mRNA_F-distichus_contig102581.224.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102581.224.1
Unique NamemRNA_F-distichus_contig102581.224.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig102581.224.1 vs. uniprot
Match: A0A6H5K5F4_9PHAE (AAA_16 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5F4_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 9.890e-25
Identity = 46/55 (83.64%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 PPLLVTGPPCCGKTGVIRAVLDHRGCPYVYVNCAEVVRRRGLLETVVEQVAGGSR 165
            PPLLVTGPPC GKT V+RAVLDHRGC Y YVNCAEVV+RR LLE +VEQVAGGSR
Sbjct:   91 PPLLVTGPPCTGKTSVVRAVLDHRGCSYAYVNCAEVVQRRDLLEALVEQVAGGSR 145
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BLAST of mRNA_F-distichus_contig102581.224.1 vs. uniprot
Match: D7FZ80_ECTSI (Putative Mn/Fe superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ80_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 8.790e-24
Identity = 46/55 (83.64%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 PPLLVTGPPCCGKTGVIRAVLDHRGCPYVYVNCAEVVRRRGLLETVVEQVAGGSR 165
            PPLLVTGPPC GKT V+RAVLDHRGC Y YVNCAEVV+RR LLE +VEQVAGGSR
Sbjct:  135 PPLLVTGPPCTGKTSVVRAVLDHRGCSYAYVNCAEVVQRRDLLEVLVEQVAGGSR 189
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BLAST of mRNA_F-distichus_contig102581.224.1 vs. uniprot
Match: A0A836CAU5_9STRA (Origin recognition complex subunit 5 C-terminus-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAU5_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.520e-9
Identity = 25/54 (46.30%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    4 PLLVTGPPCCGKTGVIRAVLDHRGCPYVYVNCAEVVRRRGLLETVVEQVAGGSR 165
            P++V GPPC GK+G IR VL+   CPY  V+C + +  R L++ VVEQ+    R
Sbjct:  117 PIIVQGPPCTGKSGAIRDVLEESSCPYTLVDCKQALSLRQLMQAVVEQLVSSKR 170
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102581.224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K5F4_9PHAE9.890e-2583.64AAA_16 domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FZ80_ECTSI8.790e-2483.64Putative Mn/Fe superoxide dismutase n=1 Tax=Ectoca... [more]
A0A836CAU5_9STRA1.520e-946.30Origin recognition complex subunit 5 C-terminus-do... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102581contigF-distichus_contig102581:204..371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928942.8547864-CDS-F-distichus_contig102581:203..3711622928942.8547864-CDS-F-distichus_contig102581:203..371Fucus distichus monoicousCDSF-distichus_contig102581 204..371 +
1690885076.008836-CDS-F-distichus_contig102581:203..3711690885076.008836-CDS-F-distichus_contig102581:203..371Fucus distichus monoicousCDSF-distichus_contig102581 204..371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102581.224.1prot_F-distichus_contig102581.224.1Fucus distichus monoicouspolypeptideF-distichus_contig102581 204..371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102581.224.1

>prot_F-distichus_contig102581.224.1 ID=prot_F-distichus_contig102581.224.1|Name=mRNA_F-distichus_contig102581.224.1|organism=Fucus distichus monoicous|type=polypeptide|length=56bp
PPLLVTGPPCCGKTGVIRAVLDHRGCPYVYVNCAEVVRRRGLLETVVEQV
AGGSR*
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mRNA from alignment at F-distichus_contig102581:204..371+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102581.224.1 ID=mRNA_F-distichus_contig102581.224.1|Name=mRNA_F-distichus_contig102581.224.1|organism=Fucus distichus monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at F-distichus_contig102581:204..371+ (Fucus distichus monoicous)
CCCCCCCTGCTGGTGACGGGGCCACCCTGCTGCGGAAAAACGGGGGTGAT
CAGAGCGGTTTTGGACCACCGTGGATGTCCGTACGTGTACGTCAACTGCG
CCGAGGTGGTGCGCAGGAGGGGTTTGCTGGAGACCGTGGTGGAGCAAGTC
GCCGGGGGCTCTAGGTGA
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Coding sequence (CDS) from alignment at F-distichus_contig102581:204..371+

>mRNA_F-distichus_contig102581.224.1 ID=mRNA_F-distichus_contig102581.224.1|Name=mRNA_F-distichus_contig102581.224.1|organism=Fucus distichus monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at F-distichus_contig102581:204..371+ (Fucus distichus monoicous)
CCCCCCCTGCTGGTGACGGGGCCACCCTGCTGCGGAAAAACGGGGGTGAT
CAGAGCGGTTTTGGACCACCGTGGATGTCCGTACGTGTACGTCAACTGCG
CCGAGGTGGTGCGCAGGAGGGGTTTGCTGGAGACCGTGGTGGAGCAAGTC
GCCGGGGGCTCTAGGTGACCCCCCCTGCTGGTGACGGGGCCACCCTGCTG
CGGAAAAACGGGGGTGATCAGAGCGGTTTTGGACCACCGTGGATGTCCGT
ACGTGTACGTCAACTGCGCCGAGGTGGTGCGCAGGAGGGGTTTGCTGGAG
ACCGTGGTGGAGCAAGTCGCCGGGGGCTCTAGGTGA
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