mRNA_F-distichus_contig10288.253.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10288.253.1
Unique NamemRNA_F-distichus_contig10288.253.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig10288.253.1 vs. uniprot
Match: A0A6H5LJ83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJ83_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 1.280e-53
Identity = 104/158 (65.82%), Postives = 121/158 (76.58%), Query Frame = 3 
Query:   93 PGTPAPGREQTLGEAFAAMQHHGRGKRKVKAKVLYNILERVSSEDELKYAHLGLELFKKQEIKLSKKAGSLFLKACCKAGSPQAAVHALEEAEKYGLHEESVVSAHRFNHLLSQLYKAGDEDSFRRAVAEARSRPEMLNRRSHFLVDSFEAESRARGE 566
            PGTP  GR+QT+GEAFAAMQ+H RG RKVKA VL  ILERV+S ++LKYA LGL++FK Q I L KK  +LF+KACCKAGSPQ AV  L EA KYGL  E VVSAHRFN+LLSQLY AGD ++F RAV+EA  R + LN RSH L+  FE E RA+ E
Sbjct:   80 PGTPPAGRDQTIGEAFAAMQYHARGTRKVKASVLNRILERVTSAEDLKYACLGLKIFKTQGIDLEKKTATLFVKACCKAGSPQMAVDVLGEAAKYGLDGEGVVSAHRFNYLLSQLYIAGDSETFTRAVSEAEHRQQSLNARSHTLISKFEGEMRAKEE 237
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BLAST of mRNA_F-distichus_contig10288.253.1 vs. uniprot
Match: D7FS35_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS35_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 2.730e-15
Identity = 46/74 (62.16%), Postives = 53/74 (71.62%), Query Frame = 3 
Query:  345 AVHALEEAEKYGLHEESVVSAHRFNHLLSQLYKAGDEDSFRRAVAEARSRPEMLNRRSHFLVDSFEAESRARGE 566
            AV  L EA KYGL  E VVSAHRFN+LLSQLY AGD ++F RAV+EA  R + LN RSH L+  FE E RA+ E
Sbjct:    2 AVDVLGEAAKYGLDGEGVVSAHRFNYLLSQLYIAGDSETFTRAVSEAEHRQQSLNARSHTLIAKFEGEMRAKEE 75
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10288.253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LJ83_9PHAE1.280e-5365.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS35_ECTSI2.730e-1562.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10288contigF-distichus_contig10288:3470..5867 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_004500.1
Exons4
Model size1415
Cds size573
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10288.253.1prot_F-distichus_contig10288.253.1Fucus distichus monoicouspolypeptideF-distichus_contig10288 4166..5721 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928945.964334-UTR-F-distichus_contig10288:3469..41651622928945.964334-UTR-F-distichus_contig10288:3469..4165Fucus distichus monoicousUTRF-distichus_contig10288 3470..4165 -
1690885077.2772245-UTR-F-distichus_contig10288:3469..41651690885077.2772245-UTR-F-distichus_contig10288:3469..4165Fucus distichus monoicousUTRF-distichus_contig10288 3470..4165 -
1622928946.0184834-UTR-F-distichus_contig10288:5721..58671622928946.0184834-UTR-F-distichus_contig10288:5721..5867Fucus distichus monoicousUTRF-distichus_contig10288 5722..5867 -
1690885077.3262696-UTR-F-distichus_contig10288:5721..58671690885077.3262696-UTR-F-distichus_contig10288:5721..5867Fucus distichus monoicousUTRF-distichus_contig10288 5722..5867 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928945.9751656-CDS-F-distichus_contig10288:4165..44251622928945.9751656-CDS-F-distichus_contig10288:4165..4425Fucus distichus monoicousCDSF-distichus_contig10288 4166..4425 -
1690885077.2880988-CDS-F-distichus_contig10288:4165..44251690885077.2880988-CDS-F-distichus_contig10288:4165..4425Fucus distichus monoicousCDSF-distichus_contig10288 4166..4425 -
1622928945.9851425-CDS-F-distichus_contig10288:4801..49461622928945.9851425-CDS-F-distichus_contig10288:4801..4946Fucus distichus monoicousCDSF-distichus_contig10288 4802..4946 -
1690885077.2968879-CDS-F-distichus_contig10288:4801..49461690885077.2968879-CDS-F-distichus_contig10288:4801..4946Fucus distichus monoicousCDSF-distichus_contig10288 4802..4946 -
1622928945.996875-CDS-F-distichus_contig10288:5218..53561622928945.996875-CDS-F-distichus_contig10288:5218..5356Fucus distichus monoicousCDSF-distichus_contig10288 5219..5356 -
1690885077.3061008-CDS-F-distichus_contig10288:5218..53561690885077.3061008-CDS-F-distichus_contig10288:5218..5356Fucus distichus monoicousCDSF-distichus_contig10288 5219..5356 -
1622928946.0073242-CDS-F-distichus_contig10288:5691..57211622928946.0073242-CDS-F-distichus_contig10288:5691..5721Fucus distichus monoicousCDSF-distichus_contig10288 5692..5721 -
1690885077.3157685-CDS-F-distichus_contig10288:5691..57211690885077.3157685-CDS-F-distichus_contig10288:5691..5721Fucus distichus monoicousCDSF-distichus_contig10288 5692..5721 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10288.253.1

>prot_F-distichus_contig10288.253.1 ID=prot_F-distichus_contig10288.253.1|Name=mRNA_F-distichus_contig10288.253.1|organism=Fucus distichus monoicous|type=polypeptide|length=191bp
MQHHGRGKRKVKAKVLYNILERVSSEDELKYAHLGLELFKKQEIKLSKKA
GSLFLKACCKAGSPQAAVHALEEAEKYGLHEESVVSAHRFNHLLSQLYKA
GDEDSFRRAVAEARSRPEMLNRRSHFLVDSFEAESRARGEEERKRKEAEE
EEEQKARLEAEEKAVVEAEEKSRVEVEEAKAKQEAEEAKA*
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mRNA from alignment at F-distichus_contig10288:3470..5867-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10288.253.1 ID=mRNA_F-distichus_contig10288.253.1|Name=mRNA_F-distichus_contig10288.253.1|organism=Fucus distichus monoicous|type=mRNA|length=2398bp|location=Sequence derived from alignment at F-distichus_contig10288:3470..5867- (Fucus distichus monoicous)
CGGAAAGTGTACACGTCCAGCAGTCGGTGCGACGGCTGAGCGAAACCAAC
GCAGCTCAGCGAACAGACGCTGACGACCCGCCGTACCGAACACCCGGCAC
TCCGGCTCCGGGACGGGAGCAAACCCTCGGGGAGGCGTTCGCCGCTATGC
AGCACCACGGGAGGGGGAAAAGGAAGGTGAAGTGCAGTCGCTGTGATCCG
ATCGAAATATCGATGGGAGTGTAATCGCTACAGTGTGACATAAGAAACTG
CAGAGTACCTGTAGCTCTCTTATATAGCTCTATACGGTATATAGACACGT
TACAATTATTAGTATTGTTAGTACCGCAGAACAAGTATTCGAGGGGGACT
CTTTGGCGTAGGACAACCTTTTGTGTACCAAGATGAACTCTTATGATCGC
GTGGCGCTCTGGCACTGTCGGTATATTCAATTGCCCCACTTTGTAAAAAA
TGCGCCGAGGACGACTGTAAGATTTCTGAACCTAATTTACACCCTGACGT
GTCGTGGGCAGGTGAAGGCGAAGGTGCTCTACAATATCTTGGAGCGAGTA
TCTTCCGAGGACGAGCTCAAGTACGCCCACTTGGGCCTGGAGCTCTTCAA
GAAGCAGGAGATCAAGCTCAGCAAAAAGGCTGGCAGCCTGTTTCTCAAGG
TTTGGGACTTCTTTCAAATGCAAGACATTATAAGGCCAGGGTGTGTATGT
TGTCTTTTCATCACGTAGTCTCAACCTCTCGGCGGGCGGCGGCGGGCGGC
ATCCTGAGCGACCAAACACCATCAAGTTTCCGGCGTCCGCCGAAGTTGTT
TTGGAGGTGGGTGAATTCTTCCCAGAAATCAGCGTCATGGTCTTCGAAAT
ACCTTCCCGATGCTGTCGTCGCACGATCTCATTAAAGCGTTGTCGCTTCG
TCTGATGCACCTCCTTCACAGGCTTGCTGCAAGGCAGGATCACCTCAGGC
GGCCGTGCATGCCCTGGAGGAAGCGGAAAAGTACGGGTTGCACGAGGAGA
GCGTCGTCAGTGCTCACCGCTTCAATCATCTCCTGAGCCAGCTCTACAAG
GCAGGCGACGAAGATTGTGAGTCCATCATCAGGGACTACCGGAAGTATCG
GAGTCTTACCACACCCCCTAGACTGACTTTTCAGGCTCGATTGCTCCACA
ACCAAGAGGGGGTGCCAATGCCGAAAAGGGCGGTCTTCGAAAGATCTCGT
CGAGAGCTATCTTTCGACGTATCGGTCGGTGTTCACATCCTTTTGGTCGC
GGAGCAATCGAGCCTGGAAAGTCAGTCTAGGGGATGCGCCACCCATAGCC
CTTGGCGATGTCGAAGTGCACGGTGAATGTATTTGGTAAACAAGGAAGCG
TGTACCGCCGATCTCGACTTATGTCTTTTTTCATACTAATAAAAACATTT
TAACTTGCGTTTGGATCGATGCGTGTTCGCGCTGTGCGGCAGCCTTCCGC
CGAGCGGTCGCGGAAGCCAGGTCTCGACCGGAAATGCTTAACCGGAGGTC
GCACTTCCTTGTCGACAGCTTTGAGGCGGAGTCGAGGGCGAGAGGGGAGG
AGGAGCGAAAGAGGAAGGAGGCAGAGGAGGAAGAGGAACAAAAGGCTCGG
CTAGAGGCGGAAGAGAAGGCCGTGGTCGAGGCGGAAGAGAAGAGTCGGGT
CGAAGTAGAGGAGGCCAAGGCTAAGCAGGAGGCGGAGGAGGCCAAGGCTT
AGCAGCAGGTGGAGGAAATCAGGGCAATGAAGAGGTGAAGGGGGCCAAGG
CTTGGCAGGGGGTGGAGGAAATCAAGGCCAAGGCAGGGCGTTGAAGAGGC
CTAGACTAGACAGGAGGCTGGAGTATCGATGGCCGGGCAAGGAGTAGAGG
GTGCGGCGGCCACTCAGGAGGATGTGAAGAACAAGGCAACGATGCCTGAG
GCGAGCCCAGATTTAGTGGATCAACAAGGTTCAGAGGATTTGAACCAGTG
GAAGCCGAGTCATCAACAGAGAAAGCGAAAATCGTAAATAAACTGGCCAG
TAGTATGGTGGAGACGACGATAATTTTAGACTGGCCATTGAGATTTAAAG
TGTATCATTTGGTAACTGAATGCGAGCGAGCGAGGGGAGTGGAGAGAAGA
GAAATCATACACATACAATGTGCACTTGATAGCCGAATGCTTTACCTTTA
CCTTAAAGGGGACCACCAAAGGGTTAATTGGAGCTGTGTGTAGTAGAGTC
AATGGATGTGTCGCGCACTTGGCGACAGACGTACTAAAAGAACCCTACCA
AAATCATGGCACCTGCTACAAGAGCCACAGTCCTCGCCGGGAGTAAGTAC
TGTGCTCTCGTGCGAAGGTACAGGCAGGTAACACTTCATAAAGTAATGAT
GAGAGTGTTGGTAGGTACAGTATAGTTCATGGTTGTAATACTGTAATA
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Coding sequence (CDS) from alignment at F-distichus_contig10288:3470..5867-

>mRNA_F-distichus_contig10288.253.1 ID=mRNA_F-distichus_contig10288.253.1|Name=mRNA_F-distichus_contig10288.253.1|organism=Fucus distichus monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at F-distichus_contig10288:3470..5867- (Fucus distichus monoicous)
ATGCAGCACCACGGGAGGGGGAAAAGGAAGATGCAGCACCACGGGAGGGG
GAAAAGGAAGGTGAAGGCGAAGGTGCTCTACAATATCTTGGAGCGAGTAT
CTTCCGAGGACGAGCTCAAGTACGCCCACTTGGGCCTGGAGCTCTTCAAG
AAGCAGGAGATCAAGCTCAGCAAAAAGGCTGGCAGCCTGTTTCTCAAGGT
GAAGGCGAAGGTGCTCTACAATATCTTGGAGCGAGTATCTTCCGAGGACG
AGCTCAAGTACGCCCACTTGGGCCTGGAGCTCTTCAAGAAGCAGGAGATC
AAGCTCAGCAAAAAGGCTGGCAGCCTGTTTCTCAAGGCTTGCTGCAAGGC
AGGATCACCTCAGGCGGCCGTGCATGCCCTGGAGGAAGCGGAAAAGTACG
GGTTGCACGAGGAGAGCGTCGTCAGTGCTCACCGCTTCAATCATCTCCTG
AGCCAGCTCTACAAGGCAGGCGACGAAGATTGCTTGCTGCAAGGCAGGAT
CACCTCAGGCGGCCGTGCATGCCCTGGAGGAAGCGGAAAAGTACGGGTTG
CACGAGGAGAGCGTCGTCAGTGCTCACCGCTTCAATCATCTCCTGAGCCA
GCTCTACAAGGCAGGCGACGAAGATTCCTTCCGCCGAGCGGTCGCGGAAG
CCAGGTCTCGACCGGAAATGCTTAACCGGAGGTCGCACTTCCTTGTCGAC
AGCTTTGAGGCGGAGTCGAGGGCGAGAGGGGAGGAGGAGCGAAAGAGGAA
GGAGGCAGAGGAGGAAGAGGAACAAAAGGCTCGGCTAGAGGCGGAAGAGA
AGGCCGTGGTCGAGGCGGAAGAGAAGAGTCGGGTCGAAGTAGAGGAGGCC
AAGGCTAAGCAGGAGGCGGAGGAGGCCAAGGCTTAGCCTTCCGCCGAGCG
GTCGCGGAAGCCAGGTCTCGACCGGAAATGCTTAACCGGAGGTCGCACTT
CCTTGTCGACAGCTTTGAGGCGGAGTCGAGGGCGAGAGGGGAGGAGGAGC
GAAAGAGGAAGGAGGCAGAGGAGGAAGAGGAACAAAAGGCTCGGCTAGAG
GCGGAAGAGAAGGCCGTGGTCGAGGCGGAAGAGAAGAGTCGGGTCGAAGT
AGAGGAGGCCAAGGCTAAGCAGGAGGCGGAGGAGGCCAAGGCTTAG
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