mRNA_F-distichus_contig101677.138.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig101677.138.1
Unique NamemRNA_F-distichus_contig101677.138.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig101677.138.1 vs. uniprot
Match: D7G001_ECTSI (Coiled-coil flagellar protein, move backward only 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G001_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 2.710e-26
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    4 PSNQIRTTAEPRPNAYIPDELGIPKPYGGMGPFKPSESGSTMRHIRAPKPREIEI 168
            P + +RT AEPRPNAYIPDELGIPKPYGG GPFKP+E G+TMRHIR PKPREIEI
Sbjct:  169 PPSMVRTMAEPRPNAYIPDELGIPKPYGGQGPFKPTEGGTTMRHIRMPKPREIEI 223
[Close]
BLAST of mRNA_F-distichus_contig101677.138.1 vs. uniprot
Match: A0A7S2DKZ3_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DKZ3_9EUKA)

HSP 1 Score: 94.4 bits (233), Expect = 2.070e-22
Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 APSNQIRTTAEPRPNAYIPDELGIPKPYGGMGPFKPSESGSTMRHIRAPKPREIEI 168
            AP+    TTAEPRPNAYIPD++GIPKPYG + PFKP+E G+TMRHIR P+PREIE+
Sbjct:  184 APAQISHTTAEPRPNAYIPDDIGIPKPYGALAPFKPTELGATMRHIRKPQPREIEL 239
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BLAST of mRNA_F-distichus_contig101677.138.1 vs. uniprot
Match: A0A7S2UV02_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV02_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.180e-21
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    4 PSNQIRTTAEPRPNAYIPDE-LGIPKPYGGMGPFKPSESGSTMRHIRAPKPREIEI 168
            P    RTTAEPRPNAYIPD+ LG+PKPYG + PFKP+E+GSTMRHIR P P++IEI
Sbjct:   80 PDQVNRTTAEPRPNAYIPDDALGLPKPYGKLAPFKPTETGSTMRHIRVPNPKDIEI 135
[Close]
BLAST of mRNA_F-distichus_contig101677.138.1 vs. uniprot
Match: A0A7S3AK31_9EUKA (Hypothetical protein n=2 Tax=Prymnesiaceae TaxID=418967 RepID=A0A7S3AK31_9EUKA)

HSP 1 Score: 95.1 bits (235), Expect = 1.890e-21
Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 APSNQIRTTAEPRPNAYIPDELGIPKPYGGMGPFKPSESGSTMRHIRAPKPREIEI 168
            AP+    TTAEPRPNAYIPD++GIPKPYG + PFKP+E G+TMRHIR P+PREIE+
Sbjct:  653 APTQLTHTTAEPRPNAYIPDDIGIPKPYGALAPFKPTELGTTMRHIRRPQPREIEL 708
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BLAST of mRNA_F-distichus_contig101677.138.1 vs. uniprot
Match: A0A0M0K1I6_9EUKA (Coiled coil flagellar protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K1I6_9EUKA)

HSP 1 Score: 94.7 bits (234), Expect = 2.590e-21
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 APSNQIRTTAEPRPNAYIPDELGIPKPYGGMGPFKPSESGSTMRHIRAPKPREIEI 168
            AP+    TTAEPRPNAYIPD++GIPKPYG + PFKP+E G+TMRHIR P PREIE+
Sbjct:  832 APAQLTHTTAEPRPNAYIPDDIGIPKPYGALAPFKPTELGTTMRHIRKPNPREIEL 887
[Close]
BLAST of mRNA_F-distichus_contig101677.138.1 vs. uniprot
Match: A0A2D4CGI1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CGI1_PYTIN)

HSP 1 Score: 90.9 bits (224), Expect = 2.850e-21
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    4 PSNQIRTTAEPRPNAYIPDELGIPKPYGGMGPFKPSESGSTMRHIRAPKPREIEI 168
            PS    TTAEPRPNAYIP++LGIPKPYG + PFKP+++GSTMRHIR P+ R+IEI
Sbjct:  162 PSQLTFTTAEPRPNAYIPEDLGIPKPYGSLAPFKPTQAGSTMRHIRVPQKRDIEI 216
[Close]
BLAST of mRNA_F-distichus_contig101677.138.1 vs. uniprot
Match: A0A067CNG4_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CNG4_SAPPC)

HSP 1 Score: 94.4 bits (233), Expect = 3.530e-21
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    4 PSNQIRTTAEPRPNAYIPDELGIPKPYGGMGPFKPSESGSTMRHIRAPKPREIEI 168
            PS   RTTAEPRPNAY+PDELGIPKPYGG  PFKP+ +GSTMRHIR P+ R+IEI
Sbjct:  836 PSQITRTTAEPRPNAYVPDELGIPKPYGGAAPFKPTLTGSTMRHIRPPQRRDIEI 890
[Close]
BLAST of mRNA_F-distichus_contig101677.138.1 vs. uniprot
Match: A0A1V9Z3F5_9STRA (MBO2, coiled coil flagellar protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z3F5_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 4.820e-21
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 APSNQIRTTAEPRPNAYIPDELGIPKPYGGMGPFKPSESGSTMRHIRAPKPREIEI 168
            APS   RTTAEPRPNAY+PDELGIPKPYG   PFKP+ +GSTMRHIR P+ R+IEI
Sbjct:  872 APSQVTRTTAEPRPNAYVPDELGIPKPYGSAAPFKPTLTGSTMRHIRPPQRRDIEI 927
[Close]
BLAST of mRNA_F-distichus_contig101677.138.1 vs. uniprot
Match: A0A1V9Z2P3_9STRA (MBO2, coiled coil flagellar protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z2P3_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.680e-20
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    4 PSNQIRTTAEPRPNAYIPDELGIPKPYGGMGPFKPSESGSTMRHIRAPKPREIEI 168
            P+   RTTAEPRPNAY+PDELGIPKPYG + PFKP+ +GSTMRHIR P+ R+IEI
Sbjct:  869 PTQITRTTAEPRPNAYVPDELGIPKPYGSLAPFKPTMTGSTMRHIRQPQRRDIEI 923
[Close]
BLAST of mRNA_F-distichus_contig101677.138.1 vs. uniprot
Match: A0A836CM07_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM07_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.120e-20
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 APSNQIRTTAEPRPNAYIPDELGIPKPYGGMGPFKPSESGSTMRHIRAPKPREIEI 168
            A  N +RTTA  RPNAYIPDE+GIPKPYGG+ PF+P E GSTMRH+R P+P +IEI
Sbjct:  684 AAPNAVRTTAPQRPNAYIPDEIGIPKPYGGLAPFRPQEPGSTMRHMRLPRPPQIEI 739
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101677.138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G001_ECTSI2.710e-2681.82Coiled-coil flagellar protein, move backward only ... [more]
A0A7S2DKZ3_9EUKA2.070e-2271.43Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S2UV02_9STRA1.180e-2171.43Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3AK31_9EUKA1.890e-2171.43Hypothetical protein n=2 Tax=Prymnesiaceae TaxID=4... [more]
A0A0M0K1I6_9EUKA2.590e-2171.43Coiled coil flagellar protein n=1 Tax=Chrysochromu... [more]
A0A2D4CGI1_PYTIN2.850e-2170.91Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A067CNG4_SAPPC3.530e-2176.36Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9Z3F5_9STRA4.820e-2175.00MBO2, coiled coil flagellar protein n=1 Tax=Achlya... [more]
A0A1V9Z2P3_9STRA1.680e-2072.73MBO2, coiled coil flagellar protein n=1 Tax=Thraus... [more]
A0A836CM07_9STRA3.120e-2069.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101677contigF-distichus_contig101677:1565..1735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue1.9e-17
Seed eggNOG ortholog112098.XP_008611610.1
Preferred nameCCDC146
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005814,GO:0005815,GO:0005856,GO:0015630,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464
EggNOG OGs28H8C@1,2QPM4@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size171
Cds size171
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928932.3957522-CDS-F-distichus_contig101677:1564..17351622928932.3957522-CDS-F-distichus_contig101677:1564..1735Fucus distichus monoicousCDSF-distichus_contig101677 1565..1735 +
1690885072.0820043-CDS-F-distichus_contig101677:1564..17351690885072.0820043-CDS-F-distichus_contig101677:1564..1735Fucus distichus monoicousCDSF-distichus_contig101677 1565..1735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101677.138.1prot_F-distichus_contig101677.138.1Fucus distichus monoicouspolypeptideF-distichus_contig101677 1565..1735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig101677.138.1

>prot_F-distichus_contig101677.138.1 ID=prot_F-distichus_contig101677.138.1|Name=mRNA_F-distichus_contig101677.138.1|organism=Fucus distichus monoicous|type=polypeptide|length=57bp
APSNQIRTTAEPRPNAYIPDELGIPKPYGGMGPFKPSESGSTMRHIRAPK
PREIEI*
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mRNA from alignment at F-distichus_contig101677:1565..1735+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig101677.138.1 ID=mRNA_F-distichus_contig101677.138.1|Name=mRNA_F-distichus_contig101677.138.1|organism=Fucus distichus monoicous|type=mRNA|length=171bp|location=Sequence derived from alignment at F-distichus_contig101677:1565..1735+ (Fucus distichus monoicous)
GCGCCCTCCAATCAGATTCGAACGACGGCGGAGCCGAGGCCGAACGCGTA
CATACCGGACGAGCTGGGGATACCCAAGCCCTACGGGGGGATGGGACCAT
TCAAGCCGTCTGAAAGCGGGTCCACTATGCGTCACATACGCGCGCCGAAG
CCCAGGGAGATCGAGATTTAA
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Coding sequence (CDS) from alignment at F-distichus_contig101677:1565..1735+

>mRNA_F-distichus_contig101677.138.1 ID=mRNA_F-distichus_contig101677.138.1|Name=mRNA_F-distichus_contig101677.138.1|organism=Fucus distichus monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at F-distichus_contig101677:1565..1735+ (Fucus distichus monoicous)
GCGCCCTCCAATCAGATTCGAACGACGGCGGAGCCGAGGCCGAACGCGTA
CATACCGGACGAGCTGGGGATACCCAAGCCCTACGGGGGGATGGGACCAT
TCAAGCCGTCTGAAAGCGGGTCCACTATGCGTCACATACGCGCGCCGAAG
CCCAGGGAGATCGAGATTTAAGCGCCCTCCAATCAGATTCGAACGACGGC
GGAGCCGAGGCCGAACGCGTACATACCGGACGAGCTGGGGATACCCAAGC
CCTACGGGGGGATGGGACCATTCAAGCCGTCTGAAAGCGGGTCCACTATG
CGTCACATACGCGCGCCGAAGCCCAGGGAGATCGAGATTTAA
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