mRNA_F-distichus_contig102143.181.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102143.181.1
Unique NamemRNA_F-distichus_contig102143.181.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig102143.181.1 vs. uniprot
Match: A0A6H5JZW2_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZW2_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 5.510e-43
Identity = 72/106 (67.92%), Postives = 84/106 (79.25%), Query Frame = 1 
Query:    1 GKTEIDQLNKIFGVLGSPTEKRWPGWSKLPLASKMDWRHGKDSRLRMTFPTTGFSGQASISDQGLDLMDGLLTLDPSKRTSAKDALDHRWFASEKPLPTPVGEMPQ 318
            GKTEIDQL  IFGVLGSPTE RWPGW+KLP A  + WR G  ++LR TFPT GFSG+ SIS QGL+LM+GLL LDP +R SA DAL H WF +E+P PTP+G+MPQ
Sbjct:  785 GKTEIDQLKLIFGVLGSPTEDRWPGWTKLPGAKSVGWRQGTGNQLRATFPTNGFSGKPSISTQGLELMNGLLALDPQQRMSAHDALQHCWFTTERPAPTPLGDMPQ 890
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BLAST of mRNA_F-distichus_contig102143.181.1 vs. uniprot
Match: A0A835ZAM4_9STRA (Mammalian PITSLRE alpha protein kinase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAM4_9STRA)

HSP 1 Score: 122 bits (305), Expect = 8.030e-32
Identity = 60/105 (57.14%), Postives = 73/105 (69.52%), Query Frame = 1 
Query:    1 GKTEIDQLNKIFGVLGSPTEKRWPGWSKLPLASKMDWRHGKDSRLRMTFPTTGFSGQASISDQGLDLMDGLLTLDPSKRTSAKDALDHRWFASEKPLPTPVGEMP 315
            G+ EI+QL KIF +LG+PTE+RWPGWS+L  A  + WR G  SRL   FP+T FSG+  +S  GLDL+ GLLTLDP++R SA  AL H WF  E PLP    EMP
Sbjct:  175 GQGEIEQLGKIFSLLGAPTEERWPGWSELSGAKTLKWRGGATSRLAEMFPSTSFSGKPVLSKLGLDLLTGLLTLDPTRRLSAAGALAHAWF-DEFPLPKRQDEMP 278
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BLAST of mRNA_F-distichus_contig102143.181.1 vs. uniprot
Match: A0A6T7YY04_9CHLO (Cyclin-dependent kinase n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A6T7YY04_9CHLO)

HSP 1 Score: 108 bits (270), Expect = 6.380e-26
Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = 1 
Query:    1 GKTEIDQLNKIFGVLGSPTEKRWPGWSKLPLASKMDWRHGKDSRLRMTFPTTGFSGQASISDQGLDLMDGLLTLDPSKRTSAKDALDHRWFASEKPLPTPVGEMP 315
            G+TE++QL+K+F +LG+P EK WPG+SKLP  SK+ +   K + LR  FP    SG  ++SD G DL++ LLT DP  R SA+DALDH WF  E PLP     MP
Sbjct:  228 GRTELEQLDKMFKLLGTPNEKIWPGFSKLPAVSKVAFPQQKFNNLRNKFPAMSVSGGPTLSDLGFDLLNKLLTYDPEARISAQDALDHPWF-EEHPLPKAKELMP 331
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BLAST of mRNA_F-distichus_contig102143.181.1 vs. uniprot
Match: UPI00053F6532 (cyclin-dependent kinase G-2 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F6532)

HSP 1 Score: 109 bits (273), Expect = 7.710e-26
Identity = 52/105 (49.52%), Postives = 72/105 (68.57%), Query Frame = 1 
Query:    1 GKTEIDQLNKIFGVLGSPTEKRWPGWSKLPLASKMDWRHGKDSRLRMTFPTTGFSGQASISDQGLDLMDGLLTLDPSKRTSAKDALDHRWFASEKPLPTPVGEMP 315
            GKTE++QL+KIF +LG+P +K WPG+S+LPLA K+++ H   + L   FP   F+G  ++SD GLDL+  LL  DP KR + ++AL+HRWF  E PLP     MP
Sbjct:  434 GKTEVEQLSKIFRLLGTPNDKIWPGYSQLPLAKKVNFPHQPYNLLHNKFPRASFTGSPTLSDLGLDLLSRLLHYDPEKRITVEEALNHRWF-QEVPLPNSKEFMP 537
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BLAST of mRNA_F-distichus_contig102143.181.1 vs. uniprot
Match: A0A7I8J159_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8J159_SPIIN)

HSP 1 Score: 107 bits (267), Expect = 8.800e-26
Identity = 54/105 (51.43%), Postives = 72/105 (68.57%), Query Frame = 1 
Query:    1 GKTEIDQLNKIFGVLGSPTEKRWPGWSKLPLASKMDWRHGKDSRLRMTFPTTGFSGQASISDQGLDLMDGLLTLDPSKRTSAKDALDHRWFASEKPLPTPVGEMP 315
            GKTE DQL+KIF +LG+P EK WPG+ KLP   K+++     ++LR  FP T FSG+ ++S+ G DL++ LLT DP KR +A+DAL+H WF  E PLP     MP
Sbjct:  198 GKTEFDQLDKIFRILGTPNEKIWPGFPKLP-GVKVNFVKQPYNKLREKFPPTSFSGRPTLSEAGFDLLNKLLTYDPEKRIAAEDALNHEWFR-EVPLPKSKSFMP 300
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BLAST of mRNA_F-distichus_contig102143.181.1 vs. uniprot
Match: B9RAJ9_RICCO (Cyclin-dependent kinase n=3 Tax=Ricinus communis TaxID=3988 RepID=B9RAJ9_RICCO)

HSP 1 Score: 109 bits (273), Expect = 9.780e-26
Identity = 58/105 (55.24%), Postives = 73/105 (69.52%), Query Frame = 1 
Query:    1 GKTEIDQLNKIFGVLGSPTEKRWPGWSKLPLASKMDWRHGKDSRLRMTFPTTGFSGQASISDQGLDLMDGLLTLDPSKRTSAKDALDHRWFASEKPLPTPVGEMP 315
            GK+EIDQL KIFGVLG+P+EK WPG+S LP  +K ++     + LR  FP T F+G   +SD GLDL++ LLT DP KR +A+DAL+H WF  E PLPT    MP
Sbjct:  532 GKSEIDQLAKIFGVLGTPSEKIWPGFSNLP-GAKANFVKQPYNLLRKKFPATFFTGSPVLSDLGLDLLNKLLTYDPEKRLTAEDALNHAWFR-EVPLPTSKEFMP 634
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BLAST of mRNA_F-distichus_contig102143.181.1 vs. uniprot
Match: A0A485LQL1_9STRA (Aste57867_24097 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LQL1_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.660e-25
Identity = 55/106 (51.89%), Postives = 70/106 (66.04%), Query Frame = 1 
Query:    1 GKTEIDQLNKIFGVLGSPTEKRWPGWSKLPLASKMDWRHGKDSRLRMTFPTTGFSG-QASISDQGLDLMDGLLTLDPSKRTSAKDALDHRWFASEKPLPTPVGEMP 315
            G+ EIDQL++IF +LG PTE+ WPG S LP  + + W+  K S LR  FP    +G Q+ +S+ G DLM  LLTLDPS+R SA DAL+H +F  E P P PV  MP
Sbjct:  279 GRGEIDQLDQIFKLLGPPTEQNWPGVSDLPNVANVKWKGAKRSMLREKFPVASLTGGQSVLSNAGFDLMQKLLTLDPSQRISAADALEHEYFR-EAPAPKPVNLMP 383
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BLAST of mRNA_F-distichus_contig102143.181.1 vs. uniprot
Match: A0A392N7Q3_9FABA (Cyclin-dependent kinase G-2-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392N7Q3_9FABA)

HSP 1 Score: 102 bits (254), Expect = 1.870e-25
Identity = 53/105 (50.48%), Postives = 69/105 (65.71%), Query Frame = 1 
Query:    1 GKTEIDQLNKIFGVLGSPTEKRWPGWSKLPLASKMDWRHGKDSRLRMTFPTTGFSGQASISDQGLDLMDGLLTLDPSKRTSAKDALDHRWFASEKPLPTPVGEMP 315
            GKTE DQL+KIF +LG+P E  WPG+SKLP   K+++   + + LR  FP T F+G   +SD G DL++ LLT DP KR +A+ AL+H WF  E PLP     MP
Sbjct:   36 GKTEFDQLDKIFRILGTPNETIWPGFSKLP-GVKVNFVKHQYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITAEAALNHEWFR-EVPLPKSKEFMP 138
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BLAST of mRNA_F-distichus_contig102143.181.1 vs. uniprot
Match: A0A1D1YIG7_9ARAE (Cyclin-dependent kinase n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YIG7_9ARAE)

HSP 1 Score: 108 bits (271), Expect = 1.910e-25
Identity = 55/105 (52.38%), Postives = 73/105 (69.52%), Query Frame = 1 
Query:    1 GKTEIDQLNKIFGVLGSPTEKRWPGWSKLPLASKMDWRHGKDSRLRMTFPTTGFSGQASISDQGLDLMDGLLTLDPSKRTSAKDALDHRWFASEKPLPTPVGEMP 315
            GKTE DQL+KIF +LG+P EK WPG++KLP   K+++     +RLR  FP T FSG+ ++S+ G DL++ LLT DP KR +A+DAL+H WF  E PLP     MP
Sbjct:  578 GKTEFDQLDKIFRILGTPNEKIWPGFAKLP-GVKVNFVRQPYNRLREKFPPTSFSGRPTLSEAGFDLLNKLLTYDPDKRITAEDALNHEWFR-EVPLPKSKEFMP 680
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BLAST of mRNA_F-distichus_contig102143.181.1 vs. uniprot
Match: A0A7C9EHJ4_OPUST (Cyclin-dependent kinase (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9EHJ4_OPUST)

HSP 1 Score: 102 bits (253), Expect = 3.350e-25
Identity = 52/98 (53.06%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:    1 GKTEIDQLNKIFGVLGSPTEKRWPGWSKLPLASKMDWRHGKDSRLRMTFPTTGFSGQASISDQGLDLMDGLLTLDPSKRTSAKDALDHRWFASEKPLP 294
            GKTE++QLNKIF  LG+P+EK WPG S+ P A K +  H   + L   FP T F+G  S+S+ GLDL+  LLT DP+KR +A +AL+H+WF  E PLP
Sbjct:   77 GKTELEQLNKIFKTLGTPSEKIWPGCSQFP-AVKANSVHQPYNLLHKRFPRTSFTGSPSLSELGLDLLSKLLTYDPAKRITADEALNHQWFR-EVPLP 172
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102143.181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZW2_9PHAE5.510e-4367.92Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A835ZAM4_9STRA8.030e-3257.14Mammalian PITSLRE alpha protein kinase-like protei... [more]
A0A6T7YY04_9CHLO6.380e-2651.43Cyclin-dependent kinase n=1 Tax=Pyramimonas obovat... [more]
UPI00053F65327.710e-2649.52cyclin-dependent kinase G-2 n=1 Tax=Beta vulgaris ... [more]
A0A7I8J159_SPIIN8.800e-2651.43Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]
B9RAJ9_RICCO9.780e-2655.24Cyclin-dependent kinase n=3 Tax=Ricinus communis T... [more]
A0A485LQL1_9STRA1.660e-2551.89Aste57867_24097 protein n=1 Tax=Aphanomyces stella... [more]
A0A392N7Q3_9FABA1.870e-2550.48Cyclin-dependent kinase G-2-like (Fragment) n=1 Ta... [more]
A0A1D1YIG7_9ARAE1.910e-2552.38Cyclin-dependent kinase n=1 Tax=Anthurium amnicola... [more]
A0A7C9EHJ4_OPUST3.350e-2553.06Cyclin-dependent kinase (Fragment) n=1 Tax=Opuntia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102143contigF-distichus_contig102143:1160..2013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.7
Seed ortholog evalue1.5e-36
Seed eggNOG ortholog2880.D8LCL8
KEGG koko:K02449,ko:K08818
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000082,GO:0000086,GO:0000166,GO:0000226,GO:0000278,GO:0000302,GO:0000307,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004693,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006325,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006977,GO:0006979,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007093,GO:0007098,GO:0007099,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0007275,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0008284,GO:0009058,GO:0009059,GO:0009966,GO:0009987,GO:0010033,GO:0010035,GO:0010389,GO:0010468,GO:0010564,GO:0010646,GO:0010948,GO:0012505,GO:0015030,GO:0015630,GO:0016043,GO:0016301,GO:0016310,GO:0016569,GO:0016570,GO:0016572,GO:0016604,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018193,GO:0018209,GO:0019222,GO:0019538,GO:0019904,GO:0022402,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0030330,GO:0030332,GO:0030554,GO:0031023,GO:0031410,GO:0031570,GO:0031571,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034599,GO:0034614,GO:0034641,GO:0034645,GO:0035556,GO:0035639,GO:0035690,GO:0036094,GO:0036211,GO:0042127,GO:0042221,GO:0042493,GO:0042770,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044770,GO:0044772,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0044839,GO:0044843,GO:0045786,GO:0045787,GO:0045930,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051276,GO:0051298,GO:0051321,GO:0051716,GO:0051726,GO:0060255,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070887,GO:0070925,GO:0071156,GO:0071158,GO:0071241,GO:0071704,GO:0071731,GO:0071732,GO:0071840,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0090068,GO:0090304,GO:0097124,GO:0097159,GO:0097366,GO:0097367,GO:0097472,GO:0097708,GO:0098534,GO:0140096,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901576,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901796,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902170,GO:1902400,GO:1902402,GO:1902403,GO:1902494,GO:1902531,GO:1902554,GO:1902749,GO:1902806,GO:1902807,GO:1902911,GO:1903047,GO:1990234,GO:2000045,GO:2000134
EggNOG free text desc.cyclin-dependent protein serine/threonine kinase activity
EggNOG OGsKOG0663@1,KOG0663@2759
EC2.7.11.22
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko03041
Exons2
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.9482772-CDS-F-distichus_contig102143:1159..13131622928935.9482772-CDS-F-distichus_contig102143:1159..1313Fucus distichus monoicousCDSF-distichus_contig102143 1160..1313 -
1690885074.0752313-CDS-F-distichus_contig102143:1159..13131690885074.0752313-CDS-F-distichus_contig102143:1159..1313Fucus distichus monoicousCDSF-distichus_contig102143 1160..1313 -
1622928935.9648008-CDS-F-distichus_contig102143:1849..20131622928935.9648008-CDS-F-distichus_contig102143:1849..2013Fucus distichus monoicousCDSF-distichus_contig102143 1850..2013 -
1690885074.0928233-CDS-F-distichus_contig102143:1849..20131690885074.0928233-CDS-F-distichus_contig102143:1849..2013Fucus distichus monoicousCDSF-distichus_contig102143 1850..2013 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102143.181.1prot_F-distichus_contig102143.181.1Fucus distichus monoicouspolypeptideF-distichus_contig102143 1160..2013 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102143.181.1

>prot_F-distichus_contig102143.181.1 ID=prot_F-distichus_contig102143.181.1|Name=mRNA_F-distichus_contig102143.181.1|organism=Fucus distichus monoicous|type=polypeptide|length=106bp
GKTEIDQLNKIFGVLGSPTEKRWPGWSKLPLASKMDWRHGKDSRLRMTFP
TTGFSGQASISDQGLDLMDGLLTLDPSKRTSAKDALDHRWFASEKPLPTP
VGEMPQ
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mRNA from alignment at F-distichus_contig102143:1160..2013-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102143.181.1 ID=mRNA_F-distichus_contig102143.181.1|Name=mRNA_F-distichus_contig102143.181.1|organism=Fucus distichus monoicous|type=mRNA|length=854bp|location=Sequence derived from alignment at F-distichus_contig102143:1160..2013- (Fucus distichus monoicous)
GGCAAGACAGAGATCGATCAGCTCAACAAGATCTTTGGCGTCTTGGGGTC
TCCGACGGAGAAGCGATGGCCCGGATGGTCCAAGCTGCCGCTGGCGTCGA
AGATGGACTGGCGACACGGGAAAGACAGTCGGTTGCGGATGACATTTCCC
ACTACGGGGTTCAGGTACAAATCCTTTTTTTTTTGTCGGAGGAAAGAAGA
TTTTCGTGCGAAATTGATATTTTAGTGGTACCAATACGCTGCAAGAAGCT
TGTTCCGCTCAAGGACCACTCAAAACCAATATACACACACTTTGTTTATC
GTTGAGCGGCGTGTATAAGTTTTATCTGGAAGCTAGTTACGGTAAATAGC
AGCGGCGTCCCGGCCAGTTGTTTGGGGACGGGTTTCAATCTTCGGGCAGC
GATATTTGCTTGCGGTTCATCCCCTGTAGTCATTCTCCGTCATCATTCCT
TCGATCATCCCCACCCCCTCGACTTCTCCCTTTCTTTTAACCCCTTGACG
CGGATAACGCGAGGAAAAATTGCCCCGAGTTTTTCGACATTTTCTTCTCT
TGTATTTTTGTTTTGGTATTCTCCTGTTTTCACCCTCCCCAACAGACAGT
AAAAATTCCGAATAGGCAGACTCGATCGACTTTCGTATCGACATTTTCAG
CCCCGCCTTGCCCCCCCCTCGCCCTCACCCCTCCTCCCTGCACCACTCAG
CGGGCAAGCGTCGATCAGCGACCAGGGGTTGGACCTCATGGACGGGCTGC
TAACGCTGGACCCTTCCAAGCGCACGTCAGCCAAGGATGCCCTGGACCAC
CGATGGTTTGCCTCGGAGAAGCCGTTGCCTACTCCTGTGGGAGAGATGCC
TCAG
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Coding sequence (CDS) from alignment at F-distichus_contig102143:1160..2013-

>mRNA_F-distichus_contig102143.181.1 ID=mRNA_F-distichus_contig102143.181.1|Name=mRNA_F-distichus_contig102143.181.1|organism=Fucus distichus monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at F-distichus_contig102143:1160..2013- (Fucus distichus monoicous)
GGCAAGACAGAGATCGATCAGCTCAACAAGATCTTTGGCGTCTTGGGGTC
TCCGACGGAGAAGCGATGGCCCGGATGGTCCAAGCTGCCGCTGGCGTCGA
AGATGGACTGGCGACACGGGAAAGACAGTCGGTTGCGGATGACATTTCCC
ACTACGGGGTTCAGGGCAAGACAGAGATCGATCAGCTCAACAAGATCTTT
GGCGTCTTGGGGTCTCCGACGGAGAAGCGATGGCCCGGATGGTCCAAGCT
GCCGCTGGCGTCGAAGATGGACTGGCGACACGGGAAAGACAGTCGGTTGC
GGATGACATTTCCCACTACGGGGTTCAGCGGGCAAGCGTCGATCAGCGAC
CAGGGGTTGGACCTCATGGACGGGCTGCTAACGCTGGACCCTTCCAAGCG
CACGTCAGCCAAGGATGCCCTGGACCACCGATGGTTTGCCTCGGAGAAGC
CGTTGCCTACTCCTGTGGGAGAGATGCCTCAGCGGGCAAGCGTCGATCAG
CGACCAGGGGTTGGACCTCATGGACGGGCTGCTAACGCTGGACCCTTCCA
AGCGCACGTCAGCCAAGGATGCCCTGGACCACCGATGGTTTGCCTCGGAG
AAGCCGTTGCCTACTCCTGTGGGAGAGATGCCTCAG
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