mRNA_F-distichus_contig101839.152.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig101839.152.1
Unique NamemRNA_F-distichus_contig101839.152.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig101839.152.1 vs. uniprot
Match: A0A6H5K552_9PHAE (Condensin complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K552_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 3.430e-17
Identity = 36/42 (85.71%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:   37 QEEQSGVTVPFYFICILHLANEKGLRLEGRQDLLDFSVSSDP 162
            +EEQ+GVTVPFYFIC+LHLANEKGL+LEGR DLLDFSV+SDP
Sbjct:  323 KEEQTGVTVPFYFICLLHLANEKGLKLEGRDDLLDFSVASDP 364
[Close]
BLAST of mRNA_F-distichus_contig101839.152.1 vs. uniprot
Match: D8LD70_ECTSI (Condensin complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD70_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 6.420e-16
Identity = 35/42 (83.33%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:   37 QEEQSGVTVPFYFICILHLANEKGLRLEGRQDLLDFSVSSDP 162
            +EEQ+GVTV FYFIC+LHLANEKGL+LEGR DLLDFSV+SDP
Sbjct:  792 KEEQTGVTVSFYFICLLHLANEKGLKLEGRDDLLDFSVASDP 833
[Close]
BLAST of mRNA_F-distichus_contig101839.152.1 vs. uniprot
Match: A0A835Z1S3_9STRA (Condensin complex subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S3_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 4.010e-12
Identity = 28/40 (70.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:   37 QEEQSGVTVPFYFICILHLANEKGLRLEGRQDLLDFSVSS 156
            +E+QSGVTV +YFIC+LHLANEKGLRLEG+ DL+DF + +
Sbjct:  800 KEDQSGVTVSYYFICLLHLANEKGLRLEGQDDLMDFGIGA 839
[Close]
BLAST of mRNA_F-distichus_contig101839.152.1 vs. uniprot
Match: A0A7S3GUA6_9STRA (Condensin complex subunit 2 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GUA6_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 9.250e-10
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   46 QSGVTVPFYFICILHLANEKGLRLEGRQDLLDFSVSSD 159
            Q  VT+PFYFIC+LHLANE GLR+E R+D+ D  +S D
Sbjct:   63 QQDVTLPFYFICLLHLANEHGLRIEDREDMSDLVISMD 100
[Close]
BLAST of mRNA_F-distichus_contig101839.152.1 vs. uniprot
Match: A0A7S1XKV0_9STRA (Condensin complex subunit 2 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XKV0_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.060e-9
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   40 EEQSGVTVPFYFICILHLANEKGLRLEG--RQDLLDFSV 150
            E Q+GVTVPFYFIC+LHLANEKGL+LE   R DL DF +
Sbjct:  461 EAQTGVTVPFYFICLLHLANEKGLKLENPNRADLTDFRI 499
[Close]
BLAST of mRNA_F-distichus_contig101839.152.1 vs. uniprot
Match: A0A7S2SDZ0_9STRA (Condensin complex subunit 2 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SDZ0_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.870e-9
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   43 EQSGVTVPFYFICILHLANEKGLRLEGRQDLLDFSV 150
            +   VTVPFYFIC+LHLANE GL LEGR+DL DF +
Sbjct:  577 DDPNVTVPFYFICLLHLANENGLELEGREDLSDFII 612
[Close]
BLAST of mRNA_F-distichus_contig101839.152.1 vs. uniprot
Match: A0A6T5XJK6_9STRA (Condensin complex subunit 2 n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A6T5XJK6_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 6.410e-9
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   40 EEQSGVTVPFYFICILHLANEKGLRLEGRQDLLDFSV 150
            + QS VTVPFYFIC+LHLANEKGLRLE  + L DF++
Sbjct:   89 QSQSDVTVPFYFICLLHLANEKGLRLES-EGLQDFNI 124
[Close]
BLAST of mRNA_F-distichus_contig101839.152.1 vs. uniprot
Match: A0A7S3LMK8_9STRA (Condensin complex subunit 2 n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LMK8_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 7.220e-9
Identity = 23/37 (62.16%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   43 EQSGVTVPFYFICILHLANEKGLRLEGRQDLLDFSVS 153
            + S VT+P+YFIC+LHLANEKGL L+G +DL DF ++
Sbjct:  553 DDSSVTIPYYFICVLHLANEKGLELKGSEDLSDFIIN 589
[Close]
BLAST of mRNA_F-distichus_contig101839.152.1 vs. uniprot
Match: A0A7S4HYK3_9STRA (Condensin complex subunit 2 n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HYK3_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 9.930e-9
Identity = 28/45 (62.22%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:   28 LPFQEEQSGVTVPFYFICILHLANEKGLRLEGR-QDLLDFSVSSD 159
            L   + QS VTVPFYFICILHLANEKGL+L+    +L+DF +S D
Sbjct:  855 LEASQSQSEVTVPFYFICILHLANEKGLKLDSTGHNLIDFVISRD 899
[Close]
BLAST of mRNA_F-distichus_contig101839.152.1 vs. uniprot
Match: A0A3L6USJ3_9STRA (Condensin complex subunit 2 (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6USJ3_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.500e-8
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:   52 GVTVPFYFICILHLANEKGLRLEGRQDLLDFSVSSDP 162
             VTV FYFIC+LHLAN+KGL L G+ D+ DF +  DP
Sbjct:   78 NVTVSFYFICMLHLANDKGLELVGQDDMRDFQILHDP 114
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101839.152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K552_9PHAE3.430e-1785.71Condensin complex subunit 2 n=1 Tax=Ectocarpus sp.... [more]
D8LD70_ECTSI6.420e-1683.33Condensin complex subunit 2 n=1 Tax=Ectocarpus sil... [more]
A0A835Z1S3_9STRA4.010e-1270.00Condensin complex subunit 2 n=1 Tax=Tribonema minu... [more]
A0A7S3GUA6_9STRA9.250e-1063.16Condensin complex subunit 2 n=1 Tax=Spumella elong... [more]
A0A7S1XKV0_9STRA2.060e-971.79Condensin complex subunit 2 n=1 Tax=Phaeomonas par... [more]
A0A7S2SDZ0_9STRA3.870e-969.44Condensin complex subunit 2 n=1 Tax=labyrinthulid ... [more]
A0A6T5XJK6_9STRA6.410e-970.27Condensin complex subunit 2 n=1 Tax=Thalassionema ... [more]
A0A7S3LMK8_9STRA7.220e-962.16Condensin complex subunit 2 n=1 Tax=Aplanochytrium... [more]
A0A7S4HYK3_9STRA9.930e-962.22Condensin complex subunit 2 n=1 Tax=Odontella auri... [more]
A0A3L6USJ3_9STRA1.500e-862.16Condensin complex subunit 2 (Fragment) n=3 Tax=Aph... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101839contigF-distichus_contig101839:1227..1394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue1.6e-13
Seed eggNOG ortholog2880.D8LD70
Preferred nameBRN1
KEGG koko:K06676
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000785,GO:0000790,GO:0000792,GO:0000793,GO:0000794,GO:0000796,GO:0000799,GO:0000819,GO:0001671,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005720,GO:0005737,GO:0006323,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007080,GO:0008047,GO:0008150,GO:0008608,GO:0009987,GO:0010911,GO:0010912,GO:0016043,GO:0019899,GO:0022402,GO:0030234,GO:0030261,GO:0031974,GO:0031981,GO:0032781,GO:0032991,GO:0033553,GO:0034506,GO:0043085,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043462,GO:0044093,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044547,GO:0044815,GO:0048285,GO:0050000,GO:0050790,GO:0051179,GO:0051234,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051336,GO:0051345,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060589,GO:0060590,GO:0061638,GO:0065007,GO:0065009,GO:0070013,GO:0070058,GO:0071103,GO:0071840,GO:0072586,GO:0072587,GO:0098687,GO:0098772,GO:0098813,GO:0140014,GO:1903047,GO:2000371,GO:2000373
EggNOG free text desc.DNA topoisomerase (ATP-hydrolyzing) activator activity
EggNOG OGsCOG5229@1,KOG2328@2759
COG Functional cat.BD
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons1
Model size168
Cds size168
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928933.1556094-CDS-F-distichus_contig101839:1226..13941622928933.1556094-CDS-F-distichus_contig101839:1226..1394Fucus distichus monoicousCDSF-distichus_contig101839 1227..1394 +
1690885072.5871499-CDS-F-distichus_contig101839:1226..13941690885072.5871499-CDS-F-distichus_contig101839:1226..1394Fucus distichus monoicousCDSF-distichus_contig101839 1227..1394 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101839.152.1prot_F-distichus_contig101839.152.1Fucus distichus monoicouspolypeptideF-distichus_contig101839 1227..1394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig101839.152.1

>prot_F-distichus_contig101839.152.1 ID=prot_F-distichus_contig101839.152.1|Name=mRNA_F-distichus_contig101839.152.1|organism=Fucus distichus monoicous|type=polypeptide|length=56bp
SVLSPCATPLPFQEEQSGVTVPFYFICILHLANEKGLRLEGRQDLLDFSV
SSDPC*
back to top

mRNA from alignment at F-distichus_contig101839:1227..1394+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig101839.152.1 ID=mRNA_F-distichus_contig101839.152.1|Name=mRNA_F-distichus_contig101839.152.1|organism=Fucus distichus monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at F-distichus_contig101839:1227..1394+ (Fucus distichus monoicous)
AGTGTATTGTCACCATGCGCCACACCGTTACCTTTTCAGGAGGAGCAGTC
AGGCGTGACCGTGCCCTTCTACTTCATCTGCATCCTACACCTGGCCAATG
AGAAGGGGCTGAGGCTCGAAGGTCGCCAAGATCTCCTGGACTTTTCGGTG
TCGAGCGATCCGTGCTAG
back to top

Coding sequence (CDS) from alignment at F-distichus_contig101839:1227..1394+

>mRNA_F-distichus_contig101839.152.1 ID=mRNA_F-distichus_contig101839.152.1|Name=mRNA_F-distichus_contig101839.152.1|organism=Fucus distichus monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at F-distichus_contig101839:1227..1394+ (Fucus distichus monoicous)
AGTGTATTGTCACCATGCGCCACACCGTTACCTTTTCAGGAGGAGCAGTC
AGGCGTGACCGTGCCCTTCTACTTCATCTGCATCCTACACCTGGCCAATG
AGAAGGGGCTGAGGCTCGAAGGTCGCCAAGATCTCCTGGACTTTTCGGTG
TCGAGCGATCCGTGCTAGAGTGTATTGTCACCATGCGCCACACCGTTACC
TTTTCAGGAGGAGCAGTCAGGCGTGACCGTGCCCTTCTACTTCATCTGCA
TCCTACACCTGGCCAATGAGAAGGGGCTGAGGCTCGAAGGTCGCCAAGAT
CTCCTGGACTTTTCGGTGTCGAGCGATCCGTGCTAG
back to top