mRNA_F-distichus_contig10254.220.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig10254.220.1 vs. uniprot
Match: D8LTD5_ECTSI (Polyadenylate-binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTD5_ECTSI) HSP 1 Score: 369 bits (946), Expect = 1.210e-121 Identity = 191/214 (89.25%), Postives = 200/214 (93.46%), Query Frame = 1
Query: 4 GFGFVNFEEHESAVKAIDTFNGTEMPDGEGTTTLYCARAQKKSERQRELQSKHEQVKMERMNKFQGVNVYVKNLDEGVTDDTMREAFSPYGTITSARVMVDNTSG-QSKGFGFVCFSAPEEATKAITEMNGKMLLNKPIYVALAQRREVRRTQLEAQFAQRTG-MPPRGLPMA--GQGMYSMPYWMGAQPGMPQQPRQYMVPHMMPRGPRGPMP 633
GFGFVNFEEHESAVKAI+ N EMPDGEGTTTLYCARAQKKSER RELQSKH+QVKMERMNKFQGVNVYVKNLDEGVT+D MREAF+PYGTITSARVMVDN++ QSKGFGFVCFSAPEEATKAITEMNGKMLLNKPIYVALAQRREVRRTQLEAQFAQRTG MPPRG+PMA QGMY MPYWMGAQPGMPQQPRQ+M+P MMPRGPRGPMP
Sbjct: 274 GFGFVNFEEHESAVKAIEALNNAEMPDGEGTTTLYCARAQKKSERARELQSKHDQVKMERMNKFQGVNVYVKNLDEGVTEDAMREAFAPYGTITSARVMVDNSNNNQSKGFGFVCFSAPEEATKAITEMNGKMLLNKPIYVALAQRREVRRTQLEAQFAQRTGGMPPRGMPMAPGAQGMYGMPYWMGAQPGMPQQPRQFMMPQMMPRGPRGPMP 487
BLAST of mRNA_F-distichus_contig10254.220.1 vs. uniprot
Match: A0A835YVH9_9STRA (Polyadenylate-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH9_9STRA) HSP 1 Score: 229 bits (583), Expect = 7.410e-68 Identity = 134/218 (61.47%), Postives = 161/218 (73.85%), Query Frame = 1
Query: 1 RGFGFVNFEEHESAVKAIDTFNG-TEMPDGEGTTTLYCARAQKKSERQRELQSKHEQVKMERMNKFQGVNVYVKNLDEGVTDDTMREAFSPYGTITSARVMVDNTSGQSKGFGFVCFSAPEEATKAITEMNGKMLLNKPIYVALAQRREVRRTQLEAQFAQ-RTGMPPRGLPMAGQ--GMYSM--PYWMGAQPG-MPQQPRQY---MVPHMMPRGPRG 624
RGFGF+NFE+HE+A A+ NG T T L+C RAQK++ERQRELQ+K+E +K+ERMNK+QGVN+YVKNLDE V + +REAF+ GTITS R+M D +G SKGFGFVCFS+PEEATKA+ EMN +M+ +KPIYVALAQR+EVRR QLEAQ+AQ R G+ PRG PM GMY M PY M QPG MPQ PR M+P MM GPRG
Sbjct: 282 RGFGFINFEDHEAAESAVSEMNGKTVSGPAVETRELFCCRAQKRTERQRELQAKYEALKVERMNKYQGVNLYVKNLDEAVDEAALREAFATQGTITSVRIMKDAVTGNSKGFGFVCFSSPEEATKAVQEMNNRMVASKPIYVALAQRKEVRRAQLEAQYAQQRGGLGPRG-PMGAMQPGMYGMGMPYMMPGQPGGMPQPPRAGGYPMMPQMM--GPRG 496
BLAST of mRNA_F-distichus_contig10254.220.1 vs. uniprot
Match: A0A6A3LR95_9STRA (Polyadenylate-binding protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LR95_9STRA) HSP 1 Score: 227 bits (578), Expect = 4.210e-67 Identity = 135/218 (61.93%), Postives = 163/218 (74.77%), Query Frame = 1
Query: 1 RGFGFVNFEEHESAVKAIDTFNGTEMPDGEGTTT-LYCARAQKKSERQRELQSKHEQVKMERMNKFQGVNVYVKNLDEGVTDDTMREAFSPYGTITSARVMVDNTSGQSKGFGFVCFSAPEEATKAITEMNGKMLLNKPIYVALAQRREVRRTQLEAQFAQ-RTGMPP-RGLPMAGQGMYSMPYWMGAQPG-MPQQPRQ-YMVPH-MMPRG-PRGPMP 633
RGFGFVN+E+ ESA KA+D NG P GEG T +Y +AQK+SER+REL++K EQ+KMER+NK+QGVN+YVKNLD+ +TDD +REAF+ GTITS+RVM D +G S+GFGFVCFS PEEA KA+ EMNGK++ KP+YVALAQR+EVRR QLEAQ AQ R GM RG+PM MY QPG MP Q RQ +M P MMPRG RGP+P
Sbjct: 297 RGFGFVNYEDSESAHKAVDALNGKSYPAGEGLETEMYVGKAQKRSERERELRNKFEQLKMERINKYQGVNLYVKNLDDQLTDDELREAFAECGTITSSRVMRD-PNGNSRGFGFVCFSTPEEANKAVAEMNGKLISGKPVYVALAQRKEVRRAQLEAQHAQQRAGMVVGRGMPMGQPPMYGAAPMFYGQPGQMPPQARQGFMYPQQMMPRGVQRGPIP 513
BLAST of mRNA_F-distichus_contig10254.220.1 vs. uniprot
Match: D0RMB6_PHYIT (Polyadenylate-binding protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0RMB6_PHYIT) HSP 1 Score: 224 bits (572), Expect = 6.310e-67 Identity = 133/218 (61.01%), Postives = 163/218 (74.77%), Query Frame = 1
Query: 1 RGFGFVNFEEHESAVKAIDTFNGTEMPDGEGTTT-LYCARAQKKSERQRELQSKHEQVKMERMNKFQGVNVYVKNLDEGVTDDTMREAFSPYGTITSARVMVDNTSGQSKGFGFVCFSAPEEATKAITEMNGKMLLNKPIYVALAQRREVRRTQLEAQFAQ-RTGMPP-RGLPMAGQGMYSMPYWMGAQPG-MPQQPRQ-YMVPH-MMPRG-PRGPMP 633
RGFGFVN+EE ++A KA+D NG P GEG T +Y +AQK+SER+REL++K EQ+KMER+NK+QGVN+YVKNLD+ ++DD +REAF+ GTITS+RVM D +G S+GFGFVCFS PEEA KA+ EMNGK++ KP+YVALAQR+EVRR QLEAQ AQ R GM RG+PM MY QPG +P Q RQ +M P MMPRG RGPMP
Sbjct: 210 RGFGFVNYEESDAAHKAVDALNGKSYPAGEGLDTEMYVGKAQKRSERERELRNKFEQLKMERINKYQGVNLYVKNLDDQLSDDELREAFAECGTITSSRVMRD-PNGNSRGFGFVCFSTPEEANKAVAEMNGKLISGKPVYVALAQRKEVRRAQLEAQHAQQRAGMVVGRGMPMGQPPMYGAAPMFYGQPGQLPPQARQGFMYPQQMMPRGVQRGPMP 426
BLAST of mRNA_F-distichus_contig10254.220.1 vs. uniprot
Match: A0A7S2V0G2_9STRA (Polyadenylate-binding protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0G2_9STRA) HSP 1 Score: 222 bits (565), Expect = 1.840e-65 Identity = 121/208 (58.17%), Postives = 158/208 (75.96%), Query Frame = 1
Query: 4 GFGFVNFEEHESAVKAIDTFNGTEM--PDGEGTTTLYCARAQKKSERQRELQSKHEQVKMERMNKFQGVNVYVKNLDEGVTDDTMREAFSPYGTITSARVMVDNTSGQSKGFGFVCFSAPEEATKAITEMNGKMLLNKPIYVALAQRREVRRTQLEAQFAQRTG-MPPRGLPMAGQGMYSMPYWMGAQPGM---PQQPRQY-MVPHMM 606
G+GFVN+ +HESAVKA++ NG ++ PDGE +Y RAQKK+ER+REL++K E +K ER+NK+QGVN+YVKNLD+ +TD+ +RE F+ YGTITSARVM D+ +G S+GFGFVC+SAPEEATKA++E NGK++ KP+Y+ALAQRREVRR QLEAQ+A+ G +PPRG+P+ GMY PG PQ R Y M+P MM
Sbjct: 246 GYGFVNYADHESAVKAVEAMNGLKLKHPDGE-EREMYAGRAQKKAERERELRAKFESLKAERINKYQGVNLYVKNLDDSITDEGLREEFTAYGTITSARVMRDS-NGNSRGFGFVCYSAPEEATKAVSEANGKLINGKPVYIALAQRREVRRAQLEAQYARSVGGLPPRGIPLGQPGMYGAMPMYAMPPGQGIPPQASRGYPMMPAMM 451
BLAST of mRNA_F-distichus_contig10254.220.1 vs. uniprot
Match: M4B4S0_HYAAE (Polyadenylate-binding protein n=19 Tax=Peronosporaceae TaxID=4777 RepID=M4B4S0_HYAAE) HSP 1 Score: 219 bits (559), Expect = 1.220e-64 Identity = 129/218 (59.17%), Postives = 163/218 (74.77%), Query Frame = 1
Query: 1 RGFGFVNFEEHESAVKAIDTFNGTEMPDGEGTTT-LYCARAQKKSERQRELQSKHEQVKMERMNKFQGVNVYVKNLDEGVTDDTMREAFSPYGTITSARVMVDNTSGQSKGFGFVCFSAPEEATKAITEMNGKMLLNKPIYVALAQRREVRRTQLEAQFAQ-RTGMPP-RGLPMAGQGMYSMPYWMGAQPG-MPQQPRQ-YMVPH-MMPRG-PRGPMP 633
RGFGFVN+++ +SA +A+D NG P G+G T +Y +AQK++ER+REL++K EQ+KMER+NK+QGVN+YVKNLD+ ++DD +REAF GTITS+RVM D +G S+GFGFVCFS PEEA KA+ EMNGK+++ KP+YVALAQR+EVRR QLEAQ AQ R GM RG+PM MY QPG MP Q RQ +M P MMPRG RGP+P
Sbjct: 256 RGFGFVNYDDSDSAHRAVDALNGKAYPVGDGVETDIYVGKAQKRTERERELRNKFEQLKMERINKYQGVNLYVKNLDDQLSDDELREAFVECGTITSSRVMRD-PNGNSRGFGFVCFSTPEEANKAVAEMNGKLIVGKPVYVALAQRKEVRRAQLEAQHAQQRAGMAMGRGMPMGQPPMYGAAPMFYGQPGQMPPQARQGFMYPQQMMPRGVQRGPIP 472
BLAST of mRNA_F-distichus_contig10254.220.1 vs. uniprot
Match: A0A2D4BDJ5_PYTIN (Polyadenylate-binding protein n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BDJ5_PYTIN) HSP 1 Score: 216 bits (549), Expect = 3.260e-63 Identity = 119/201 (59.20%), Postives = 150/201 (74.63%), Query Frame = 1
Query: 1 RGFGFVNFEEHESAVKAIDTFNGT--EMPDGEGTTTLYCARAQKKSERQRELQSKHEQVKMERMNKFQGVNVYVKNLDEGVTDDTMREAFSPYGTITSARVMVDNTSGQSKGFGFVCFSAPEEATKAITEMNGKMLLNKPIYVALAQRREVRRTQLEAQFAQRTGMPPRGLPMAGQGMYSMPYWMGAQPG-MPQQPRQYMV 594
+GFGFVNFE+ E A KA++ NG + PDG LY RAQK+SER+REL++K EQ+KMER++K+QGVN+YVKNLD+ +TD+ +REAF +GTITS+R+M D T+G S+GFGFVCFS PEEA KA+ EMNGK++ KP+YVALAQR+EVRR QLEAQ AQR G+ RG+PM MY AQP +P Q RQ V
Sbjct: 245 KGFGFVNFEKSEGAHKAVEALNGKVYKNPDG-SDVELYVGRAQKRSERERELRNKFEQLKMERLSKYQGVNLYVKNLDDQLTDEELREAFGSFGTITSSRIMRD-TAGVSRGFGFVCFSTPEEANKAVAEMNGKLISGKPVYVALAQRKEVRRAQLEAQHAQRAGLMGRGIPMGQPPMYGAAPMFYAQPNQLPPQARQGFV 443
BLAST of mRNA_F-distichus_contig10254.220.1 vs. uniprot
Match: A0A6G0WN78_9STRA (Polyadenylate-binding protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A6G0WN78_9STRA) HSP 1 Score: 212 bits (539), Expect = 2.000e-61 Identity = 129/220 (58.64%), Postives = 159/220 (72.27%), Query Frame = 1
Query: 1 RGFGFVNFEEHESAVKAIDTFNGTEMPDGEGTTT-LYCARAQKKSERQRELQSKHEQVKMERMNKFQGVNVYVKNLDEGVTDDTMREAFSPYGTITSARVMVDNTSGQSKGFGFVCFSAPEEATKAITEMNGKMLLNKPIYVALAQRREVRRTQLEAQFAQR--TGMPP-RGLPMAGQGMYSMPYWMGAQPG-MPQQPRQYMV--PHMMPRG--PRGPMP 633
RGFGFVNFEE E+A +A + N + +G LY +AQK+SER+REL+ K E +KMER+NK+QGVN+YVKNLD+ +TD+ +REAF+P GTITS R+M D +G S+GFGFVCF+ PEEATKA+TEM+GK++ KPIYVALAQR+EVRR QLEAQ AQ+ TGM RG+PM MY AQP MP Q RQ V MMPRG PRGP+P
Sbjct: 291 RGFGFVNFEEPEAAREACEKLNNKVVSTEDGVEIELYVGKAQKRSERERELRHKFEALKMERINKYQGVNLYVKNLDDQLTDEELREAFAPVGTITSCRIMRD-PAGNSRGFGFVCFATPEEATKAVTEMSGKLISGKPIYVALAQRKEVRRAQLEAQHAQQRATGMVVGRGMPMQQPPMYGAAPMFYAQPNQMPPQARQGFVYPQQMMPRGGLPRGPIP 509
BLAST of mRNA_F-distichus_contig10254.220.1 vs. uniprot
Match: K3X8Z0_GLOUD (Polyadenylate-binding protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3X8Z0_GLOUD) HSP 1 Score: 209 bits (532), Expect = 1.050e-60 Identity = 124/211 (58.77%), Postives = 151/211 (71.56%), Query Frame = 1
Query: 1 RGFGFVNFEEHESAVKAIDTFNGTEMPDGEGTTT-LYCARAQKKSERQRELQSKHEQVKMERMNKFQGVNVYVKNLDEGVTDDTMREAFSPYGTITSARVMVDNTSGQSKGFGFVCFSAPEEATKAITEMNGKMLLNKPIYVALAQRREVRRTQLEAQFA-QRTGMPP-RGLPMAGQGMYSMPYWMGAQPG-MPQQPRQYMV--PHMMPRG 615
RGFGFVNFEE E A KA++ NG +G+ LY +AQK+SER+REL++K EQ+KMER+NK+QGVN+YVKNLD+ + DD +REAF+ GTITS+RVM D +G S+GFGFVCFS PEEA KA+ EMNGK++ KP+YVALAQR+EVRR QLEAQ A QR G+ RGLPM MY QP MP Q RQ V M+PRG
Sbjct: 250 RGFGFVNFEESEGAHKAVEALNGKVYQTADGSDLELYVGKAQKRSERERELRNKFEQLKMERINKYQGVNLYVKNLDDQLNDDELREAFASAGTITSSRVMRDQ-NGNSRGFGFVCFSTPEEANKAVAEMNGKLISGKPVYVALAQRKEVRRAQLEAQHAHQRAGLVVGRGLPMGQPPMYGAAPMFYTQPNQMPPQARQGFVYPQQMLPRG 459
BLAST of mRNA_F-distichus_contig10254.220.1 vs. uniprot
Match: A0A6U3UAG5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3UAG5_9STRA) HSP 1 Score: 204 bits (518), Expect = 1.530e-60 Identity = 117/201 (58.21%), Postives = 147/201 (73.13%), Query Frame = 1
Query: 4 GFGFVNFEEHESAVKAIDTFNGTE---MPDGEGTTT-LYCARAQKKSERQRELQSKHEQVKMERMNKFQGVNVYVKNLDEGVTDDTMREAFSPYGTITSARVMVDNTSGQSKGFGFVCFSAPEEATKAITEMNGKMLLNKPIYVALAQRREVRRTQLEAQFAQRTGMPPRGLP-----MAGQGMYSMPYWMGAQPGMPQQP 579
GFGFV+F EH++AV A++ NG E M +GE + LY RAQKK+ER+REL++K+E KM+R++KFQGVN+YVKNLD+ VTDD +R+ FS GTITSARVM D GQS+GFGFVC++ PEEAT+A+ EMNGK+L NKPI+VALAQRREVRR QLEAQ R G P +G P M G M + + GA P Q+P
Sbjct: 2 GFGFVSFMEHDAAVDAVEALNGMEFKTMMNGEEVSQELYVGRAQKKAERERELRAKYEAEKMDRISKFQGVNLYVKNLDDTVTDDILRDEFSQMGTITSARVMKDLKDGQSRGFGFVCYATPEEATRAVNEMNGKLLANKPIFVALAQRREVRRAQLEAQHNSR-GQPQQGQPGQPGMMRGGPMGAXXXYPGAMPMYMQRP 201 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10254.220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig10254.220.1 >prot_F-distichus_contig10254.220.1 ID=prot_F-distichus_contig10254.220.1|Name=mRNA_F-distichus_contig10254.220.1|organism=Fucus distichus monoicous|type=polypeptide|length=211bp RGFGFVNFEEHESAVKAIDTFNGTEMPDGEGTTTLYCARAQKKSERQRELback to top mRNA from alignment at F-distichus_contig10254:1339..2730+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig10254.220.1 ID=mRNA_F-distichus_contig10254.220.1|Name=mRNA_F-distichus_contig10254.220.1|organism=Fucus distichus monoicous|type=mRNA|length=1392bp|location=Sequence derived from alignment at F-distichus_contig10254:1339..2730+ (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig10254:1339..2730+ >mRNA_F-distichus_contig10254.220.1 ID=mRNA_F-distichus_contig10254.220.1|Name=mRNA_F-distichus_contig10254.220.1|organism=Fucus distichus monoicous|type=CDS|length=1266bp|location=Sequence derived from alignment at F-distichus_contig10254:1339..2730+ (Fucus distichus monoicous)back to top |