mRNA_F-distichus_contig101782.149.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig101782.149.1 vs. uniprot
Match: D1GJT2_FUCVE (50S ribosomal protein L3, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJT2_FUCVE) HSP 1 Score: 263 bits (672), Expect = 2.720e-87 Identity = 162/166 (97.59%), Postives = 164/166 (98.80%), Query Frame = 1
Query: 1 NNNNAVQIGYLKRQVLKLNKAELGHLTKNGLLPLLYLREYKVPDPTNYSLGQVIDVDYFQIGQFVNVSGKSIGKGFSGNQKRHNFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXMAGQLGAKKVTISKLEILGIDSKHSLLILKGSVPGKSGNLLNVSPSDKF 498
N +AVQIGYLKRQVLKLNKAELGHLTKNGLLPLLYLREYKVPDPTNYSLGQVI+VDYFQIGQFVNVSGKSIGKGFSGNQKRHNFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXMAGQLGAKKVTISKLEILGIDSKHSLLILKGSVPGKSGNLLNVSPSDKF
Sbjct: 44 NGYSAVQIGYLKRQVLKLNKAELGHLTKNGLLPLLYLREYKVPDPTNYSLGQVINVDYFQIGQFVNVSGKSIGKGFSGNQKRHNFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXMAGQLGAKKVTISKLEILGIDSKHSLLILKGSVPGKSGNLLNVSPSDKF 209
BLAST of mRNA_F-distichus_contig101782.149.1 vs. uniprot
Match: A0A8F0JYJ1_9PHAE (Ribosomal protein L3 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JYJ1_9PHAE) HSP 1 Score: 183 bits (465), Expect = 5.210e-56 Identity = 121/164 (73.78%), Postives = 138/164 (84.15%), Query Frame = 1
Query: 1 NNNNAVQIGYLKRQVLKLNKAELGHLTKNGLLPLLYLREYKVPDPTNYSLGQVIDVDYFQIGQFVNVSGKSIGKGFSGNQKRHNFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXMAGQLGAKKVTISKLEILGIDSKHSLLILKGSVPGKSGNLLNVSPSD 492
N NAVQIGY K Q L L KAELGHL KNGL PL +L EY+V + +YSLGQV++VD+FQIGQFVN++GKSIGKGFSGN KRH FKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXX GAK +T+SKL+ILGID K++LLILKGSVPGK GNL+ + PS+
Sbjct: 33 NGYNAVQIGYSKGQKLNLKKAELGHLKKNGLPPLSHLCEYRVTEQEDYSLGQVLNVDHFQIGQFVNITGKSIGKGFSGNHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAKTITVSKLKILGIDLKNNLLILKGSVPGKPGNLIKIIPSN 196
BLAST of mRNA_F-distichus_contig101782.149.1 vs. uniprot
Match: A0A7S6ZPA7_9STRA (50S ribosomal protein L3, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPA7_9STRA) HSP 1 Score: 169 bits (428), Expect = 2.970e-50 Identity = 112/164 (68.29%), Postives = 132/164 (80.49%), Query Frame = 1
Query: 1 NNNNAVQIGYLKRQVLKLNKAELGHLTKNGLLPLLYLREYKVPDPTNYSLGQVIDVDYFQIGQFVNVSGKSIGKGFSGNQKRHNFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXMAGQLGAKKVTISKLEILGIDSKHSLLILKGSVPGKSGNLLNVSPSD 492
N NA+Q+GY + + KL K + GHL K G PL +LREYKV + LG+ + VD F+IGQ+VN+SG+SIGKGFSGNQKRHNFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXX MAGQ GAKK+TISKL I+GID +LLI+KG+VPGK GNLLN+ S+
Sbjct: 44 NGYNAIQLGYSQVKPEKLTKPKHGHLKKVGCFPLYHLREYKVSKIDKFLLGETLTVDIFKIGQYVNISGQSIGKGFSGNQKRHNFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXKMAGQYGAKKITISKLRIIGIDKTRNLLIIKGNVPGKPGNLLNIVGSN 207
BLAST of mRNA_F-distichus_contig101782.149.1 vs. uniprot
Match: B2XTF5_HETAK (50S ribosomal protein L3, chloroplastic n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XTF5_HETAK) HSP 1 Score: 167 bits (424), Expect = 1.230e-49 Identity = 84/160 (52.50%), Postives = 109/160 (68.12%), Query Frame = 1
Query: 10 NAVQIGYLKRQVLKLNKAELGHLTKNGLLPLLYLREYKVPDPTNYSLGQVIDVDYFQIGQFVNVSGKSIGKGFSGNQKRHNFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXMAGQLGAKKVTISKLEILGIDSKHSLLILKGSVPGKSGNLLNVSPS 489
NA+QIG+L +++ NKAE GH TK G P L+E+KV N++LGQ I VD F+IGQFVNV+G+SIGKGFSG QKR+NF RGPMTH MAGQ G K VTISKL++L IDSK +LL+LKG++PGK+GN+++++PS
Sbjct: 47 NAIQIGFLAKKIKNTNKAEQGHFTKVGCQPQRILKEFKVESTENFTLGQQIKVDCFEIGQFVNVTGRSIGKGFSGLQKRYNFSRGPMTHGSKNHRLPGSIGAGTTPGRVLPGKKMAGQYGNKNVTISKLKVLNIDSKENLLLLKGAIPGKAGNIVSIAPS 206
BLAST of mRNA_F-distichus_contig101782.149.1 vs. uniprot
Match: A0A6M3WW27_PTELU (50S ribosomal protein L3, chloroplastic n=1 Tax=Pterocladia lucida TaxID=31408 RepID=A0A6M3WW27_PTELU) HSP 1 Score: 166 bits (420), Expect = 4.680e-49 Identity = 80/156 (51.28%), Postives = 109/156 (69.87%), Query Frame = 1
Query: 13 AVQIGYLKRQVLKLNKAELGHLTKNGLLPLLYLREYKVPDPTNYSLGQVIDVDYFQIGQFVNVSGKSIGKGFSGNQKRHNFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXMAGQLGAKKVTISKLEILGIDSKHSLLILKGSVPGKSGNLLNV 480
A+QIGY+K ++ K+NKAE GHL+K+G PL YL EYK+ P +LG+VI V+ FQIGQ VN+SGKSIGKGFSG QKRHNF RGPM+H MAG++G +K+TI L I+ I+++H+L+I+KG+VPGKSGN++++
Sbjct: 48 AIQIGYIKTRIEKMNKAEAGHLSKSGAPPLKYLCEYKINSPEQINLGEVITVEKFQIGQSVNISGKSIGKGFSGYQKRHNFSRGPMSHGSKNHRQPGSIGAGTTPGRVFPGKRMAGRMGGEKITIKNLPIIDINTEHNLIIVKGTVPGKSGNIISI 203
BLAST of mRNA_F-distichus_contig101782.149.1 vs. uniprot
Match: A0A1L2F1Q4_9PHAE (Ribosomal protein L3 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1Q4_9PHAE) HSP 1 Score: 166 bits (419), Expect = 7.480e-49 Identity = 110/161 (68.32%), Postives = 124/161 (77.02%), Query Frame = 1
Query: 1 NNNNAVQIGYLKRQVLKLNKAELGHLTKNGLLPLLYLREYKVPDPTNYSLGQVIDVDYFQIGQFVNVSGKSIGKGFSGNQKRHNFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXMAGQLGAKKVTISKLEILGIDSKHSLLILKGSVPGKSGNLLNVS 483
N NAVQIGYLKRQ +++ KAELGHLTKNGL PLL+LREY+VPD NYSLGQ+ GKSIGKGFSGNQKRH FKRGPMTH XXXXXXXXXXXXXXXXXXXXXX +T+SK+++LGID K +LLILKGSVPGKSGNLL++S
Sbjct: 45 NGYNAVQIGYLKRQPIRVKKAELGHLTKNGLPPLLHLREYRVPDLNNYSLGQMXXXXXXXXXXXXXXXGKSIGKGFSGNQKRHKFKRGPMTHGSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITVSKVQVLGIDEKQNLLILKGSVPGKSGNLLSIS 205
BLAST of mRNA_F-distichus_contig101782.149.1 vs. uniprot
Match: A0A514CPW3_9STRA (50S ribosomal protein L3, chloroplastic n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A514CPW3_9STRA) HSP 1 Score: 161 bits (407), Expect = 4.610e-47 Identity = 82/162 (50.62%), Postives = 103/162 (63.58%), Query Frame = 1
Query: 10 NAVQIGYLKRQVLKLNKAELGHLTKNGLLPLLYLREYKVPDPTNYSLGQVIDVDYFQIGQFVNVSGKSIGKGFSGNQKRHNFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXMAGQLGAKKVTISKLEILGIDSKHSLLILKGSVPGKSGNLLNVSPSDK 495
NA+QIGY L K ELGHL K+ + PL YL+EY + +++LG I+ F+ G +V++SGKSIGKGFSGNQKRHNF RGPMTH MAGQLG K T+SKLE+L IDSK +LLI+KGSVPGK GNLL++ P+ +
Sbjct: 46 NAIQIGYQNSSTKHLTKPELGHLKKSQIQPLRYLKEYXXXEVNDFTLGXXINXQNFKEGDYVDISGKSIGKGFSGNQKRHNFSRGPMTHGSKNHREPGSIGQGSTPGRVFPGKKMAGQLGGKTTTVSKLEVLKIDSKENLLIVKGSVPGKPGNLLSIKPTKR 207
BLAST of mRNA_F-distichus_contig101782.149.1 vs. uniprot
Match: UPI001EF2FE6F (50S ribosomal protein L3 n=1 Tax=Spirulina major TaxID=270636 RepID=UPI001EF2FE6F) HSP 1 Score: 158 bits (400), Expect = 4.550e-46 Identity = 90/160 (56.25%), Postives = 119/160 (74.38%), Query Frame = 1
Query: 13 AVQIGYLKRQVLKLNKAELGHLTKNGLLPLLYLREYKVPDPTNYSLGQVIDVDYFQIGQFVNVSGKSIGKGFSGNQKRHNFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXMAGQLGAKKVTISKLEILGIDSKHSLLILKGSVPGKSGNLLNVSPSD 492
+VQIGY + + +NK ELGHL K+G PL +L+EY V +P +Y LGQ + D F GQ V+VSGKSIG+GFSG QKRHNF+RGPM+H XXXXXXXXXXXX MAG+ G KKVT+ KLEI+ +D++ +LL++KG++PGK+GNLL +SP++
Sbjct: 38 SVQIGYDEVKPKIINKPELGHLAKSGASPLRHLKEYHVDNPDSYELGQTVKADIFTPGQLVDVSGKSIGRGFSGYQKRHNFRRGPMSHGSKNHREPGSTGXXXXXXXXXXXXKMAGRYGGKKVTVRKLEIVQVDAERNLLLIKGAIPGKTGNLLTISPAN 197
BLAST of mRNA_F-distichus_contig101782.149.1 vs. uniprot
Match: A0A0K1DC17_PSEMU (50S ribosomal protein L3, chloroplastic n=9 Tax=Bacillariaceae TaxID=33852 RepID=A0A0K1DC17_PSEMU) HSP 1 Score: 155 bits (392), Expect = 1.140e-44 Identity = 74/161 (45.96%), Postives = 106/161 (65.84%), Query Frame = 1
Query: 10 NAVQIGYLKRQVLKLNKAELGHLTKNGLLPLLYLREYKVPDPTNYSLGQVIDVDYFQIGQFVNVSGKSIGKGFSGNQKRHNFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXMAGQLGAKKVTISKLEILGIDSKHSLLILKGSVPGKSGNLLNVSPSD 492
NA+Q+GY L ++ELGHL K+ + PL YL+E++VP+ ++ +GQV++VD + Q VN+ GK++GKGFSG QKRHNF RGPMTH MAGQLG K TI KL+++ ++S+ ++LI+KGSVPGK GNLL+++PS+
Sbjct: 58 NAIQVGYSNTSNKSLTQSELGHLQKSNIQPLKYLKEFRVPNVDDFEVGQVLNVDLLSVDQLVNIKGKTVGKGFSGLQKRHNFTRGPMTHGSKNHRAPGSIGMGTTPGRVLPGKKMAGQLGNKLTTIKKLKVIQLNSEENILIIKGSVPGKPGNLLSITPSN 218
BLAST of mRNA_F-distichus_contig101782.149.1 vs. uniprot
Match: A0A514CPP1_9STRA (50S ribosomal protein L3, chloroplastic n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A514CPP1_9STRA) HSP 1 Score: 154 bits (390), Expect = 1.820e-44 Identity = 80/160 (50.00%), Postives = 104/160 (65.00%), Query Frame = 1
Query: 13 AVQIGYLKRQVLKLNKAELGHLTKNGLLPLLYLREYKVPDPTNYSLGQVIDVDYFQIGQFVNVSGKSIGKGFSGNQKRHNFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXMAGQLGAKKVTISKLEILGIDSKHSLLILKGSVPGKSGNLLNVSPSD 492
A+Q+GY + K K ELGHL K L L YL+EY + + ++ LGQ+IDV F+ G+FV+V+GKSIGKGF+GNQKRH+F RGPM+H MAG LGA VTI KL+IL +D+K +LLILKGSVPGK GNLL++ P++
Sbjct: 48 ALQLGYHEVPTRKCTKPELGHLNKANLASLKYLKEYLINNVEDFQLGQIIDVQTFKEGEFVDVTGKSIGKGFAGNQKRHHFTRGPMSHGSKNHRAPGSIGQGTTPGRVYPGKKMAGHLGASTVTIKKLKILKVDTKQNLLILKGSVPGKPGNLLSIRPTN 207 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101782.149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig101782.149.1 >prot_F-distichus_contig101782.149.1 ID=prot_F-distichus_contig101782.149.1|Name=mRNA_F-distichus_contig101782.149.1|organism=Fucus distichus monoicous|type=polypeptide|length=167bp NNNNAVQIGYLKRQVLKLNKAELGHLTKNGLLPLLYLREYKVPDPTNYSLback to top mRNA from alignment at F-distichus_contig101782:1442..1942- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig101782.149.1 ID=mRNA_F-distichus_contig101782.149.1|Name=mRNA_F-distichus_contig101782.149.1|organism=Fucus distichus monoicous|type=mRNA|length=501bp|location=Sequence derived from alignment at F-distichus_contig101782:1442..1942- (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig101782:1442..1942- >mRNA_F-distichus_contig101782.149.1 ID=mRNA_F-distichus_contig101782.149.1|Name=mRNA_F-distichus_contig101782.149.1|organism=Fucus distichus monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at F-distichus_contig101782:1442..1942- (Fucus distichus monoicous)back to top |