mRNA_F-distichus_contig102273.195.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102273.195.1
Unique NamemRNA_F-distichus_contig102273.195.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig102273.195.1 vs. uniprot
Match: A0A6H5JQ60_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQ60_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 6.650e-33
Identity = 65/146 (44.52%), Postives = 92/146 (63.01%), Query Frame = 1 
Query:    1 SQGFDAACAAIFLSLKENIAATQAVYAKWAVPVTWVLWHRPGVGNSIAHKAVAYAWSIVTDNEPAVLRWFSRDPILGNCKTEDNMVDMLFVTVFSSEQPLATFCSKLGLQKAVFRRLVEHTMGAREDGPAVTIYVVLCLLCLAEKQ 438
            +QGFDA+C AIF+ +  N+    AV+ KWAVP+ W++ +    G    + A+ Y WS++  +   V  W  RDPI+G C  ++ M D +   +F   +PL+TFCS+LGL + V   +VE TM A   GPAVTI+VV+ LLCLAEKQ
Sbjct:  244 NQGFDASCKAIFICVGGNLGVAAAVFTKWAVPLAWMMMNPYRHGQLGINTAMRYTWSVIKMHAAPVSGWLCRDPIVG-CDEDNEMADTILAHIFM--EPLSTFCSRLGLPQCVINDIVEETMRAGVHGPAVTIFVVMSLLCLAEKQ 386
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BLAST of mRNA_F-distichus_contig102273.195.1 vs. uniprot
Match: A0A6H5K5C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C0_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 2.730e-32
Identity = 65/146 (44.52%), Postives = 92/146 (63.01%), Query Frame = 1 
Query:    1 SQGFDAACAAIFLSLKENIAATQAVYAKWAVPVTWVLWHRPGVGNSIAHKAVAYAWSIVTDNEPAVLRWFSRDPILGNCKTEDNMVDMLFVTVFSSEQPLATFCSKLGLQKAVFRRLVEHTMGAREDGPAVTIYVVLCLLCLAEKQ 438
            +QGFDA+C AIF+ +  N+    AV+ KWAVP+ W++ +    G    + A+ Y WS++  +   V  W  RDPI+G C  ++ M D +   +F   +PL+TFCS+LGL + V   +VE TM A   GPAVTI+VV+ LLCLAEKQ
Sbjct:  249 NQGFDASCKAIFICVGGNLGVAAAVFTKWAVPLAWMMMNPYRHGQLGINTAMRYTWSVIKMHAAPVSGWLCRDPIVG-CDEDNEMADTILAHIFM--EPLSTFCSRLGLPQCVINDIVEETMRAGVHGPAVTIFVVMSLLCLAEKQ 391
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102273.195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQ60_9PHAE6.650e-3344.52Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K5C0_9PHAE2.730e-3244.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102273contigF-distichus_contig102273:984..1916 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size438
Cds size438
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102273.195.1prot_F-distichus_contig102273.195.1Fucus distichus monoicouspolypeptideF-distichus_contig102273 984..1916 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928938.8384397-CDS-F-distichus_contig102273:983..11281622928938.8384397-CDS-F-distichus_contig102273:983..1128Fucus distichus monoicousCDSF-distichus_contig102273 984..1128 -
1690885074.8492682-CDS-F-distichus_contig102273:983..11281690885074.8492682-CDS-F-distichus_contig102273:983..1128Fucus distichus monoicousCDSF-distichus_contig102273 984..1128 -
1622928938.8560874-CDS-F-distichus_contig102273:1315..14581622928938.8560874-CDS-F-distichus_contig102273:1315..1458Fucus distichus monoicousCDSF-distichus_contig102273 1316..1458 -
1690885074.8597143-CDS-F-distichus_contig102273:1315..14581690885074.8597143-CDS-F-distichus_contig102273:1315..1458Fucus distichus monoicousCDSF-distichus_contig102273 1316..1458 -
1622928938.867451-CDS-F-distichus_contig102273:1766..19161622928938.867451-CDS-F-distichus_contig102273:1766..1916Fucus distichus monoicousCDSF-distichus_contig102273 1767..1916 -
1690885074.8707106-CDS-F-distichus_contig102273:1766..19161690885074.8707106-CDS-F-distichus_contig102273:1766..1916Fucus distichus monoicousCDSF-distichus_contig102273 1767..1916 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102273.195.1

>prot_F-distichus_contig102273.195.1 ID=prot_F-distichus_contig102273.195.1|Name=mRNA_F-distichus_contig102273.195.1|organism=Fucus distichus monoicous|type=polypeptide|length=146bp
SQGFDAACAAIFLSLKENIAATQAVYAKWAVPVTWVLWHRPGVGNSIAHK
AVAYAWSIVTDNEPAVLRWFSRDPILGNCKTEDNMVDMLFVTVFSSEQPL
ATFCSKLGLQKAVFRRLVEHTMGAREDGPAVTIYVVLCLLCLAEKQ
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mRNA from alignment at F-distichus_contig102273:984..1916-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102273.195.1 ID=mRNA_F-distichus_contig102273.195.1|Name=mRNA_F-distichus_contig102273.195.1|organism=Fucus distichus monoicous|type=mRNA|length=933bp|location=Sequence derived from alignment at F-distichus_contig102273:984..1916- (Fucus distichus monoicous)
TCCCAGGGGTTCGATGCAGCTTGTGCAGCGATATTTCTTTCTCTAAAGGA
AAATATCGCCGCGACTCAAGCTGTGTATGCCAAGTGGGCGGTGCCCGTAA
CGTGGGTCCTCTGGCACCGGCCTGGAGTTGGCAATAGTATCGCGCATAAG
GTGAGCAATATACACCACACCTACCCACTCCATCGATAATAAGCCATCAT
GTCACCAATTCTAGACATCTAGCCACGGACTTTCGCTACAGGGGCGAGAT
ACTCCACGTGGGCACACGACGGACAGTCGACTACTGCCGAAACATAGAGA
GTTCATATAAGAGCAGATTTGTGTTCCCCTGACTGTTCGTGAAGTGCATC
TCGTCACTTGTCCCCCACATCATTCTGCAACCACACCTGACCTCTCTGGC
TACGACGCCCTCGGTCCTTACTCCACCCGAATGTCCACCGAATATTGCTC
TCTATCAGGCAGTGGCTTATGCGTGGTCAATCGTTACAGACAACGAGCCT
GCTGTGCTACGGTGGTTTTCGAGGGACCCCATCCTCGGAAATTGCAAAAC
TGAGGACAACATGGTGGACATGTTATTCGTCACAGTATTTTCGAGTGAGC
AGTCGCGAGCCCAGCCCCGGCGCTTCCGTTCCCTCGTCCTCCATATTACG
TTGCTGCGAACGCGCACACCCACTTGCACCCACAATGCGATATTGCCACC
CAGAGCTCTCCTCCCACGTCGTGCGCTATCGCGACTACGTCAATGATTTC
TCTTTCCCTGATTGCTCTCCTTTCGATTTGTCGTTCAGGCCTTTAGCCAC
TTTCTGCAGCAAGCTCGGACTGCAGAAGGCGGTTTTCCGTCGGCTCGTGG
AACATACCATGGGGGCGAGGGAAGACGGACCCGCCGTGACAATCTACGTC
GTTCTCTGCCTCCTTTGCTTGGCCGAGAAGCAG
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Coding sequence (CDS) from alignment at F-distichus_contig102273:984..1916-

>mRNA_F-distichus_contig102273.195.1 ID=mRNA_F-distichus_contig102273.195.1|Name=mRNA_F-distichus_contig102273.195.1|organism=Fucus distichus monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at F-distichus_contig102273:984..1916- (Fucus distichus monoicous)
TCCCAGGGGTTCGATGCAGCTTGTGCAGCGATATTTCTTTCTCTAAAGGA
AAATATCGCCGCGACTCAAGCTGTGTATGCCAAGTGGGCGGTGCCCGTAA
CGTGGGTCCTCTGGCACCGGCCTGGAGTTGGCAATAGTATCGCGCATAAG
TCCCAGGGGTTCGATGCAGCTTGTGCAGCGATATTTCTTTCTCTAAAGGA
AAATATCGCCGCGACTCAAGCTGTGTATGCCAAGTGGGCGGTGCCCGTAA
CGTGGGTCCTCTGGCACCGGCCTGGAGTTGGCAATAGTATCGCGCATAAG
GCAGTGGCTTATGCGTGGTCAATCGTTACAGACAACGAGCCTGCTGTGCT
ACGGTGGTTTTCGAGGGACCCCATCCTCGGAAATTGCAAAACTGAGGACA
ACATGGTGGACATGTTATTCGTCACAGTATTTTCGAGTGAGCAGCAGTGG
CTTATGCGTGGTCAATCGTTACAGACAACGAGCCTGCTGTGCTACGGTGG
TTTTCGAGGGACCCCATCCTCGGAAATTGCAAAACTGAGGACAACATGGT
GGACATGTTATTCGTCACAGTATTTTCGAGTGAGCAGCCTTTAGCCACTT
TCTGCAGCAAGCTCGGACTGCAGAAGGCGGTTTTCCGTCGGCTCGTGGAA
CATACCATGGGGGCGAGGGAAGACGGACCCGCCGTGACAATCTACGTCGT
TCTCTGCCTCCTTTGCTTGGCCGAGAAGCAGGCCTTTAGCCACTTTCTGC
AGCAAGCTCGGACTGCAGAAGGCGGTTTTCCGTCGGCTCGTGGAACATAC
CATGGGGGCGAGGGAAGACGGACCCGCCGTGACAATCTACGTCGTTCTCT
GCCTCCTTTGCTTGGCCGAGAAGCAG
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