mRNA_F-distichus_contig10268.236.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig10268.236.1 vs. uniprot
Match: D7G6T7_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T7_ECTSI) HSP 1 Score: 249 bits (637), Expect = 3.520e-71 Identity = 128/266 (48.12%), Postives = 160/266 (60.15%), Query Frame = 2
Query: 2 CGNNYGWVRFEGSRCTEYSEDAYGPCADVDRSGITPPAFEYCHVDYDSSPSSEDEYTGGNDICGDRSIVGNTVIGGHVYRGQAFFDLLYGAYVFADHSLRNIYYIKMNDDGTWDKGTIISDRSVAVLSFAEDMNGELFIIDSNSEILYLPCGDLCIDPDIPEDDDTASYTYLGCYGD--------NKDRIFSGNSLQQYAEMTTEFCSGFCQ--GSAYFGTQYNRECWCGEATDDPTILGTTTCNKPCFGDASQICGGTWAMSVYE 769
CGNNYGW RFEGSRC E E GPC D DRS T P +EYCH DY S + E ++ G DICG R + G VIGG+VYRG F D+LYGAYVF D++ NIYYI + D+G W GTIISD SV+V+ FAED NGEL +ID + I LPCGD+C + + D +Y LGC+ D N D I + L M+ C+ +C G+ Y G QY EC+CG +D +TTCN C G S+ CGG +++ VYE
Sbjct: 348 CGNNYGWSRFEGSRCQEAQESRDGPCLDTDRSAFTFPIYEYCHPDYSSDDADEADFVAGVDICGTRMVSGTAVIGGYVYRGTYFADVLYGAYVFGDNTSNNIYYI-VQDNGVWSVGTIISDSSVSVIGFAEDNNGELMVIDQDYNIYQLPCGDMCASTCLDQSDQQPTYESLGCFVDVLGDRALENDDAIRA--CLVDERVMSPAICASYCYTLGATYAGVQYGFECFCGVDSDYSRHGTSTTCNMECTGYPSESCGGVFSIEVYE 610
BLAST of mRNA_F-distichus_contig10268.236.1 vs. uniprot
Match: D7G4P3_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P3_ECTSI) HSP 1 Score: 238 bits (608), Expect = 6.750e-67 Identity = 121/265 (45.66%), Postives = 166/265 (62.64%), Query Frame = 2
Query: 2 CGNNYGWVRFEGSRCTEYSED-AYGPCAD-VDRSGITPPAFEYCHVDYDSSPSSEDEYTGGNDICGDRSIVGNTVIGGHVYRGQAFFDLLYGAYVFADHSLRNIYYIKMNDDGTWDKGTIISDRSVAVLSFAEDMNGELFIIDSNSEILYLPCGDLCIDPDIPEDDDTASYTYLGCYGDNKDRIFSGNSLQQYAE----MTTEFCSGFC--QGSAYFGTQYNRECWCGEATDDPTILGT---TTCNKPCFGDASQICGGTWAMSV 763
CGNNYGW RFEGSRC E ED + P D + RSG T P +EYCH DY S+ +DE+T GNDICGDR ++GN VIGG+VYRG F DLL GAY+F D +++NIYY+ + +DG W GTIISD SV ++SF+ED+NGE+ ++D I ++PCGDLC + + +D +Y +GC+ D D + E M+ C+ +C QG+ YFG +++ EC+CG +T D G+ + C C + Q CGG A+ V
Sbjct: 411 CGNNYGWSRFEGSRCQEAVEDNEFNPACDGISRSGFTFPLYEYCHPDYQST--GDDEFTAGNDICGDRVLLGNAVIGGYVYRGNYFSDLLNGAYIFGDSTMKNIYYL-VEEDGGWSLGTIISDASVQIISFSEDINGEIVLLDLQHNIYHMPCGDLCATTCLDQTEDQPTYDSVGCFADEVDDRALPDQADNCGEGETAMSPSICASYCETQGATYFGVEFSYECFCGSSTADFDKHGSLPDSECEYLCDANPDQFCGGFGAIEV 672
BLAST of mRNA_F-distichus_contig10268.236.1 vs. uniprot
Match: D7G961_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G961_ECTSI) HSP 1 Score: 225 bits (573), Expect = 1.450e-60 Identity = 117/266 (43.98%), Postives = 159/266 (59.77%), Query Frame = 2
Query: 2 CGNNYGWVRFEGSRCTEYSEDAY--GPCADVDRSGITPPAFEYCHVDYDSSPSSEDEYTGGNDICGDRSIVGNTVIGGHVYRGQAFFDLLYGAYVFADHSLRNIYYIKMNDDGTWDKGTIISDRSVAVLSFAEDMNGELFIIDSNSEILYLPCGDLCIDPDIPEDDDTASYTYLGCYGDN-KDRIF---SGNSLQQYAEMTTEFCSGFCQ--GSAYFGTQYNRECWCGEATDDPTILGTTTCNKPCFGDASQICGGTWAMSVYEYE 775
CGNNYGW RFEGSRC E +D PC VDRS T P FEYCH D+DS+ + E E+TGG D CG+R +VGN VIGG+VYRG F DLL GAY+F D ++RNIY++K +DG W GTI+SD SV ++SFAED+NGE+ ++D N +I ++PCGDLC+ + + +D +Y LGC+ D+ DR + N M+ C+ +C+ GS +FG QY+ + + + CGG M V+ E
Sbjct: 329 CGNNYGWSRFEGSRCQEAVQDNEFNPPCDGVDRSDFTYPLFEYCHPDFDSTDADEQEFTGGADTCGNRFVVGNCVIGGYVYRGNFFSDLLDGAYIFGDSTMRNIYFLKEEEDG-WAVGTIVSDASVQIISFAEDVNGEIVLLDYNHDIYHMPCGDLCVTTCLDQAEDQPAYESLGCFADDVNDRALPTEADNCGVGETAMSPAICASYCETLGSTFFGVQYSFQAY-----------------------PDEFCGGFSTMEVFTIE 570
BLAST of mRNA_F-distichus_contig10268.236.1 vs. uniprot
Match: A0A6H5KT40_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT40_9PHAE) HSP 1 Score: 197 bits (501), Expect = 1.630e-53 Identity = 95/171 (55.56%), Postives = 121/171 (70.76%), Query Frame = 2
Query: 2 CGNNYGWVRFEGSRCTEYSEDAY--GPCADVDRSGITPPAFEYCHVDYDSSPSSEDEYTGGNDICGDRSIVGNTVIGGHVYRGQAFFDLLYGAYVFADHSLRNIYYIKMNDDGTWDKGTIISDRSVAVLSFAEDMNGELFIIDSNSEILYLPCGDLCIDPDIPEDDDTASY 508
CGNNYGW RFEGSRC E +D PC VDRSG T P FEYCH DYDS+ + E E+TGG D CGDR +VGN VIGG+VYRG F DLL GAY+F D ++RNIY+++ + G W GTIISD SV ++SFAED+NGE+ ++D + ++PCGDLC + + +D +Y
Sbjct: 288 CGNNYGWSRFEGSRCQEAVQDNEFNPPCDGVDRSGFTYPLFEYCHPDYDSTDADEQEFTGGADTCGDRFVVGNCVIGGYVYRGNFFSDLLDGAYIFGDSTMRNIYFLREEEAG-WAVGTIISDASVQIVSFAEDVNGEIMMLDYQHRMYHMPCGDLCATTCLEQAEDQPTY 457
BLAST of mRNA_F-distichus_contig10268.236.1 vs. uniprot
Match: D7FJP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP1_ECTSI) HSP 1 Score: 193 bits (490), Expect = 3.240e-49 Identity = 106/273 (38.83%), Postives = 155/273 (56.78%), Query Frame = 2
Query: 2 CGNNYGWVRFEGSRCTEYSEDAYG-PCADVDRSGITPPAFEYCHVDYDSSPSSEDEYTGGNDICGDRSIVGNTVIGGHVYRGQAFFDLLYGAYVFADHSLRNIYYIKMNDDGTWDKGTIISDRSVAVLSFAEDMNGELFIIDSNSEILYLPCGDLCIDPD---------IPEDDDTASYTYLGCYGDNKDRIFSGNSLQQY-AEMTTEFCSGFC---QGSAYFGTQYNRECWCGEATDDPTILGT----TTCNKPCFGDASQICGGTWAMSVY 766
CG +YGW FEGSRC + E G C+ +DR+ P FEYCHVDYDSS ++E+ D CGDR++ G +VIGGHVYRG + D+L G Y+FADHS+ +++++ G W GT++S + FAE +GEL+++ I LPCGDLC + +P+ D T ++ +GC+ D + + + ++ M E C+ FC +G+ +FG QY REC+CG DD G C+ PC G +Q+CGG M+V+
Sbjct: 421 CGKDYGWRMFEGSRCNDGFEGYDGGECSGLDRADYAFPVFEYCHVDYDSS---QEEF----DACGDRTVTGLSVIGGHVYRGAKYDDILGGHYIFADHSVGSLHHLAPAAGGGWTAGTVLSSIP-KIGGFAEGNDGELYMVGYQGNIYDLPCGDLCESGEEQKEASSACLPQSDTTPTFEEIGCFLDGEPKTMTLSTAPGCDGTMNAEMCASFCATVEGATHFGLQYQRECYCGGEGDDYVQYGDQLDDAECDMPCSGFPTQMCGGRSKMNVF 685
BLAST of mRNA_F-distichus_contig10268.236.1 vs. uniprot
Match: A0A6H5JZF5_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF5_9PHAE) HSP 1 Score: 162 bits (410), Expect = 2.190e-40 Identity = 82/136 (60.29%), Postives = 98/136 (72.06%), Query Frame = 2
Query: 2 CGNNYGWVRFEGSRCTEYSED-AYGP-CADVDRSGITPPAFEYCHVDYDSSPSSEDEYTGGNDICGDRSIVGNTVIGGHVYRGQAFFDLLYGAYVFADHSLRNIYYIKMNDDGTWDKGTIISDRSVAVLSFAEDMN 403
CGNNYGW RFEGSRC E E+ Y P C VDRSG T P +EYCH DY S +DE+T G DICGDR ++GN VIGG+VYRG F DLLYG Y+F D +++NI+Y+ DG W GTIISD SV ++SFAED+N
Sbjct: 348 CGNNYGWSRFEGSRCQEAVENNEYNPPCDGVDRSGFTFPLYEYCHPDYSSV--GDDEFTAGVDICGDRVLLGNAVIGGYVYRGNFFSDLLYGHYIFGDSTMKNIFYLVKEGDG-WSLGTIISDASVQIISFAEDVN 480
BLAST of mRNA_F-distichus_contig10268.236.1 vs. uniprot
Match: D7G960_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G960_ECTSI) HSP 1 Score: 145 bits (367), Expect = 4.860e-34 Identity = 87/265 (32.83%), Postives = 119/265 (44.91%), Query Frame = 2
Query: 2 CGNNYGWVRFEGSRCTEYSEDAY--GPCADVDRSGITPPAFEYCHVDYDSSPSSEDEYTGGNDICGDRSIVGNTVIGGHVYRGQAFFDLLYGAYVFADHSLRNIYYIKMNDDGTWDKGTIISDRSVAVLSFAEDMNGELFIIDSNSEILYLPCGDLCIDPDIPEDDDTASYTYLGCYGDNKDRIFSGNSLQQYAEMTTEFCSGFCQ--GSAYFGTQYNRECWCGEATDDPT---ILGTTTCNKPCFGDASQICGGTWAMSVYEYE 775
CGNNYGW RFEGSRC E +D PC + RSG T P FEYCH D+DS+ + E ++TGG D CG+R + DDG W GTIISD S+ ++SFAED +GE+ ++D N I +PCG+LC + + +D +Y E C+ C+ GS + G Q + +C+CG +T D L + C C CGG M V+ +
Sbjct: 249 CGNNYGWSRFEGSRCQEAVQDNEFNPPCDGISRSGFTFPLFEYCHPDFDSTDADEQKFTGGADTCGNRFVE--------------------------------------KDDGGWAVGTIISDASIQIISFAEDADGEIMLLDYNHNIYPMPCGNLCATICLDQAEDLPAY---------------------------EICASHCKTLGSTFSGVQNSFQCFCGPSTADYAKHGSLSSDNCEYLCHAHPEDFCGGFSTMEVFRID 448
BLAST of mRNA_F-distichus_contig10268.236.1 vs. uniprot
Match: D7G957_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G957_ECTSI) HSP 1 Score: 114 bits (284), Expect = 7.060e-23 Identity = 60/166 (36.14%), Postives = 94/166 (56.63%), Query Frame = 2
Query: 296 LRNIYYIKMNDDGTWDKGTIISDRSVAVLSFAEDMNGELFIIDSNSEILYLPCGDLCIDPDIPEDDDTASYTYLGCYGDN-KDR---IFSGNSLQQYAEMTTEFCSGFCQ--GSAYFGTQYNRECWCGEAT---DDPTILGTTTCNKPCFGDASQICGGTWAMSVY 766
+ NIY+++ +DG W GTIISD SV ++SFAED+NGE+ ++D + ++PCGDLC + + +D +Y LGCY D+ DR I N + M+ C+ +C+ GS +FG Q++ +C+CG +T D L + C C + CGG + V+
Sbjct: 362 IENIYFLREEEDG-WAVGTIISDASVQIVSFAEDVNGEIMLLDYQHNMYHMPCGDLCATTCLDQAEDQPTYESLGCYADDVNDRALPIQGPNCGEGETAMSPAICASYCETLGSTFFGVQFSFQCFCGPSTADYDKHGSLSSDNCEYLCDANPDFFCGGFSTIEVF 526
BLAST of mRNA_F-distichus_contig10268.236.1 vs. uniprot
Match: A0A6H5KQV8_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV8_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 9.350e-19 Identity = 52/101 (51.49%), Postives = 59/101 (58.42%), Query Frame = 2
Query: 470 DPDIPEDDDTASYTYLGCYGDNKD-RIFSGNSLQQYAEMTTEFCSGFCQGSAYFGTQYNRECWCGEATDDPTILGTTTCNKPCFGDASQICGGTWAMSVYE 769
D D E DD + YLGCY D D R+F A MT E CS C GSAY+GTQY+ ECWCG D G C+ PC GDA +ICGG +AMSVYE
Sbjct: 154 DADDGESDDPS---YLGCYSDPADSRVFVQGVSS--AAMTAEICSAACAGSAYYGTQYSVECWCGAEGADYDANGAGVCDMPCGGDADEICGGFYAMSVYE 249
BLAST of mRNA_F-distichus_contig10268.236.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI) HSP 1 Score: 100 bits (249), Expect = 1.680e-18 Identity = 43/92 (46.74%), Postives = 62/92 (67.39%), Query Frame = 2
Query: 506 YTYLGCYGDNKDRIFSGNSLQQY-AEMTTEFCSGFCQGSAYFGTQYNRECWCGEATDDPTILGTTT-CNKPCFGDASQICGGTWAMSVYEYE 775
Y++ GCY D+ DR+ SG+S+ + MTT +C+ FC+GS YFG Q+ EC+C + D P LG + C C GD+S+ICGG++A+ VYEY
Sbjct: 177 YSFAGCYVDSPDRVLSGDSMMSVNSVMTTAYCADFCEGSDYFGVQFGYECFCSSSGDTPDELGESEDCEMACSGDSSEICGGSYAIQVYEYS 268 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10268.236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig10268.236.1 >prot_F-distichus_contig10268.236.1 ID=prot_F-distichus_contig10268.236.1|Name=mRNA_F-distichus_contig10268.236.1|organism=Fucus distichus monoicous|type=polypeptide|length=157bp MNDDGTWDKGTIISDRSVAVLSFAEDMNGELFIIDSNSEILYLPCGDLCIback to top mRNA from alignment at F-distichus_contig10268:2326..5594- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig10268.236.1 ID=mRNA_F-distichus_contig10268.236.1|Name=mRNA_F-distichus_contig10268.236.1|organism=Fucus distichus monoicous|type=mRNA|length=3269bp|location=Sequence derived from alignment at F-distichus_contig10268:2326..5594- (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig10268:2326..5594- >mRNA_F-distichus_contig10268.236.1 ID=mRNA_F-distichus_contig10268.236.1|Name=mRNA_F-distichus_contig10268.236.1|organism=Fucus distichus monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at F-distichus_contig10268:2326..5594- (Fucus distichus monoicous)back to top |