mRNA_F-distichus_contig102678.235.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102678.235.1
Unique NamemRNA_F-distichus_contig102678.235.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102678.235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102678contigF-distichus_contig102678:1487..2020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size534
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102678.235.1prot_F-distichus_contig102678.235.1Fucus distichus monoicouspolypeptideF-distichus_contig102678 1500..1835 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928943.7127454-UTR-F-distichus_contig102678:1486..14991622928943.7127454-UTR-F-distichus_contig102678:1486..1499Fucus distichus monoicousUTRF-distichus_contig102678 1487..1499 +
1690885076.3284328-UTR-F-distichus_contig102678:1486..14991690885076.3284328-UTR-F-distichus_contig102678:1486..1499Fucus distichus monoicousUTRF-distichus_contig102678 1487..1499 +
1622928943.7433295-UTR-F-distichus_contig102678:1835..20201622928943.7433295-UTR-F-distichus_contig102678:1835..2020Fucus distichus monoicousUTRF-distichus_contig102678 1836..2020 +
1690885076.3560123-UTR-F-distichus_contig102678:1835..20201690885076.3560123-UTR-F-distichus_contig102678:1835..2020Fucus distichus monoicousUTRF-distichus_contig102678 1836..2020 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928943.7274296-CDS-F-distichus_contig102678:1499..18351622928943.7274296-CDS-F-distichus_contig102678:1499..1835Fucus distichus monoicousCDSF-distichus_contig102678 1500..1835 +
1690885076.341196-CDS-F-distichus_contig102678:1499..18351690885076.341196-CDS-F-distichus_contig102678:1499..1835Fucus distichus monoicousCDSF-distichus_contig102678 1500..1835 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102678.235.1

>prot_F-distichus_contig102678.235.1 ID=prot_F-distichus_contig102678.235.1|Name=mRNA_F-distichus_contig102678.235.1|organism=Fucus distichus monoicous|type=polypeptide|length=112bp
MKFITLQNLKKSFVPLVQIIKTRPDQPPRGHVLAPPQTLTLTSTTGIHAD
RQLQTQLQSVPPSQVTGREAQVYARRNSSLFDHVMWVMTEKGLGGPDSLP
HTHDTMTGIEG*
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mRNA from alignment at F-distichus_contig102678:1487..2020+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102678.235.1 ID=mRNA_F-distichus_contig102678.235.1|Name=mRNA_F-distichus_contig102678.235.1|organism=Fucus distichus monoicous|type=mRNA|length=534bp|location=Sequence derived from alignment at F-distichus_contig102678:1487..2020+ (Fucus distichus monoicous)
TCGCCGCCCGACCATGAAGTTCATCACCCTCCAGAATTTGAAGAAGTCAT
TCGTTCCACTGGTCCAGATCATCAAAACCAGGCCAGACCAGCCACCACGT
GGTCATGTACTTGCCCCTCCCCAGACATTGACATTGACATCAACCACCGG
AATACATGCCGACAGACAGTTACAGACACAGTTACAGTCAGTTCCCCCAT
CACAGGTCACAGGTCGAGAAGCACAGGTGTACGCCAGGCGCAATTCTAGT
CTCTTCGACCATGTGATGTGGGTTATGACAGAGAAGGGCCTCGGGGGGCC
GGACAGTCTTCCCCACACACATGATACTATGACTGGTATAGAGGGGTGAA
ACGGAACACGCGCGCTTGAGTGTCCTCCCGACCAGGACACGGTACAATAT
ACAATATACAAAAATACCTCCCTTAGTCTTCAACAAGAGAATTATTGTTG
CAACTTCAACACGAGCAGTAAAAAGTGCATGAAAATGAGAGAAACTGGCT
TTCGCGAGCTCTATGCGCGTCCTGAACAACCGGA
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Coding sequence (CDS) from alignment at F-distichus_contig102678:1487..2020+

>mRNA_F-distichus_contig102678.235.1 ID=mRNA_F-distichus_contig102678.235.1|Name=mRNA_F-distichus_contig102678.235.1|organism=Fucus distichus monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at F-distichus_contig102678:1487..2020+ (Fucus distichus monoicous)
ATGAAGTTCATCACCCTCCAGAATTTGAAGAAGTCATTCGTTCCACTGGT
CCAGATCATCAAAACCAGGCCAGACCAGCCACCACGTGGTCATGTACTTG
CCCCTCCCCAGACATTGACATTGACATCAACCACCGGAATACATGCCGAC
AGACAGTTACAGACACAGTTACAGTCAGTTCCCCCATCACAGGTCACAGG
TCGAGAAGCACAGGTGTACGCCAGGCGCAATTCTAGTCTCTTCGACCATG
TGATGTGGGTTATGACAGAGAAGGGCCTCGGGGGGCCGGACAGTCTTCCC
CACACACATGATACTATGACTGGTATAGAGGGGTGAATGAAGTTCATCAC
CCTCCAGAATTTGAAGAAGTCATTCGTTCCACTGGTCCAGATCATCAAAA
CCAGGCCAGACCAGCCACCACGTGGTCATGTACTTGCCCCTCCCCAGACA
TTGACATTGACATCAACCACCGGAATACATGCCGACAGACAGTTACAGAC
ACAGTTACAGTCAGTTCCCCCATCACAGGTCACAGGTCGAGAAGCACAGG
TGTACGCCAGGCGCAATTCTAGTCTCTTCGACCATGTGATGTGGGTTATG
ACAGAGAAGGGCCTCGGGGGGCCGGACAGTCTTCCCCACACACATGATAC
TATGACTGGTATAGAGGGGTGA
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