mRNA_F-distichus_contig10225.194.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig10225.194.1 vs. uniprot
Match: D8LBX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBX5_ECTSI) HSP 1 Score: 243 bits (621), Expect = 3.170e-62 Identity = 214/596 (35.91%), Postives = 275/596 (46.14%), Query Frame = 1
Query: 313 GNEPGANDKAPLLSIQIGGVNGDLPDVQWSVQIQ--KVLKAEDSGRINVKVKGVSLSVSLDPGAGASSLLPLQRPPSAXXXXXXXXXXTPQSSPFYREDDTDSLSRASSSPISVTPAGLVRETSGLFDDDSSGGSAGRGVGQPQECDARDVGLSAVVEGARGGLGDTGAEVNDVTFRH-------------------SQKVARLILICFASGTLSSALTKGTDKLRRRLKGPKGATTFSPQVTPLCSPVHHDRSDGFTTPTR-----------------------PTPSQ----SPLYPEAASKAVKPPSEFVPVRD----SFIGVRKNDGGSRE-------------AGGERSRASPGVSDSSEDDKLACS-IGYGSA-GLLKVTECRCSVGTIDIQIDGSKFDGIYNLVAKGLGDTIRDAVXXXXEKAFTQGVERLVARINDRAAQLWCGIAPEPKQKPAKVVCSAIRAQGIGKGRIEPFVKLRLFDKDGSQVAKRSTAALTSIAGAADAS------------------------DRGGSSRNPCWIGLDNDLTLDLPEEGAQGYSLFFEVRQSGTLASNLIGSTRRSTLREIE 1827
G E A P LSI +G V+ LPDV WSVQ+Q + L+ DSG INV ++GVSLS+SLDPGAG SL R PS XXXXXXXX S P LF ++ + R V + D G +V E G S K ++L ++S+AL+KGT K++RRLK P+ S+ +P P AA+ A P R S +G DGGS A R R S D+ E +L S I GSA G LKVT C C VG+I I++DGSK DGIYN +AKGLGDTIRDAV EKAF + + +LV INDR A++W G AP K+KPA++VC+A+RAQG+ KG+ + +VK+RL KDG+Q+ KRSTAA+ ++A +A S +RNPCW+GLDNDL+++LPEE SL FEV SGTLA+ L+GSTRR T+ EIE
Sbjct: 625 GGEREAXXXXPYLSITVGNVSCFLPDVNWSVQMQQKRFLRVGDSGYINVWLEGVSLSLSLDPGAGVDSLFGSSRRPSQTPXXXXXXXXXXXXXXXXXXXXXXXXXGTSGGDNQGAPPRP------LFPFVATSSQSPRSVSAEPSAEGIDGG--SVAERGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSKWSKL-------NSMSTALSKGTGKIKRRLKATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPSTSRERAVTPPLPSAATTAATTPEALPSSRSVPHLSILGDNDADGGSGSLVFATAAEFSPLAAAAARRRGSGLEGDAREAGELPPSGISGGSADGFLKVTACSCKVGSIRIEVDGSKHDGIYNFLAKGLGDTIRDAVREAVEKAFAEEIGKLVEGINDRIAEIWSGSAPVSKKKPARLVCAAVRAQGLPKGKTDLYVKVRLIKKDGTQLEKRSTAAVGAVATSAAMSIPXXXXXXXXXXXXXXXXXXXXXXXXXAPARNPCWVGLDNDLSMNLPEEDPGRLSLVFEVWHSGTLANALVGSTRRVTMSEIE 1205
BLAST of mRNA_F-distichus_contig10225.194.1 vs. uniprot
Match: A0A6H5JK16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK16_9PHAE) HSP 1 Score: 239 bits (611), Expect = 5.780e-61 Identity = 209/589 (35.48%), Postives = 274/589 (46.52%), Query Frame = 1
Query: 349 LSIQIGGVNGDLPDVQWSVQIQ--KVLKAEDSGRINVKVKGVSLSVSLDPGAGASSLLPLQRPPSAXXXXXXXXXXTPQSSPFYREDDTDSLSRASSSPISVTPAGLVRETSGLFDDDSSGGSAGRGVGQPQECDARDVGLSAVVEGARGGLGDTGAEVNDVTFRHSQKVARLILICFASG--------------TLSSALTKGTDKLRRRLKGPK---------------------------GATTFSPQVTPLCSPV---HHDRSDGFTTPTRPTPSQ----SPLYPEAASKAVKPP-----SEFVPVRDSFIGVRKNDGGSRE--------------AGGERSRASPGVSDSSEDDKLACSIGYGSAG---LLKVTECRCSVGTIDIQIDGSKFDGIYNLVAKGLGDTIRDAVXXXXEKAFTQGVERLVARINDRAAQLWCGIAPEPKQKPAKVVCSAIRAQGIGKGRIEPFVKLRLFDKDGSQVAKRSTAALTSIAGAADAS------------------------DRGGSSRNPCWIGLDNDLTLDLPEEGAQGYSLFFEVRQSGTLASNLIGSTRRSTLREIE 1827
LSI +G V+ LP V WSVQ Q + L+ DSG INV+++GVSLS+SLDPGAG SL R PS XXXXXX P+ P S + P L ++ A R V + D G A RGG ++S+AL+KGT K++RR K T+F P + P D+SD F++ + P+ S+ +P P AA+ A P S VP R S +G DGGS A R R S D E ++ S G + G LKVT C C VG+I I +DGSK DGIYN +AKGLGDTIRDAV EKAF + + +LV INDR A++W G P K+ +VVC+A+RAQ + KG+ + +VK+RL +DG+Q+ KRSTAA+ ++A +A S +RNPCW+GLDNDL+++LPEE G SL FEV SGTLA+ L+GSTRR T+ EIE
Sbjct: 615 LSITLGNVSCFLPKVNWSVQTQQKRFLRVGDSGYINVRLEGVSLSLSLDPGAGVCSLFGSSRRPSQTPXXXXXXPVAPRHLPGTSAAAPVGTSGGDNXXXXXRP---------LLPFVATSSQAPRSVSAEPSAEGTDGGSVA----ERGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSKWSTLKSMSTALSKGTGKIKRRWKATXXXXXXXXXXXXXXXXXXXLQRTGHHQPAPTSFQPASSFFHPPSPIDSSDKSDAFSSSSVPSTSRGRAITPTLPSAATTAAPTPEALPSSRSVP-RLSSLGDNDADGGSGSLVFATAAEFSPLAAAAAARRRGSGLEGDDGEAGEVTPS-GISAGGTDEFLKVTACSCKVGSIRIDVDGSKHDGIYNFLAKGLGDTIRDAVREAVEKAFAEEIGKLVEGINDRIAEIWSGSPPVSKK--FRVVCAAVRAQDLPKGKTDLYVKVRLIKQDGTQLEKRSTAAVGAVATSAAMSIPXXXXXXXXXXXXXXXXXXXXXXXXXAPARNPCWVGLDNDLSMNLPEEDPDGMSLVFEVWHSGTLANALVGSTRRVTMSEIE 1186 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10225.194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig10225.194.1 >prot_F-distichus_contig10225.194.1 ID=prot_F-distichus_contig10225.194.1|Name=mRNA_F-distichus_contig10225.194.1|organism=Fucus distichus monoicous|type=polypeptide|length=681bp DGSIPRSQTPSGTNVVGEHFPKEAANSTPKVINSGRDAWKKIAAVAAQGVback to top mRNA from alignment at F-distichus_contig10225:4051..10626- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig10225.194.1 ID=mRNA_F-distichus_contig10225.194.1|Name=mRNA_F-distichus_contig10225.194.1|organism=Fucus distichus monoicous|type=mRNA|length=6576bp|location=Sequence derived from alignment at F-distichus_contig10225:4051..10626- (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig10225:4051..10626- >mRNA_F-distichus_contig10225.194.1 ID=mRNA_F-distichus_contig10225.194.1|Name=mRNA_F-distichus_contig10225.194.1|organism=Fucus distichus monoicous|type=CDS|length=4086bp|location=Sequence derived from alignment at F-distichus_contig10225:4051..10626- (Fucus distichus monoicous)back to top |