mRNA_F-distichus_contig101782.148.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig101782.148.1 vs. uniprot
Match: D1GJT1_FUCVE (50S ribosomal protein L4, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJT1_FUCVE) HSP 1 Score: 392 bits (1008), Expect = 7.310e-136 Identity = 211/215 (98.14%), Postives = 213/215 (99.07%), Query Frame = 1
Query: 1 MISEKTLTFPIKLLTGNESKDKITLTLKVKDGNETNNYVIHRAYLTQRLNERQGTASTLTRAEVRGGGRKPWRQKGMGRARAGSNRSPLWKGGGVSFGPKPKLYSNKINRKEWKLGLRSLLISKQNNIIIIDNLNITEYKTKNIIKILKIFNINLSEKTLFILPKIEENLLRSTNNIKTIKLTIASNLNLKQILLAKNLLVTKDSLKIIEDTYNG 645
MISEKTLTFPIKLLTGNESKDKITLTLKVKD NETNNYVIHRAYLTQRLNERQGTASTLTRAEVRGGGRKP RQKGMGRARAGSNRSPLWKGGGVSFGPKPKLYSNKINRKEWKLGLRSLLISKQNNIII+DNLNITEYKTKNIIKILKIFNINLSEKTLFILPKIE+NLLRSTNNIKTIKLTIASNLNLKQILLAKNLLVTKDSLKIIEDTYNG
Sbjct: 1 MISEKTLTFPIKLLTGNESKDKITLTLKVKDANETNNYVIHRAYLTQRLNERQGTASTLTRAEVRGGGRKPLRQKGMGRARAGSNRSPLWKGGGVSFGPKPKLYSNKINRKEWKLGLRSLLISKQNNIIIVDNLNITEYKTKNIIKILKIFNINLSEKTLFILPKIEKNLLRSTNNIKTIKLTIASNLNLKQILLAKNLLVTKDSLKIIEDTYNG 215
BLAST of mRNA_F-distichus_contig101782.148.1 vs. uniprot
Match: A0A141BSP0_9PHAE (50S ribosomal protein L4, chloroplastic n=13 Tax=Sargassum TaxID=3015 RepID=A0A141BSP0_9PHAE) HSP 1 Score: 320 bits (819), Expect = 3.760e-107 Identity = 172/215 (80.00%), Postives = 195/215 (90.70%), Query Frame = 1
Query: 1 MISEKTLTFPIKLLTGNESKDKITLTLKVKDGNETNNYVIHRAYLTQRLNERQGTASTLTRAEVRGGGRKPWRQKGMGRARAGSNRSPLWKGGGVSFGPKPKLYSNKINRKEWKLGLRSLLISKQNNIIIIDNLNITEYKTKNIIKILKIFNINLSEKTLFILPKIEENLLRSTNNIKTIKLTIASNLNLKQILLAKNLLVTKDSLKIIEDTYNG 645
M+S+K LTF IK L G+ DK TL+LKVK+ N+TNNYVI RAYLTQRLNERQGTA+TLTRAEVRGGGRKPWRQKGMGRARAGSN SPLWKGGGVSFGPKPKLY NKINRKEWKLGLR+LL++K+ NI +I+N++ITEYKTKNIIKIL+ F+INL++ TL ILP IE+ LLRST+NIKTIKLT+A+NLNLKQILLAKNLLV KDSLKIIEDTYNG
Sbjct: 1 MVSKKILTFTIKSLKGDT--DKTTLSLKVKELNDTNNYVIQRAYLTQRLNERQGTANTLTRAEVRGGGRKPWRQKGMGRARAGSNTSPLWKGGGVSFGPKPKLYLNKINRKEWKLGLRNLLVAKEKNITVIENISITEYKTKNIIKILEDFSINLAKDTLIILPTIEKELLRSTSNIKTIKLTLANNLNLKQILLAKNLLVIKDSLKIIEDTYNG 213
BLAST of mRNA_F-distichus_contig101782.148.1 vs. uniprot
Match: A0A0R6LUU1_UNDPI (50S ribosomal protein L4, chloroplastic n=28 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUU1_UNDPI) HSP 1 Score: 312 bits (800), Expect = 3.100e-104 Identity = 163/215 (75.81%), Postives = 185/215 (86.05%), Query Frame = 1
Query: 1 MISEKTLTFPIKLLTGNESKDKITLTLKVKDGNETNNYVIHRAYLTQRLNERQGTASTLTRAEVRGGGRKPWRQKGMGRARAGSNRSPLWKGGGVSFGPKPKLYSNKINRKEWKLGLRSLLISKQNNIIIIDNLNITEYKTKNIIKILKIFNINLSEKTLFILPKIEENLLRSTNNIKTIKLTIASNLNLKQILLAKNLLVTKDSLKIIEDTYNG 645
M +K LTFP+K+LTG ES D+ITLTLK+K+ T NYVI RAYL QR NERQGTA+TLTRAEV+GGGRKPWRQKG GRARAGSNRSPLWKGGGVSFGPKPK YS+KINRKEW+L LRSLLI+KQ +I I+DN N EYKT NIIK+L FNINL E TL ++PKI+E LL+ST NIKTIKL +A+NLNLKQILLAKNLL+TKDSLK IE+TYNG
Sbjct: 1 MALQKILTFPVKILTGEESGDEITLTLKLKEATNTINYVIQRAYLAQRSNERQGTANTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKFYSSKINRKEWQLSLRSLLIAKQKDITIVDNFNFLEYKTSNIIKVLNTFNINLFENTLIVVPKIDEKLLKSTRNIKTIKLIVANNLNLKQILLAKNLLITKDSLKTIEETYNG 215
BLAST of mRNA_F-distichus_contig101782.148.1 vs. uniprot
Match: A0A8F0F722_AKKLU (Ribosomal protein L4 n=1 Tax=Akkesiphycus lubricus TaxID=3022 RepID=A0A8F0F722_AKKLU) HSP 1 Score: 311 bits (798), Expect = 6.240e-104 Identity = 167/215 (77.67%), Postives = 187/215 (86.98%), Query Frame = 1
Query: 1 MISEKTLTFPIKLLTGNESKDKITLTLKVKDGNETNNYVIHRAYLTQRLNERQGTASTLTRAEVRGGGRKPWRQKGMGRARAGSNRSPLWKGGGVSFGPKPKLYSNKINRKEWKLGLRSLLISKQNNIIIIDNLNITEYKTKNIIKILKIFNINLSEKTLFILPKIEENLLRSTNNIKTIKLTIASNLNLKQILLAKNLLVTKDSLKIIEDTYNG 645
MI +K LTFPIKLLTG ES DKITLTLK K+ + +NYVI RAYLTQR NERQGTA+TLTRAEV+GGGRKPWRQKG GRARAGSN SPLWKGGGVSFGPKPKLYSNKINRKEW+L LRSLLI+KQ +I +IDN+N EYKT NIIK L F+INL + TL I+PKIE+ LL+ST NIKTIK+ +A+NLNLKQILLAKNLLVTKDSLK IE+TYNG
Sbjct: 1 MILQKILTFPIKLLTGKESGDKITLTLKSKEITDKSNYVIQRAYLTQRYNERQGTANTLTRAEVKGGGRKPWRQKGTGRARAGSNTSPLWKGGGVSFGPKPKLYSNKINRKEWQLSLRSLLIAKQKDITVIDNINPLEYKTDNIIKTLNSFDINLFDNTLLIVPKIEDKLLKSTRNIKTIKVIVANNLNLKQILLAKNLLVTKDSLKTIEETYNG 215
BLAST of mRNA_F-distichus_contig101782.148.1 vs. uniprot
Match: A0A8F0FA21_9PHAE (Ribosomal protein L4 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0FA21_9PHAE) HSP 1 Score: 308 bits (790), Expect = 1.020e-102 Identity = 160/215 (74.42%), Postives = 188/215 (87.44%), Query Frame = 1
Query: 1 MISEKTLTFPIKLLTGNESKDKITLTLKVKDGNETNNYVIHRAYLTQRLNERQGTASTLTRAEVRGGGRKPWRQKGMGRARAGSNRSPLWKGGGVSFGPKPKLYSNKINRKEWKLGLRSLLISKQNNIIIIDNLNITEYKTKNIIKILKIFNINLSEKTLFILPKIEENLLRSTNNIKTIKLTIASNLNLKQILLAKNLLVTKDSLKIIEDTYNG 645
MI +K +TFPIK +TG ES DKITL LK+KD TNNYVI RAYLTQRLNERQGTA+TLTRAEV+GGGRKPW+QKG GRARAGSN SPLWKGGGVSFGPKPKLYSNKINRKEW+L LRSLL++K+ +I +++N N+ +YKT +IIKIL+ FNINL E TL I+PKIEE L++ST NIKTIK+ +A+NLNLKQILLA+NL +TKDSLK IE+TYNG
Sbjct: 1 MILQKLITFPIKSITGKESGDKITLNLKLKDVVTTNNYVIQRAYLTQRLNERQGTANTLTRAEVKGGGRKPWKQKGTGRARAGSNTSPLWKGGGVSFGPKPKLYSNKINRKEWQLSLRSLLVAKEKDITVLENFNLLDYKTNDIIKILQSFNINLFENTLIIVPKIEEKLIKSTKNIKTIKVLVANNLNLKQILLAQNLFITKDSLKTIEETYNG 215
BLAST of mRNA_F-distichus_contig101782.148.1 vs. uniprot
Match: A0A8F0FAT9_9PHAE (Ribosomal protein L4 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAT9_9PHAE) HSP 1 Score: 305 bits (782), Expect = 1.680e-101 Identity = 161/215 (74.88%), Postives = 185/215 (86.05%), Query Frame = 1
Query: 1 MISEKTLTFPIKLLTGNESKDKITLTLKVKDGNETNNYVIHRAYLTQRLNERQGTASTLTRAEVRGGGRKPWRQKGMGRARAGSNRSPLWKGGGVSFGPKPKLYSNKINRKEWKLGLRSLLISKQNNIIIIDNLNITEYKTKNIIKILKIFNINLSEKTLFILPKIEENLLRSTNNIKTIKLTIASNLNLKQILLAKNLLVTKDSLKIIEDTYNG 645
M EK LTFPIKLLTG ES D ITLTLK K+ + T+NY+IHRAYLTQ NERQG A+TLTR+EVRGGGRKPW+QKG GRARAGS SPLWKGGGVSFGPKPKLYSNKINRKEW+LGLR+LLI+KQ +I II+N + T YKT +IIK LK+FNI + EKTL I+PKI+E LL+ST NIKTIKL +A+NLN+KQILLAKNL +TKDSLK IE+TYNG
Sbjct: 1 MSLEKILTFPIKLLTGEESGDNITLTLKSKELSNTSNYIIHRAYLTQLYNERQGNANTLTRSEVRGGGRKPWKQKGTGRARAGSKSSPLWKGGGVSFGPKPKLYSNKINRKEWQLGLRNLLIAKQKDITIINNFSSTNYKTNDIIKALKVFNIKIFEKTLIIVPKIDEKLLKSTRNIKTIKLIVANNLNIKQILLAKNLFITKDSLKTIEETYNG 215
BLAST of mRNA_F-distichus_contig101782.148.1 vs. uniprot
Match: A0A1L2F1P9_9PHAE (Ribosomal protein L4 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1P9_9PHAE) HSP 1 Score: 289 bits (739), Expect = 5.270e-95 Identity = 158/215 (73.49%), Postives = 180/215 (83.72%), Query Frame = 1
Query: 1 MISEKTLTFPIKLLTGNESKDKITLTLKVKDGNETNNYVIHRAYLTQRLNERQGTASTLTRAEVRGGGRKPWRQKGMGRARAGSNRSPLWKGGGVSFGPKPKLYSNKINRKEWKLGLRSLLISKQNNIIIIDNLNITEYKTKNIIKILKIFNINLSEKTLFILPKIEENLLRSTNNIKTIKLTIASNLNLKQILLAKNLLVTKDSLKIIEDTYNG 645
MISEK LTF IK L G+ DKITL+LKVKD N TNNYVI RAYLTQR+NERQGTA+TLTRAEVRGGG K WRQKGMGRARAGSN SPLWKGGGVSFGPKPKLY NKINRKEWKLGLR+LLI+K+NNI +++N+ ITEYKTKNIIK+L+ F+I+L+E TL ILP I++ LL+STNNIKTIKLT+A+ L+ KDSLKIIEDTYNG
Sbjct: 1 MISEKILTFTIKSLKGDT--DKITLSLKVKDLNNTNNYVIQRAYLTQRINERQGTANTLTRAEVRGGGSKTWRQKGMGRARAGSNNSPLWKGGGVSFGPKPKLYLNKINRKEWKLGLRNLLIAKENNITVVENIRITEYKTKNIIKMLEGFSIDLAEDTLIILPMIQKELLQSTNNIKTIKLTLANXXXXXXXXXXXXXLIMKDSLKIIEDTYNG 213
BLAST of mRNA_F-distichus_contig101782.148.1 vs. uniprot
Match: A0A8F0JXJ6_9PHAE (Ribosomal protein L4 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JXJ6_9PHAE) HSP 1 Score: 282 bits (721), Expect = 3.470e-92 Identity = 148/218 (67.89%), Postives = 182/218 (83.49%), Query Frame = 1
Query: 1 MISEKTLTFPIKLLTGNESKDKITLTLKVKDGNETNNYVIHRAYLTQRLNERQGTASTLTRAEVRGGGRKPWRQKGMGRARAGSNRSPLWKGGGVSFGPKPKLYSNKINRKEWKLGLRSLLISKQNNIIIIDNLNITEYKTKNIIKILKIFNINLSEKTLFILPKIEENLLRSTNNIKTIKLTIASNLNLKQILLAKNLLVTKDSLKIIEDTYNG*NK 654
M+SEK LTFPIK LTG ES KI + LK+ + N T+NY+I RAYLTQR NERQGTA+TLTRAEVRGGGRKPWRQKG G+ARAGSN SPLW+ GGVSFGPKPK YSNKINRKEW+LGLR+LLI KQNNI+++++ N ++TK I + L+ F+I L E TLFI+ K+E++LL++T NIK IK+ +A+NLN+KQIL AKNL +T+ SLKIIE+TYNG NK
Sbjct: 1 MVSEKILTFPIKDLTGAESGKKIKVILKLTEQNNTSNYIIQRAYLTQRYNERQGTANTLTRAEVRGGGRKPWRQKGTGKARAGSNTSPLWRNGGVSFGPKPKEYSNKINRKEWQLGLRNLLIKKQNNIVVLNDFNFVNFRTKTIKQSLETFDIKLFENTLFIVSKLEKDLLKATCNIKNIKVLLANNLNIKQILFAKNLFITETSLKIIEETYNGPNK 218
BLAST of mRNA_F-distichus_contig101782.148.1 vs. uniprot
Match: A0A8E6D2Q2_9PHAE (50S ribosomal protein L4, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D2Q2_9PHAE) HSP 1 Score: 264 bits (675), Expect = 3.050e-85 Identity = 143/216 (66.20%), Postives = 174/216 (80.56%), Query Frame = 1
Query: 1 MISEKTLTFPIKLLTGNESKDKITLTLKVKDGNE-TNNYVIHRAYLTQRLNERQGTASTLTRAEVRGGGRKPWRQKGMGRARAGSNRSPLWKGGGVSFGPKPKLYSNKINRKEWKLGLRSLLISKQNNIIIIDNLNITEYKTKNIIKILKIFNINLSEKTLFILPKIEENLLRSTNNIKTIKLTIASNLNLKQILLAKNLLVTKDSLKIIEDTYNG 645
M SEKTL F +K L+G ESKD +TLK K NE T+NY+IHRA+LTQR NERQGTA+TLTR+EVRGGGRKPWRQKG GRARAGSN SPLWKGGGVSFGPKPK++SNKINRKE KL LRSLL +K+ NII+ +NLN T KT + K L I+L E L ++PKIE NL +S NI+TI++T+A+NLN++QIL+AK + + K+SL+IIEDTYNG
Sbjct: 1 MSSEKTLIFSVKDLSGEESKDTTAITLKSKKKNEATDNYLIHRAFLTQRHNERQGTANTLTRSEVRGGGRKPWRQKGTGRARAGSNTSPLWKGGGVSFGPKPKIFSNKINRKERKLALRSLLFAKRENIIVANNLNYTTCKTSLLKKNLDTLGIDLRENVLIVVPKIERNLFKSAQNIRTIRVTMANNLNIRQILIAKYIFIAKESLQIIEDTYNG 216
BLAST of mRNA_F-distichus_contig101782.148.1 vs. uniprot
Match: A0A7T8G5K9_SCYLO (50S ribosomal protein L4, chloroplastic n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8G5K9_SCYLO) HSP 1 Score: 259 bits (661), Expect = 1.470e-82 Identity = 137/213 (64.32%), Postives = 171/213 (80.28%), Query Frame = 1
Query: 10 EKTLTFPIKLLTGNESKDKITLTLKVKDGNETNNYVIHRAYLTQRLNERQGTASTLTRAEVRGGGRKPWRQKGMGRARAGSNRSPLWKGGGVSFGPKPKLYSNKINRKEWKLGLRSLLISKQNNIIIIDN-LNITEYKTKNIIKILKIFNINLSEKTLFILPKIEENLLRSTNNIKTIKLTIASNLNLKQILLAKNLLVTKDSLKIIEDTYNG 645
+K LTFPIK L G ++K+ TLTL+VK+ ET NY+I+RAY+ QR+NERQGT STLTRAEV+GGGRKPWRQKG GRARAGSNRSPLWKGGGVSFGPKPKLY+NK+NRKEW+L +RSL++ K+ I +ID+ N + KTK I + K NIN S+ FI+P+IEE+L ++T NIKT+KL A LNL IL + +LL++KDSLKIIE+TYNG
Sbjct: 44 DKVLTFPIKPLVGGDNKETATLTLQVKEKQETENYIIYRAYIAQRINERQGTVSTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKLYTNKLNRKEWQLAVRSLIMLKEPIINVIDHDFNSMDIKTKAFINLFKTCNINFSQNITFIVPRIEESLFKATRNIKTVKLMRADTLNLITILRSDHLLISKDSLKIIEETYNG 256 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101782.148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig101782.148.1 >prot_F-distichus_contig101782.148.1 ID=prot_F-distichus_contig101782.148.1|Name=mRNA_F-distichus_contig101782.148.1|organism=Fucus distichus monoicous|type=polypeptide|length=216bp MISEKTLTFPIKLLTGNESKDKITLTLKVKDGNETNNYVIHRAYLTQRLNback to top mRNA from alignment at F-distichus_contig101782:477..1419- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig101782.148.1 ID=mRNA_F-distichus_contig101782.148.1|Name=mRNA_F-distichus_contig101782.148.1|organism=Fucus distichus monoicous|type=mRNA|length=943bp|location=Sequence derived from alignment at F-distichus_contig101782:477..1419- (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig101782:477..1419- >mRNA_F-distichus_contig101782.148.1 ID=mRNA_F-distichus_contig101782.148.1|Name=mRNA_F-distichus_contig101782.148.1|organism=Fucus distichus monoicous|type=CDS|length=1296bp|location=Sequence derived from alignment at F-distichus_contig101782:477..1419- (Fucus distichus monoicous)back to top |