mRNA_F-distichus_contig10210.176.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10210.176.1
Unique NamemRNA_F-distichus_contig10210.176.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig10210.176.1 vs. uniprot
Match: D7FHC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHC5_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 4.320e-15
Identity = 39/80 (48.75%), Postives = 51/80 (63.75%), Query Frame = 3 
Query:   45 VGPGAKEAVLFEDLTSTAPATGTVEVLEEI-REGELNAEKGTRWGRRPLSEHIPSEEELEAWETTSGPSDSWLDRGINKI 281
            VG  A+ AV F++L    PA  T+ VL+E  +E   N     RWGRRP+ EHIP+EEE+EAW+T     D+WLDR IN +
Sbjct:   31 VGLNAEGAVTFDELPPAPPAPDTIGVLDEKEKESPWNEPDPPRWGRRPMPEHIPTEEEMEAWDTKMAVPDTWLDRAINGV 110
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BLAST of mRNA_F-distichus_contig10210.176.1 vs. uniprot
Match: A0A6H5K5S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5S7_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.460e-13
Identity = 41/80 (51.25%), Postives = 50/80 (62.50%), Query Frame = 3 
Query:   45 VGPGAKEAVLFEDLTSTAPATGTVEVLEEI-REGELNAEKGTRWGRRPLSEHIPSEEELEAWETTSGPSDSWLDRGINKI 281
            VG  A+ AV FE L    PA  T+ VL+E  +E   N     RWGRRP+ EHIPSEEE+EAW+T     D+WLDR IN +
Sbjct:  536 VGLNAEGAVTFEKLPPAPPAPDTIGVLDEKEKESPWNEPTPPRWGRRPMPEHIPSEEEMEAWDTKMAVFDTWLDRAINGV 615
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10210.176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHC5_ECTSI4.320e-1548.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5S7_9PHAE1.460e-1351.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10210contigF-distichus_contig10210:299..6553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size584
Cds size387
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10210.176.1prot_F-distichus_contig10210.176.1Fucus distichus monoicouspolypeptideF-distichus_contig10210 299..6356 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.4607165-CDS-F-distichus_contig10210:298..3341622928935.4607165-CDS-F-distichus_contig10210:298..334Fucus distichus monoicousCDSF-distichus_contig10210 299..334 +
1690885073.9104955-CDS-F-distichus_contig10210:298..3341690885073.9104955-CDS-F-distichus_contig10210:298..334Fucus distichus monoicousCDSF-distichus_contig10210 299..334 +
1622928935.471965-CDS-F-distichus_contig10210:5418..55701622928935.471965-CDS-F-distichus_contig10210:5418..5570Fucus distichus monoicousCDSF-distichus_contig10210 5419..5570 +
1690885073.9209387-CDS-F-distichus_contig10210:5418..55701690885073.9209387-CDS-F-distichus_contig10210:5418..5570Fucus distichus monoicousCDSF-distichus_contig10210 5419..5570 +
1622928935.4846413-CDS-F-distichus_contig10210:6126..62301622928935.4846413-CDS-F-distichus_contig10210:6126..6230Fucus distichus monoicousCDSF-distichus_contig10210 6127..6230 +
1690885073.930267-CDS-F-distichus_contig10210:6126..62301690885073.930267-CDS-F-distichus_contig10210:6126..6230Fucus distichus monoicousCDSF-distichus_contig10210 6127..6230 +
1622928935.5036933-CDS-F-distichus_contig10210:6261..63561622928935.5036933-CDS-F-distichus_contig10210:6261..6356Fucus distichus monoicousCDSF-distichus_contig10210 6262..6356 +
1690885073.9383392-CDS-F-distichus_contig10210:6261..63561690885073.9383392-CDS-F-distichus_contig10210:6261..6356Fucus distichus monoicousCDSF-distichus_contig10210 6262..6356 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.516821-UTR-F-distichus_contig10210:6356..65531622928935.516821-UTR-F-distichus_contig10210:6356..6553Fucus distichus monoicousUTRF-distichus_contig10210 6357..6553 +
1690885073.946157-UTR-F-distichus_contig10210:6356..65531690885073.946157-UTR-F-distichus_contig10210:6356..6553Fucus distichus monoicousUTRF-distichus_contig10210 6357..6553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10210.176.1

>prot_F-distichus_contig10210.176.1 ID=prot_F-distichus_contig10210.176.1|Name=mRNA_F-distichus_contig10210.176.1|organism=Fucus distichus monoicous|type=polypeptide|length=129bp
LGTKRERRPLPQGNVSGPAPRKRFCLKISRLRRRQRGRLRFWRRLGRENS
TQKKGLAGGDARCRNTSPARKSWRRGKPRQGLQIAGWIEESTRLRRGSPP
PPRHFLIRGFPSLCTTISITAVMLFLVL*
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mRNA from alignment at F-distichus_contig10210:299..6553+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10210.176.1 ID=mRNA_F-distichus_contig10210.176.1|Name=mRNA_F-distichus_contig10210.176.1|organism=Fucus distichus monoicous|type=mRNA|length=6255bp|location=Sequence derived from alignment at F-distichus_contig10210:299..6553+ (Fucus distichus monoicous)
TTGGGGACGAAGAGGGAGAGGAGACCGTTACCCCAGGCAAGGCGTTTTTT
AATTTTCATCTTGTGCACTGTAACCGTTCCCTAACCAGGCAAGACGTTTT
TTGTTTTTTATTTTGTGTACTGCAACCGCTCCTTCCCCCCAGACAAGGCA
TTTTTTTATGTTCATTTGGTGTACTGGATACAGTATTTTTTGTGTGTGAC
GTGTGTGTGACGTGTGTGTGTGTGTGTGTGTGTGTGTATACATATTTATG
AAATTGCACCTACCAATGATACATGGCATTTTTTTATGTTCATTTTTGTG
TACTGGATACAGTATCTTTTTTGTGTGACGTGTGTGTGTGTGTGTGTGAG
TGTGTGTGTATATTTATGAAATTGCACCTACCAATGATGTGTGTGTGTAT
ATTAAATTGCATATATTAAATTGCACATGACCGCGCAAAACGGTTTCCCG
GTCATCCTAGTCATTCTATGCCACTCGCATTGATCCTCCCGAGGGGGGAT
CAATGATACTTATTACGAATGTGTGTGTGTGTAAGTGTGTGTATTTATCA
AATTGCACATCACCGTTCAATCCAGCTCTGCCATTCTATTAATAGTCATT
ATAAGCCACTTGCATTGACCCTCCCCAAGGGGGTATCAATGATGCTTATT
ACAAATACCTCTGATCAGACGCGACAAAGGAGACACACTCTCTCTACTTG
TACGGTTCTTACTTAAGCCGTTGGTACCTTGTGCTTTCCCCCCCCTGCTT
CCTGCTACCATCTAGATTATCTGGTCCGGCTGCTACTGACGTTTTTTTCT
CTTTCCACCCGAGTCTCCCCCGTTTCCCACATCGCGTCTACAAATCTTGT
GCGGTTTCTTGCGCTTCTTCGCCTCTCCTCCGCCCTCCCCGATCCCGTTC
TCGTTCCCGTCCCCGTTCCGATCCTCGTCCCCATCTCCGCTACTGCCCTC
GTTTCCGTCGCTCGTTCCCATCCTGTGCTTGCCAAAGCGTCTCCAACCCC
GTCCCCGTCCCCGTCCCCGTTCCCGTTCCTGCCCCATCCCCGCTCCTGTC
CCCGCTCCCTTCCCAGTTCCCATCTTGCGTTCCTTCGTTCGCCTCCACCC
CAGTTTTCGTTCCCGCTCCATCTCCGTCTTCATCACCATTCACGTCCCCG
TTCCCGTCTCCGTTCCGTCTGTTCCTGTCTCCGTCCCCGCCCCGATTCCG
AATCCGCCCCCGACCCCGTTTGCCTCTTCCCGTCCTTCTGACCCTTTCCC
CCCTCGGTACGATGCGCGTGTACAGACACCGGGCCTTGCGAACGAAGCTG
TCGGGTGCCCGCAAGTGCCACTCCCTGTCTGCAGAGATGATGACGCATGC
GGAATGAAAGTGCTTGATCGCGTCTGCAACCCTTGTGCGGTTTCTTCGGC
TTCTTTGCCTCACTTCCGCGTTCCTCGATCTCGTCCTCATCCTCGTCCCC
GTTCCCATCTCCGTTACTGCTCTCGTTTCCGTCCCCGCTCCCATACCCGT
TCCCATCCTGTGTTCGCCTACGATTGTCAGTCCCCGTTCCCGCCCCGTTC
CCGCTCCCGTCCCCGTTGCCATCTTGCGTTCCTTCGGCCACCTTCCCTCC
CGTTCTCGTTCCCGCTCCGTCCCCGTCCCGTTCCCGTTCCCGACACCGTT
CCCACCCCCGACCCCGTTCCCGCCTCCGTTCCCGCTCCCGACTCCGATCC
CGCCCCCGACCCTGTTCGCTCCTTCCCTCCCCTCGGACCCGATTACCCCC
TCGGTACAATGCGCGTGTACATAAACCGGGCCTTGCGAACGGAGCTGTTG
GATGCCCGTAAGTACCACCGCGTGTTTGCAGAGATGGTGACGCGTGCGGA
ATGAAAGGGCCTGATCGCGTCTACAACTCTTGTGCGGTTTTTTAGGCTTC
TTCGCCTCTCCTCTGCCTTCCCCGATCCCGTCCTCGTTGTCGTCTCCGTT
CCCGTCCTCGTCCCCGTCCCATTTCCCCTACTGATCTCGTTTCCGTCCCC
GCTCGCCTCCCCGTTCCCATCCTGTGTTCGTCCACGGGTCTCCACCCCCG
TTCCCGTTCCCGTTCCCGTTCCTGCCCCTTCCCCGCTCCAATCACCGTTC
CCATCTTGCGTTCCTTCGATCGCCTACGCCCACATTCTCATCCCCGCTCT
GTCCTAGTCTCCATCACCGTCCCTGTTCCCGCCCCCGACCCCATTCGCTT
CGTCCGTCCCTCGGACTCGGTTACCCCCTCGGTACGATGCGCGTGTACAG
ACACCGGACCTTGCGAACGGAGCTGTCGGGTGCTCGCAATCGCCACCTCG
TGTCTGCAAAGATGGTGACGCGTGCGGAATGACAGTGCTTGCTGTAAACA
AAAGAAAATCGCCGGCGAAGACGTGCTGGTTCCGTCCCTTCCGCCAGATC
CTGGGACTCGTTGAAGTGTGTCTTCGACCTGTGCTCTACCCGTCTGATGG
CGAGCTCTTCGATGAAAGCATGCACATCTGAGCGAGCCTCAACGCGGCTT
TCTCGCCATAGCACACGTGGCCGCCTGGCCCTTGTCACGATGCGTCCACC
TGGCTATAGAAACAGACACGACCGCCTGGCCAACACGCTTCATGGCCGCC
TGGCCAAAACAAAATACAGGCCAGAATGCAACACGGCCGCCTGACCTTAA
CGCACCGTGGTCATGGGACGACCGCCTGGTCGAAGCGCAACACAATTCCA
CAGTTGTCTGGCCTCAACACGACGTGCTCGTACGGTAACTTGACCTTAAC
GTAATGTGACCACGCGACCGCCTGGTCGTAGTGCGAAATGATTCCACGGT
CGCCTGGCCTCAATGCACCTCGGCCGCCTGGCCTCGACATAGTCGGCCGC
TTGGCATTAACGTAATGCGATCGCCTGCTTACTTGTTCGCACGATCGCGA
TGCTCTTCCGCTCGCGCGGCATGTCGCCCGCGCCCTTTCGGTTGCTTCCT
TGGAGCTACATTTTACCCGCGCGGAGGATGAGGTAAAGATGTCGCTCGGT
CGCGCGTGCTCCTCCGTTCGCGATCGCTCGTATCATTTTGTCGTTGGGCA
ATTCCGCCCCCTTATTTTTGTTGTTGTTTGTTGCAATCATTTTGATACGT
ACTCCGTATTGTATGTTGACTGTTCTAGGGTAGGGAGGGGGAGGGCGGCG
TCAGACTAACATTTATTTACTTATATACCCGTGTTTATTTACACGCGCTT
ACCTCATCGGCTTGTTTGGGTTTCGTTGGGGGGGCCGGGGGTTAGCTCAC
ACCCCTACGTTCTCGTGGAGTTCGTACCTTCAGGGCTTGAACCGCTTTTC
CCCACTATTGATTTAATTGCACATAACCGCGCAATCTAGCCCTGTTATCT
GAGCCATTATATGCCACTCGTATTGATCCTCCCAGTGTGTGTGTTTGTGT
GTCTGTGTCTGTGTCTGTGTCTGTCTGTCTGTGTCTGTGTCTGTCTGTCT
CTGTGTCTGTCTGTCTGTCTCTGTCTGTCTCTGTCTCTGTCTCTGTGTCT
GTCTGTCTCTGTCTCTGTGTCTGTCTCTGTGTCTGTCTCTGTGTCTGTGT
ATTCATCAAAATACACATAACCGCGCAATCCGGCCCTGTCATTCTAGTCA
TTCTATTCCACTCGCATCGATCCTCCCGAGGGGTATTAAGGGATCAATGG
TGTGTGTGTGTGTGTGGGTGCGTGTTGGATTGTGCGTGCGCGCCTTGGAT
AAAGTTCCAAGCCTCTGATGGAAAACTCGGAAAGATCCTCAGAGATCGCA
AAGAGATCCCGTTGACACAACTATTAATACGAAAATTGTATGTATGTATG
GTTAGACTATCGTTTTTTGTTCCGAGGGTGGCAGTGTGTATGGCCATCAT
CGTCACATATCACATGCAGCAGAGTATGGATCAACCGGGTGAGGTTGTCA
ATCCCGCCGTAATCAGCTGCACAGGGAAAATTAATATTTCCCTGTCCCGT
TTCGTGTCGGAGAATTTGGTCTCGCGAAACGGGTTCGGCCATCCCCGCGC
CAGCCTGCTCATTCTCCACGCTCAGGCCGGATTTGGTGCTTACTCACGGG
ATTCCTCCCGATTTCCGCCGCTGCGTCCATTAATTTACCCAAATCGCCAT
ACGCTATCGGCGAAGTCCCGCGTTTATCGGGTCACGCAATTGCGCACCGA
TGGCGTTCACTGCCGTGAGTCCGCCGACATAGTGTCAGTAGTTCTCAAGG
TTGTTCTAGTAACGGATGCTGCCTCTGCAGGTCACCGTGGACCAATCAAT
GCGCGCTTCTCTTTTCCCACACCCACTAATGGTATGTATCGGGGGTGGGA
GTCACAGAGGGTGGCGGTGAAAGGTTTTCACTTCCACGTGGGCGTGTTGT
TCTTGTCCTGCGATGCTGGTACTGGTATATTTTATCGCCTGAACCCTTTC
TGAAGGTCGTGGTCAGAAGTGTTGGATAGTTTTTTTGTATCGAAAAAATA
ACACCGGCACCACCAGCAGAGCACGAAAGAGCCGTTCAACGATTGGGGGG
GGGGGGGATGTAACATATTTAGCCGCTACCGGGGACATATTTGACCAACC
CCTTGGTCAAATCCGATGGGTTCGGGGCAGGTTTGCCGACCATGTAGGGG
GTCATGTAGTCTCATTCCCGGAAAGGGCTGTTTTACTGGCCTCCCCGGGG
ACGAAATCATTGTATCCCCGCCCTCTCCAATCGTTGAACCCATTTTCAAA
TGGTCATCACTGGCACATGTTGCGAAAAATCTCGGCGGGATATTTTTGTT
GAACCTCTAGTGTTTGCTTTCGCTCGAGTATCGTTCGGTATGTTCTAAAC
CAGTTGATCCAATCATTTGACATCCTCTTTGATGAGTCGACTTTCCCCGA
ACCTTAAGGGCCTTGTGATTCTCTACAAACACCTACAGCTGTACGATCGC
AGAGACGGCTCAGCGTAAGCGATTGTTCTTTTAAAAGTGGAGTATTGCAT
CCGAAAGCTTTGGTAAAAAAGCGTTTGTTGATTCAATCGGTTGTTCCTGA
AGTGGATTGAAACCTCTCGAAAACGTATGCTTCAGTTTGCTGATAACCAA
TCATCTTGAAACCGACTTCAAACCGATACCGCATGCGCCCTGGAATTGTT
TGGACGGGGGTTCGTAACAGGGGAACGTGTCGGGCCCGGCGCCAAGGAAG
CGGTTTTGTTTGAAGATCTCACGTCTACGGCGCCGGCAACGGGGACGGTT
GAGGTTTTGGAGGAGATTAGGGAGGGAGAACTCAACGCAGAAAAAGGGAC
TCGCTGGGGGCGACGCCCGTTGGTGAGGCTGTGGAGAAAGAGCCCTCGAT
GTTATCGAGATAGCAGCACATTGGATTGGTGAATAATCGATGGCTATTCG
TTGGTAGACCATGTCGTTGGTGTGTCGTTTGATCTTGAATGATATTCGAT
GTTGTCACGCCTGTTTGTTGCTTCAATTTATTTGTCAATTGGAAAGGTTG
ATTGGTACGATTTAGTCGATTGGCATGATTTTTTAGTTGATTTGTACGAT
TTAGTCCTAAATCTACGATTTCGACGAATGGCTTGATACTATTGTAATCG
AGTCCGTTTTGACGTCATGTTGACTCCGAAACAACGTCTGACGCCCAGGC
CGATGGGCGATGAACGAACGACTCGATTCAATGATCCGTTCTTCCGTAAT
CATCGATCCGATCCGCGTTGATTTTTACGACCTTTTTCTTCAGGCAATCA
TTGGCCAGCATCTATACCCCTCCCTCCTAACGAACTATGCACCGACACCG
CCTCCCCCGCACGTCGTCCCCCGCCTAACGGACTATGGCCTTTTTCCTCG
GGCGATATGACGGACGACAAACTAGCAGTCGGAACACATCCCCAGCGAGG
AAGAGCTGGAGGCGTGGGAAACCACGTCAGGGCCTTCAGATAGCTGGCTG
GATCGAGGAATCAACAAGATTGCGGAGAGGTTTTTTGGAAGAGGGAAGGG
TGGGGGCGACTGACCCCCCCCCCCCCTCGACATTTTCTAATTAGAGGTTT
CCCTTCGCTATGTACTACTATTAGTATTACTGCAGTAATGCTATTTCTAG
TACTATGACCACTGATAGCAATAGTAATGGTTGTAGTAACAGTAAGAAGA
ATGTGAGGGTGTGCAGTTTGTAAGCTTGGCTTTTAATCATTTCGCTGTTG
TGGAATATCAAGAATTTTTGTGAGTGTTTCGACAAGTCGTTCGTGTAGAT
CCATTCGGCCTTTGAGTGAAGCCATCTCTTTATGGGAAACAAAAACGACG
ATATA
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Coding sequence (CDS) from alignment at F-distichus_contig10210:299..6553+

>mRNA_F-distichus_contig10210.176.1 ID=mRNA_F-distichus_contig10210.176.1|Name=mRNA_F-distichus_contig10210.176.1|organism=Fucus distichus monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at F-distichus_contig10210:299..6553+ (Fucus distichus monoicous)
TTGGGGACGAAGAGGGAGAGGAGACCGTTACCCCAGTTGGGGACGAAGAG
GGAGAGGAGACCGTTACCCCAGGGGAACGTGTCGGGCCCGGCGCCAAGGA
AGCGGTTTTGTTTGAAGATCTCACGTCTACGGCGCCGGCAACGGGGACGG
TTGAGGTTTTGGAGGAGATTAGGGAGGGAGAACTCAACGCAGAAAAAGGG
ACTCGCTGGGGGCGACGCCCGTTGGGGAACGTGTCGGGCCCGGCGCCAAG
GAAGCGGTTTTGTTTGAAGATCTCACGTCTACGGCGCCGGCAACGGGGAC
GGTTGAGGTTTTGGAGGAGATTAGGGAGGGAGAACTCAACGCAGAAAAAG
GGACTCGCTGGGGGCGACGCCCGTTGTCGGAACACATCCCCAGCGAGGAA
GAGCTGGAGGCGTGGGAAACCACGTCAGGGCCTTCAGATAGCTGGCTGGA
TCGAGGAATCAACAAGATTGCGGAGAGGTTTCGGAACACATCCCCAGCGA
GGAAGAGCTGGAGGCGTGGGAAACCACGTCAGGGCCTTCAGATAGCTGGC
TGGATCGAGGAATCAACAAGATTGCGGAGAGGTTCCCCCCCCCCCCCTCG
ACATTTTCTAATTAGAGGTTTCCCTTCGCTATGTACTACTATTAGTATTA
CTGCAGTAATGCTATTTCTAGTACTATGACCCCCCCCCCCCCTCGACATT
TTCTAATTAGAGGTTTCCCTTCGCTATGTACTACTATTAGTATTACTGCA
GTAATGCTATTTCTAGTACTATGA
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