mRNA_F-distichus_contig101651.137.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig101651.137.1
Unique NamemRNA_F-distichus_contig101651.137.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig101651.137.1 vs. uniprot
Match: D7FUT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUT6_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.420e-16
Identity = 34/50 (68.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 QLSPEMYDYNQWGDLYYEVFLQFVEEVLDKWRELEVAHSLTVVFFCRSFF 150
            QL+PEMYD NQ GD+YYEVFL+FVE+++++WRE++V H LTVVFFCR +F
Sbjct:  180 QLTPEMYDTNQHGDVYYEVFLRFVEDLVERWREMDVTHHLTVVFFCRVYF 229
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BLAST of mRNA_F-distichus_contig101651.137.1 vs. uniprot
Match: A0A6H5L3G7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3G7_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 4.930e-16
Identity = 33/50 (66.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 QLSPEMYDYNQWGDLYYEVFLQFVEEVLDKWRELEVAHSLTVVFFCRSFF 150
            QL+PEMY+ NQ GD+YYEVFL+FVE+++++WRE++V H LTVVFFCR +F
Sbjct:   95 QLTPEMYETNQHGDVYYEVFLRFVEDLVERWREMDVTHHLTVVFFCRVYF 144
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BLAST of mRNA_F-distichus_contig101651.137.1 vs. uniprot
Match: A0A8K1FJ31_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJ31_PYTOL)

HSP 1 Score: 61.6 bits (148), Expect = 8.550e-10
Identity = 26/50 (52.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 QLSPEMYDYNQWGDLYYEVFLQFVEEVLDKWRELEVAHSLTVVFFCRSFF 150
            QLSPEM++    G LY E+FLQ V+ +LDKW + + +HSLT++FF RS++
Sbjct:  252 QLSPEMWEMANSGKLYLEIFLQVVQNILDKWTKHKASHSLTIIFFARSYY 301
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BLAST of mRNA_F-distichus_contig101651.137.1 vs. uniprot
Match: K3W9W3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W9W3_GLOUD)

HSP 1 Score: 61.2 bits (147), Expect = 1.170e-9
Identity = 27/50 (54.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 QLSPEMYDYNQWGDLYYEVFLQFVEEVLDKWRELEVAHSLTVVFFCRSFF 150
            QLSPEM+D    G LY E+FL  VE VL+KW + +V+HSLT++FF R+++
Sbjct:  274 QLSPEMWDIANSGKLYMEIFLNVVENVLNKWMKHKVSHSLTIIFFARNYY 323
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BLAST of mRNA_F-distichus_contig101651.137.1 vs. uniprot
Match: A0A5D6YDX6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDX6_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.180e-9
Identity = 26/50 (52.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 QLSPEMYDYNQWGDLYYEVFLQFVEEVLDKWRELEVAHSLTVVFFCRSFF 150
            QL+PEM+D    G LY E+FL+ V+ VL+KW + +V+HSLT++FF RS++
Sbjct:  289 QLTPEMWDMANSGKLYLEIFLRVVQSVLNKWMKHKVSHSLTIIFFARSYY 338
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BLAST of mRNA_F-distichus_contig101651.137.1 vs. uniprot
Match: A0A662WDL1_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WDL1_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 6.820e-8
Identity = 24/50 (48.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 QLSPEMYDYNQWGDLYYEVFLQFVEEVLDKWRELEVAHSLTVVFFCRSFF 150
            Q+SPEM+D    G LY E+FL  V+ VL+KW + +V+HSLT++F+ R ++
Sbjct:  260 QISPEMWDMANSGKLYLEIFLNVVQNVLNKWTKHKVSHSLTILFYSRCYY 309
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BLAST of mRNA_F-distichus_contig101651.137.1 vs. uniprot
Match: A0A067BX44_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BX44_SAPPC)

HSP 1 Score: 53.9 bits (128), Expect = 4.460e-7
Identity = 23/50 (46.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    1 QLSPEMYDYNQWGDLYYEVFLQFVEEVLDKWRELEVAHSLTVVFFCRSFF 150
            Q+SPEM+D    GDLY E  L+    +  KW+ + V+HSLT++FF R+F+
Sbjct:  218 QVSPEMWDMANDGDLYAEELLRIAHVLFTKWQSMHVSHSLTIIFFARTFY 267
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BLAST of mRNA_F-distichus_contig101651.137.1 vs. uniprot
Match: T0QQF1_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QQF1_SAPDV)

HSP 1 Score: 53.9 bits (128), Expect = 4.470e-7
Identity = 23/50 (46.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    1 QLSPEMYDYNQWGDLYYEVFLQFVEEVLDKWRELEVAHSLTVVFFCRSFF 150
            Q+SPEM+D    GDLY E  L+    +  KW+ + V+HSLT++FF R+F+
Sbjct:  226 QVSPEMWDMANDGDLYAEELLRIASVLFTKWQSMHVSHSLTIIFFARTFY 275
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BLAST of mRNA_F-distichus_contig101651.137.1 vs. uniprot
Match: A0A2D4BS34_PYTIN (26S protease regulatory subunit 6B n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BS34_PYTIN)

HSP 1 Score: 53.5 bits (127), Expect = 6.130e-7
Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 QLSPEMYDYNQWGDLYYEVFLQFVEEVLDKWRELEVAHSLTVVFFCRSFF 150
            Q+SPEM+D    G LY E+ LQ V+ VL KW + +V+HSLT++ F R ++
Sbjct:  832 QMSPEMWDMANSGQLYLEILLQVVQNVLHKWIKHKVSHSLTIMLFSRCYY 881
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BLAST of mRNA_F-distichus_contig101651.137.1 vs. uniprot
Match: A0A7S2WMW8_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WMW8_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.570e-6
Identity = 25/51 (49.02%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 QLSPEMYDYNQWGDLYYEVFL-QFVEEVLDKWRELEVAHSLTVVFFCRSFF 150
            QLS EM+++++ GDLY+E FL +F  +V +KW    V H LTVV+F R++F
Sbjct:  286 QLSKEMWNFSEDGDLYFERFLNRFATQVFEKWTSKGVTHRLTVVYFSRTYF 336
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101651.137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUT6_ECTSI1.420e-1668.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3G7_9PHAE4.930e-1666.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8K1FJ31_PYTOL8.550e-1052.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3W9W3_GLOUD1.170e-954.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6YDX6_9STRA2.180e-952.00Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A662WDL1_9STRA6.820e-848.00Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]
A0A067BX44_SAPPC4.460e-746.00Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
T0QQF1_SAPDV4.470e-746.00Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A2D4BS34_PYTIN6.130e-748.0026S protease regulatory subunit 6B n=2 Tax=Pythium... [more]
A0A7S2WMW8_9STRA1.570e-649.02Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101651contigF-distichus_contig101651:439..588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue3.6e-11
Seed eggNOG ortholog2880.D7FUT6
Preferred nameIML1
KEGG koko:K20404
KEGG Pathwayko04150,map04150
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000306,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006950,GO:0006995,GO:0007154,GO:0008047,GO:0008150,GO:0009267,GO:0009605,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010506,GO:0010508,GO:0010646,GO:0010648,GO:0016020,GO:0016241,GO:0019222,GO:0019898,GO:0023051,GO:0023057,GO:0030234,GO:0030695,GO:0031090,GO:0031312,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031667,GO:0031668,GO:0031669,GO:0032006,GO:0032007,GO:0032991,GO:0033043,GO:0033554,GO:0034198,GO:0035859,GO:0042594,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0043562,GO:0044087,GO:0044088,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051056,GO:0051058,GO:0051128,GO:0051336,GO:0051345,GO:0051716,GO:0060589,GO:0065007,GO:0065009,GO:0071496,GO:0097042,GO:0098588,GO:0098772,GO:0098805,GO:0098852,GO:1902115,GO:1902531,GO:1902532,GO:1903432,GO:1904262,GO:1990130,GO:1990928,GO:2000785
EggNOG free text desc.negative regulation of TOR signaling
EggNOG OGsKOG3572@1,KOG3572@2759
Ec32 ortholog descriptionVacuolar membrane-associated protein Iml1
Ec32 orthologEc-06_001040.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size150
Cds size135
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928932.3458316-CDS-F-distichus_contig101651:438..5731622928932.3458316-CDS-F-distichus_contig101651:438..573Fucus distichus monoicousCDSF-distichus_contig101651 439..573 -
1690885072.0566669-CDS-F-distichus_contig101651:438..5731690885072.0566669-CDS-F-distichus_contig101651:438..573Fucus distichus monoicousCDSF-distichus_contig101651 439..573 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928932.3575072-UTR-F-distichus_contig101651:573..5881622928932.3575072-UTR-F-distichus_contig101651:573..588Fucus distichus monoicousUTRF-distichus_contig101651 574..588 -
1690885072.0726073-UTR-F-distichus_contig101651:573..5881690885072.0726073-UTR-F-distichus_contig101651:573..588Fucus distichus monoicousUTRF-distichus_contig101651 574..588 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101651.137.1prot_F-distichus_contig101651.137.1Fucus distichus monoicouspolypeptideF-distichus_contig101651 439..573 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig101651.137.1

>prot_F-distichus_contig101651.137.1 ID=prot_F-distichus_contig101651.137.1|Name=mRNA_F-distichus_contig101651.137.1|organism=Fucus distichus monoicous|type=polypeptide|length=45bp
MYDYNQWGDLYYEVFLQFVEEVLDKWRELEVAHSLTVVFFCRSFF
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mRNA from alignment at F-distichus_contig101651:439..588-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig101651.137.1 ID=mRNA_F-distichus_contig101651.137.1|Name=mRNA_F-distichus_contig101651.137.1|organism=Fucus distichus monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at F-distichus_contig101651:439..588- (Fucus distichus monoicous)
CAGCTGTCCCCCGAAATGTACGACTACAACCAATGGGGGGACCTCTACTA
CGAGGTGTTCTTACAGTTCGTCGAGGAGGTGCTCGACAAGTGGAGGGAGC
TTGAAGTGGCGCACTCTCTGACCGTTGTGTTCTTCTGCCGATCGTTCTTC
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Coding sequence (CDS) from alignment at F-distichus_contig101651:439..588-

>mRNA_F-distichus_contig101651.137.1 ID=mRNA_F-distichus_contig101651.137.1|Name=mRNA_F-distichus_contig101651.137.1|organism=Fucus distichus monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at F-distichus_contig101651:439..588- (Fucus distichus monoicous)
ATGTACGACTACAACCAATGGGGGGACCTCTACTACGAGGTGTTCTTACA
GTTCGTCGAGGAGGTGCTCGACAAGTGGAGGGAGCTTGAAGTGGCGCACT
CTCTGACCGTTGTGTTCTTCTGCCGATCGTTCTTCATGTACGACTACAAC
CAATGGGGGGACCTCTACTACGAGGTGTTCTTACAGTTCGTCGAGGAGGT
GCTCGACAAGTGGAGGGAGCTTGAAGTGGCGCACTCTCTGACCGTTGTGT
TCTTCTGCCGATCGTTCTTC
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