTCGGCAAAGACTTCAACCAGCCCATCATTGAAGT
GGTGTGGCCACCCTTGCTGCAGTGGCTGAGTTTTGGGCATAACTTTAACC
AGCCGATCGACGGCGTAGTTTGGTCGGCAGCACTGCAGCAGTTGATCTTC
GGTCATGATTTCAACCAGTCTATAGTTGACGTGGTATGGCCGCCTTCCCT
GCAGTTGCTGAGTTTTGGGCATAACTTCAACCAGCCAATCGATCACCTTG
TATGGACGGCAACGATTCAAAATCGGTCGACAACGTGCTATGGTCATCCT
CGCTGCAGCAGATAATTTTCGGCAAAGACTTCAACCAGCCCATCATTGAA
GTGGTGTGGCCACCCTTGCTGCAGTGGCTGAGTTTTGGGCATAACTTTAA
CCAGCCGATCGACGGCGTAGTTTGGTCGGCAGCACTGCAGCAGTTGATCT
TCGGTCATGATTTCAACCAGTCTATAGTTGACGTGGTATGGCCGCCTTCC
CTGCAGTTGCTGAGTTTTGGGCATAACTTCAACCAGCCAATCGATCACCT
TGTATGGACGGCAACGATTCAAAAATTGACGTTCGGCTATGACTTCAACC
AGGGAATTGATAAAATGGCGTGGCCGTCGGGTTTGCAGCAGATAGTGTTT
GGAAAAACGTTCAATCAATCAATCACCGGAATTGTATGGCCAGACTCAAT
CAAAGAGCTATCTTTTGGGTGGGACTTTAACCAGTCTATTGATAACGTGA
TGTGGCCAGCAGCACTGCAACAGTTGATGTTCGGTTATGACTTCAATCAG
CCTATCGCTGACGTGGTATGGCCACCTTATCTGCAGGGGCTGAGGTTCGG
ACATAACTTCAACCAGCCGATTGATCACCTTGTTTGGCCGGCAACATTTC
AAAAACTGTCGTTAGGATGGTGTTTCGATAAGCCGCTTTGCAGCGTCACA
TGGCCCACCTCGCCACGGCTGATTGCATTGACGTTCGGCTATGACTTCAA
CCAGGGAATTGATAAAATGGCGTGGCCGTCGGGTTTGCAGCAGATAGTGT
TTGGAAAAACGTTCAATCAATCAATCACCGGAATTGTATGGCCAGACTCA
ATCAAAGAGCTATCTTTTGGGTGGGACTTTAACCAGTCTATTGATAACGT
GATGTGGCCAGCAGCACTGCAACAGTTGATGTTCGGTTATGACTTCAATC
AGCCTATCGCTGACGTGGTATGGCCACCTTATCTGCAGGGGCTGAGGTTC
GGACATAACTTCAACCAGCCGATTGATCACCTTGTTTGGCCGGCAACATT
TCAAAAACTGTCGTTAGGATGGTGTTTCGATAAGCCGCTTTGCAGCGTCA
CATGGCCCACCTCGCCACGGCTGATTGCACTGACGTTTGGCTATAACTTC
AACCAGGCAATTGAAAAAATGACGTGGCCGTTGGGGTTACAGCATCTGGT
GTTCGGAAAGATGTTCAATCAATCGATCGCAGGGATTGTATTACAAGACT
CAATAAAATACTTGACCTTTGGGTGGGACTTTAACCAGCCTATTGCTGAC
GTAAAGTGGCCGTCTTCTTTGAGGCATCTGGAGTTTGGCCATGACTTTAA
CCAGCCCATCGATAACGTAGCGTGGCCGGCAGAGTTAAGGCTTGTGCGAT
TCGGCCATGACTTTGACCAGTCTATCGTTGACGTAAAGTGGCCGCCTACT
TTGGAACAGCTGACGTTTGGTCACGACTTCAACCAGCCCCCCACAAACAT
TACACTGACGTTTGGCTATAACTTCAACCAGGCAATTGAAAAAATGACGT
GGCCGTTGGGGTTACAGCATCTGGTGTTCGGAAAGATGTTCAATCAATCG
ATCGCAGGGATTGTATTACAAGACTCAATAAAATACTTGACCTTTGGGTG
GGACTTTAACCAGCCTATTGCTGACGTAAAGTGGCCGTCTTCTTTGAGGC
ATCTGGAGTTTGGCCATGACTTTAACCAGCCCATCGATAACGTAGCGTGG
CCGGCAGAGTTAAGGCTTGTGCGATTCGGCCATGACTTTGACCAGTCTAT
CGTTGACGTAAAGTGGCCGCCTACTTTGGAACAGCTGACGTTTGGTCACG
ACTTCAACCAGCCCCCCACAAACATTACCAAGCCACCACTTGACGAAATG
AATTGGCCGGTGTCGCTTAAGAGTTTGATTTTTGGGCGGGGATTTAATCA
ACCAGTAGACGGTGAAAAGTGGCCGGTGTCTCTGGTGCACCTCTATCTAG
GACCAAACTTTGGTCACCCAATAGACTGCGTGAGGTGGCCTGCATCACTC
AAACAAGCCACCACTTGACGAAATGAATTGGCCGGTGTCGCTTAAGAGTT
TGATTTTTGGGCGGGGATTTAATCAACCAGTAGACGGTGAAAAGTGGCCG
GTGTCTCTGGTGCACCTCTATCTAGGACCAAACTTTGGTCACCCAATAGA
CTGCGTGAGGTGGCCTGCATCACTCAAA
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