mRNA_F-distichus_contig102634.229.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102634.229.1
Unique NamemRNA_F-distichus_contig102634.229.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig102634.229.1 vs. uniprot
Match: UPI000C7950E8 (proteasome activator complex subunit 4B-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C7950E8)

HSP 1 Score: 72.4 bits (176), Expect = 1.620e-13
Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 DETHLFILQLLSEVIGVKNVGVFRSRGRDILPWVEDICSVLDCTLSLGLKDEY 159
            DE   F LQLL+EVI VKNV ++RSRG DILP++  ICSVLD TL+L  KDEY
Sbjct:  167 DEELQFNLQLLAEVISVKNVQIYRSRGSDILPYIPQICSVLDVTLNLTQKDEY 219
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102634.229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI000C7950E81.620e-1366.04proteasome activator complex subunit 4B-like n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102634contigF-distichus_contig102634:138..299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928943.2542877-CDS-F-distichus_contig102634:137..2991622928943.2542877-CDS-F-distichus_contig102634:137..299Fucus distichus monoicousCDSF-distichus_contig102634 138..299 +
1690885076.107634-CDS-F-distichus_contig102634:137..2991690885076.107634-CDS-F-distichus_contig102634:137..299Fucus distichus monoicousCDSF-distichus_contig102634 138..299 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102634.229.1prot_F-distichus_contig102634.229.1Fucus distichus monoicouspolypeptideF-distichus_contig102634 138..299 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102634.229.1

>prot_F-distichus_contig102634.229.1 ID=prot_F-distichus_contig102634.229.1|Name=mRNA_F-distichus_contig102634.229.1|organism=Fucus distichus monoicous|type=polypeptide|length=54bp
DETHLFILQLLSEVIGVKNVGVFRSRGRDILPWVEDICSVLDCTLSLGLK
DEY*
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mRNA from alignment at F-distichus_contig102634:138..299+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102634.229.1 ID=mRNA_F-distichus_contig102634.229.1|Name=mRNA_F-distichus_contig102634.229.1|organism=Fucus distichus monoicous|type=mRNA|length=162bp|location=Sequence derived from alignment at F-distichus_contig102634:138..299+ (Fucus distichus monoicous)
GATGAGACTCACCTCTTCATCTTGCAGTTGTTGAGTGAGGTTATTGGTGT
CAAAAATGTTGGTGTCTTTAGGAGCAGAGGGCGGGACATCCTGCCATGGG
TGGAGGACATCTGCTCTGTGCTGGACTGCACCCTCAGCTTGGGTCTGAAG
GACGAGTACTAG
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Coding sequence (CDS) from alignment at F-distichus_contig102634:138..299+

>mRNA_F-distichus_contig102634.229.1 ID=mRNA_F-distichus_contig102634.229.1|Name=mRNA_F-distichus_contig102634.229.1|organism=Fucus distichus monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at F-distichus_contig102634:138..299+ (Fucus distichus monoicous)
GATGAGACTCACCTCTTCATCTTGCAGTTGTTGAGTGAGGTTATTGGTGT
CAAAAATGTTGGTGTCTTTAGGAGCAGAGGGCGGGACATCCTGCCATGGG
TGGAGGACATCTGCTCTGTGCTGGACTGCACCCTCAGCTTGGGTCTGAAG
GACGAGTACTAGGATGAGACTCACCTCTTCATCTTGCAGTTGTTGAGTGA
GGTTATTGGTGTCAAAAATGTTGGTGTCTTTAGGAGCAGAGGGCGGGACA
TCCTGCCATGGGTGGAGGACATCTGCTCTGTGCTGGACTGCACCCTCAGC
TTGGGTCTGAAGGACGAGTACTAG
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