mRNA_F-distichus_contig102620.227.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102620.227.1
Unique NamemRNA_F-distichus_contig102620.227.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig102620.227.1 vs. uniprot
Match: D7FTK5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK5_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 1.470e-7
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   10 FVAFFSGLVQLLAKTAQGEMMRFCGMRSNLVVIVKSIKFLELVSSNMLAFTNLAICINLALII 198
            F  + SGLV  L    +  M+  C   S+L+  +K++KF+E VSSNM+A T+LAIC+NLALI+
Sbjct:   54 FAHWLSGLVWGLCFVVEDMMVTVCWTESDLIGFIKAVKFIEFVSSNMMAITHLAICVNLALIV 116          
BLAST of mRNA_F-distichus_contig102620.227.1 vs. uniprot
Match: A0A6H5JZY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZY2_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.800e-7
Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 1
Query:   19 FFSGLVQLLAKTAQGEMMRFCGMRSNLVVIVKSIKFLELVSSNMLAFTNLAICINLALII 198
            F  GL+  L    Q  M+  C   +NL+ ++K+ KFLEL S NMLA TNLAICINLAL++
Sbjct:    8 FSCGLLYQLLILMQATMISVCWAGANLIKLIKTFKFLELASVNMLATTNLAICINLALVV 67          
BLAST of mRNA_F-distichus_contig102620.227.1 vs. uniprot
Match: D8LNM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNM4_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 4.540e-7
Identity = 30/67 (44.78%), Postives = 42/67 (62.69%), Query Frame = 1
Query:   10 FVAFFSGLVQLLAKTAQGEMMRFCGMRSNLVVIVKSIKFLELVSSNMLAFTNLAICINLALIIYVRR 210
            F  + SGL+  L    +  M+  C    +L  ++K++KF EL +SNMLA TNLAIC+NLALI+   R
Sbjct:   80 FSHWLSGLLHQLVFMTEATMVSVCWAGDSLTKLIKTLKFFELAASNMLAITNLAICVNLALIVMSHR 146          
BLAST of mRNA_F-distichus_contig102620.227.1 vs. uniprot
Match: D8LNN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNN5_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 5.810e-7
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 1
Query:   25 SGLVQLLAKTAQGEMMRFCGMRSNLVVIVKSIKFLELVSSNMLAFTNLAICINLALII 198
            SG V  L+   +  M+  C   SNL+ ++K IKFLEL ++NMLA TNL ICINLALI+
Sbjct:   21 SGAVLGLSYLTEDVMVSSCYAASNLLGLIKFIKFLELAAANMLAITNLGICINLALIV 78          
BLAST of mRNA_F-distichus_contig102620.227.1 vs. uniprot
Match: D8LNM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNM5_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 2.200e-6
Identity = 26/47 (55.32%), Postives = 35/47 (74.47%), Query Frame = 1
Query:   58 QGEMMRFCGMRSNLVVIVKSIKFLELVSSNMLAFTNLAICINLALII 198
            Q  M+  C   +NL+ ++K+ KFLEL S NMLA TNLAIC+NLAL++
Sbjct:    2 QATMISVCWTGANLIKLIKTFKFLELASVNMLAMTNLAICMNLALVV 48          
BLAST of mRNA_F-distichus_contig102620.227.1 vs. uniprot
Match: D8LNP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNP0_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 2.670e-6
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 1
Query:   67 MMRFCGMRSNLVVIVKSIKFLELVSSNMLAFTNLAICINLALIIYVRR 210
            M+  C    NL   +K++KFLEL +SNMLA TNLAIC+NL+LI+  RR
Sbjct:    1 MISVCWAGENLATFIKTLKFLELFASNMLAITNLAICVNLSLIVMSRR 48          
BLAST of mRNA_F-distichus_contig102620.227.1 vs. uniprot
Match: D8LNN1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNN1_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 8.530e-6
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 1
Query:   67 MMRFCGMRSNLVVIVKSIKFLELVSSNMLAFTNLAICINLALIIYVRR 210
            M+  C   SN+   VK++KFLELV+SNMLA TNLAIC NLAL+I   R
Sbjct:    1 MVLVCWAGSNVTGFVKALKFLELVASNMLAITNLAICANLALVIMSHR 48          
BLAST of mRNA_F-distichus_contig102620.227.1 vs. uniprot
Match: A0A6H5JWL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWL8_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 1.560e-5
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 1
Query:   25 SGLVQLLAKTAQGEMMRFCGMRSNLVVIVKSIKFLELVSSNMLAFTNLAICINLALII 198
            SG +  LA   +  M+  C   +NLV ++K+I F+ + SSNMLA TNL ICINLALI+
Sbjct:    9 SGTLVCLALMTEDVMVSACYAATNLVGLIKTINFVMMTSSNMLAATNLGICINLALIV 66          
BLAST of mRNA_F-distichus_contig102620.227.1 vs. uniprot
Match: A0A6H5K8K6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K6_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 2.140e-5
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1
Query:   58 QGEMMRFCGMRSNLVVIVKSIKFLELVSSNMLAFTNLAICINLALII 198
            QG M+  C +   L   +K++K+LE  SSNMLA TNLAICINLAL++
Sbjct:    5 QGTMISVCWVGERLEGFIKALKYLEQTSSNMLAITNLAICINLALVV 51          
BLAST of mRNA_F-distichus_contig102620.227.1 vs. uniprot
Match: D7FTK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK4_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 2.950e-5
Identity = 26/58 (44.83%), Postives = 40/58 (68.97%), Query Frame = 1
Query:   25 SGLVQLLAKTAQGEMMRFCGMRSNLVVIVKSIKFLELVSSNMLAFTNLAICINLALII 198
            +G++  L    +  M+  C    NL  ++K++KF+EL SS+MLA T+LAIC+NLALI+
Sbjct:   10 TGIIWSLCWLVEDMMVTVCWAGKNLEDLIKTVKFVELASSHMLALTHLAICVNLALIV 67          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102620.227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FTK5_ECTSI1.470e-747.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZY2_9PHAE2.800e-751.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNM4_ECTSI4.540e-744.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNN5_ECTSI5.810e-753.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNM5_ECTSI2.200e-655.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNP0_ECTSI2.670e-656.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LNN1_ECTSI8.530e-660.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JWL8_9PHAE1.560e-550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8K6_9PHAE2.140e-555.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTK4_ECTSI2.950e-544.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102620contigF-distichus_contig102620:1765..1974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928943.101582-CDS-F-distichus_contig102620:1764..19741622928943.101582-CDS-F-distichus_contig102620:1764..1974Fucus distichus monoicousCDSF-distichus_contig102620 1765..1974 -
1690885076.08738-CDS-F-distichus_contig102620:1764..19741690885076.08738-CDS-F-distichus_contig102620:1764..1974Fucus distichus monoicousCDSF-distichus_contig102620 1765..1974 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102620.227.1prot_F-distichus_contig102620.227.1Fucus distichus monoicouspolypeptideF-distichus_contig102620 1765..1974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102620.227.1

>prot_F-distichus_contig102620.227.1 ID=prot_F-distichus_contig102620.227.1|Name=mRNA_F-distichus_contig102620.227.1|organism=Fucus distichus monoicous|type=polypeptide|length=70bp
LCCFVAFFSGLVQLLAKTAQGEMMRFCGMRSNLVVIVKSIKFLELVSSNM
LAFTNLAICINLALIIYVRR
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mRNA from alignment at F-distichus_contig102620:1765..1974-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102620.227.1 ID=mRNA_F-distichus_contig102620.227.1|Name=mRNA_F-distichus_contig102620.227.1|organism=Fucus distichus monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at F-distichus_contig102620:1765..1974- (Fucus distichus monoicous)
TTATGCTGTTTCGTTGCCTTCTTCAGCGGGCTTGTGCAACTCCTTGCCAA GACGGCTCAGGGAGAGATGATGAGGTTCTGCGGGATGCGATCCAACCTTG TCGTTATCGTCAAGTCCATCAAGTTCCTTGAGCTGGTCTCGTCCAACATG CTGGCGTTCACAAACCTCGCCATCTGCATCAACCTTGCTCTCATCATTTA CGTGAGAAGA
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Coding sequence (CDS) from alignment at F-distichus_contig102620:1765..1974-

>mRNA_F-distichus_contig102620.227.1 ID=mRNA_F-distichus_contig102620.227.1|Name=mRNA_F-distichus_contig102620.227.1|organism=Fucus distichus monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at F-distichus_contig102620:1765..1974- (Fucus distichus monoicous)
TTATGCTGTTTCGTTGCCTTCTTCAGCGGGCTTGTGCAACTCCTTGCCAA
GACGGCTCAGGGAGAGATGATGAGGTTCTGCGGGATGCGATCCAACCTTG
TCGTTATCGTCAAGTCCATCAAGTTCCTTGAGCTGGTCTCGTCCAACATG
CTGGCGTTCACAAACCTCGCCATCTGCATCAACCTTGCTCTCATCATTTA
CGTGAGAAGATTATGCTGTTTCGTTGCCTTCTTCAGCGGGCTTGTGCAAC
TCCTTGCCAAGACGGCTCAGGGAGAGATGATGAGGTTCTGCGGGATGCGA
TCCAACCTTGTCGTTATCGTCAAGTCCATCAAGTTCCTTGAGCTGGTCTC
GTCCAACATGCTGGCGTTCACAAACCTCGCCATCTGCATCAACCTTGCTC
TCATCATTTACGTGAGAAGA
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