mRNA_F-distichus_contig101454.115.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig101454.115.1
Unique NamemRNA_F-distichus_contig101454.115.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig101454.115.1 vs. uniprot
Match: A0A6H5JB60_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB60_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 4.040e-46
Identity = 74/89 (83.15%), Postives = 83/89 (93.26%), Query Frame = 1 
Query:   13 DGERCSICLDPWTSKGKHRICTLHCGHLFGKACIERWLEERRSCPQCGAKVGSKGSHRVIPLFLSNLTAKDTGELETAMMRLDEEKRLR 279
            DGERCSICLDPWTSKGKHRICTL CGHLFG++CIERWL+ERRSCPQCGAKVG+KG++R+IPLFL NL A+DTGELETA   L+EEKRLR
Sbjct:  116 DGERCSICLDPWTSKGKHRICTLLCGHLFGQSCIERWLKERRSCPQCGAKVGAKGTNRIIPLFLQNLVAQDTGELETARTLLEEEKRLR 204
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BLAST of mRNA_F-distichus_contig101454.115.1 vs. uniprot
Match: D8LKW0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW0_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 8.230e-46
Identity = 73/89 (82.02%), Postives = 82/89 (92.13%), Query Frame = 1 
Query:   13 DGERCSICLDPWTSKGKHRICTLHCGHLFGKACIERWLEERRSCPQCGAKVGSKGSHRVIPLFLSNLTAKDTGELETAMMRLDEEKRLR 279
            DGERCSICLDPWTSKGKHRICTL CGHLFG++CIERWL+ERRSCPQCG KVG+KG++R+IPLFL NL A+DTGELETA   L+EEKRLR
Sbjct:   41 DGERCSICLDPWTSKGKHRICTLLCGHLFGQSCIERWLKERRSCPQCGTKVGAKGTNRIIPLFLHNLVAQDTGELETARTLLEEEKRLR 129
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BLAST of mRNA_F-distichus_contig101454.115.1 vs. uniprot
Match: A0A267GDQ9_9PLAT (RING-type domain-containing protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267GDQ9_9PLAT)

HSP 1 Score: 108 bits (270), Expect = 3.980e-26
Identity = 47/91 (51.65%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    1 PLPQDGERCSICLDPWTSKGKHRICTLHCGHLFGKACIERWLEERRSCPQCGAKVGSKGSHRVIPLFLSNLTAKDTGELETAMMRLDEEKR 273
            P P D E C+IC +PWTS G+HR+C L CGHLFGK+C+ERWLE R+ CPQC         H V+PL+++NL A D  E E   + +D+ KR
Sbjct:  240 PQPAD-EGCTICFEPWTSSGEHRVCALRCGHLFGKSCVERWLETRQQCPQCNRNCRR---HEVLPLYVTNLRAVDNSENEALKLEIDKIKR 326
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BLAST of mRNA_F-distichus_contig101454.115.1 vs. uniprot
Match: A0A1I8IIU3_9PLAT (RING-type domain-containing protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8IIU3_9PLAT)

HSP 1 Score: 108 bits (270), Expect = 1.180e-25
Identity = 47/91 (51.65%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    1 PLPQDGERCSICLDPWTSKGKHRICTLHCGHLFGKACIERWLEERRSCPQCGAKVGSKGSHRVIPLFLSNLTAKDTGELETAMMRLDEEKR 273
            P P D E C+IC +PWTS G+HR+C L CGHLFGK+C+ERWLE R+ CPQC         H V+PL+++NL A D  E E   + +D+ KR
Sbjct:  240 PQPAD-EGCTICFEPWTSSGEHRVCALRCGHLFGKSCVERWLETRQQCPQCNRNCRR---HEVLPLYVTNLRAVDNSENEALKLEIDKIKR 326
[Close]
BLAST of mRNA_F-distichus_contig101454.115.1 vs. uniprot
Match: A0A267DN52_9PLAT (RING-type domain-containing protein n=4 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267DN52_9PLAT)

HSP 1 Score: 108 bits (270), Expect = 1.570e-25
Identity = 47/91 (51.65%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    1 PLPQDGERCSICLDPWTSKGKHRICTLHCGHLFGKACIERWLEERRSCPQCGAKVGSKGSHRVIPLFLSNLTAKDTGELETAMMRLDEEKR 273
            P P D E C+IC +PWTS G+HR+C L CGHLFGK+C+ERWLE R+ CPQC         H V+PL+++NL A D  E E   + +D+ KR
Sbjct:  240 PQPAD-EGCTICFEPWTSSGEHRVCALRCGHLFGKSCVERWLETRQQCPQCNRNCRR---HEVLPLYVTNLRAVDNSENEALKLEIDKIKR 326
[Close]
BLAST of mRNA_F-distichus_contig101454.115.1 vs. uniprot
Match: A0A8C4NA14_EPTBU (Ring finger and WD repeat domain 3 n=2 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4NA14_EPTBU)

HSP 1 Score: 94.4 bits (233), Expect = 1.540e-20
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:   10 QDGERCSICLDPWTSKGKHRICTLHCGHLFGKACIERWLEERRSCPQCGAKVGSKGSHRVIPLFLSNLTAKDTGELETAMMRLDEEKRLR 279
            ++ + CSICL+PWT+ G HR+C L CGH+FG AC+ RW    + CPQC  +        V P+++S L A DT ELE+    L++E+ LR
Sbjct:  133 EESDICSICLEPWTNVGPHRMCNLRCGHVFGHACVMRWFTTSKKCPQCNQRAKKSD---VRPVYVSTLRAIDTVELESLKRELEQERELR 219
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BLAST of mRNA_F-distichus_contig101454.115.1 vs. uniprot
Match: A0A3M7Q7N5_BRAPC (E3 ubiquitin-ligase RFWD3 n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7Q7N5_BRAPC)

HSP 1 Score: 91.7 bits (226), Expect = 1.340e-19
Identity = 42/87 (48.28%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:   19 ERCSICLDPWTSKGKHRICTLHCGHLFGKACIERWLEERRSCPQCGAKVGSKGSHRVIPLFLSNLTAKDTGELETAMMRLDEEKRLR 279
            E CSICL+PWT+ G HR+  L CGHLFG+ACIERWL+    CPQC  +       R+   +  +L   DT EL+ A+  L+ EK+LR
Sbjct:   99 ETCSICLEPWTNSGAHRLVCLKCGHLFGEACIERWLKTVPKCPQCNRQSKRTDIRRI---YAKSLKVIDTAELDKALKDLENEKQLR 182
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BLAST of mRNA_F-distichus_contig101454.115.1 vs. uniprot
Match: L8GV33_ACACA (Zinc finger, C3HC4 type (RING finger) domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GV33_ACACA)

HSP 1 Score: 90.1 bits (222), Expect = 4.760e-19
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:    4 LPQDGERCSICLDPWTSKGKHRICTLHCGHLFGKACIERWLEERRSCPQCGAKVGSKGSHRVIPLFLSNLTAKDTGE 234
            LP+   +C+ICLD W S G H+IC+L CGHLFG++CIE+WL   + CP C AK   + SH + PLF+ +L   D  E
Sbjct:   30 LPESASQCTICLDSWQSSGPHKICSLKCGHLFGRSCIEKWLRNNKLCPMCKAKA--QRSH-IRPLFVQHLIVVDNTE 103
[Close]
BLAST of mRNA_F-distichus_contig101454.115.1 vs. uniprot
Match: A0A5A9PPE2_9TELE (E3 ubiquitin-protein ligase RFWD3 n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9PPE2_9TELE)

HSP 1 Score: 90.1 bits (222), Expect = 4.780e-19
Identity = 43/90 (47.78%), Postives = 53/90 (58.89%), Query Frame = 1 
Query:   10 QDGERCSICLDPWTSKGKHRICTLHCGHLFGKACIERWLEERRSCPQCGAKVGSKGSHRVIPLFLSNLTAKDTGELETAMMRLDEEKRLR 279
            ++GE CSIC +PWT+ G HR+  L CGHLFG  CI+RWL E   CPQC  K   K  H +I L+   L A D  E       L+ E+RLR
Sbjct:  177 EEGETCSICFEPWTTAGNHRLAALRCGHLFGHECIKRWLVEGNKCPQCNKKA--KRDH-IIFLYARRLKALDNTESVQLKKSLENEQRLR 263
[Close]
BLAST of mRNA_F-distichus_contig101454.115.1 vs. uniprot
Match: A0A813Y3E3_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813Y3E3_9BILA)

HSP 1 Score: 89.7 bits (221), Expect = 6.370e-19
Identity = 41/89 (46.07%), Postives = 54/89 (60.67%), Query Frame = 1 
Query:   13 DGERCSICLDPWTSKGKHRICTLHCGHLFGKACIERWLEERRSCPQCGAKVGSKGSHRVIPLFLSNLTAKDTGELETAMMRLDEEKRLR 279
            D E CSICL+PWT+ G HR+  L CGHLFG+ CIERWL+    CPQC          R+   +   L   DT EL+ A+  L++E++LR
Sbjct:   91 DEETCSICLEPWTNSGIHRLVCLKCGHLFGEGCIERWLKTNPKCPQCNRPSKRSDIRRI---YARALKVIDTAELDKALKDLEDERQLR 176
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101454.115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JB60_9PHAE4.040e-4683.15RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LKW0_ECTSI8.230e-4682.02RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A267GDQ9_9PLAT3.980e-2651.65RING-type domain-containing protein n=1 Tax=Macros... [more]
A0A1I8IIU3_9PLAT1.180e-2551.65RING-type domain-containing protein n=1 Tax=Macros... [more]
A0A267DN52_9PLAT1.570e-2551.65RING-type domain-containing protein n=4 Tax=Macros... [more]
A0A8C4NA14_EPTBU1.540e-2044.44Ring finger and WD repeat domain 3 n=2 Tax=Eptatre... [more]
A0A3M7Q7N5_BRAPC1.340e-1948.28E3 ubiquitin-ligase RFWD3 n=1 Tax=Brachionus plica... [more]
L8GV33_ACACA4.760e-1949.35Zinc finger, C3HC4 type (RING finger) domain conta... [more]
A0A5A9PPE2_9TELE4.780e-1947.78E3 ubiquitin-protein ligase RFWD3 n=1 Tax=Triploph... [more]
A0A813Y3E3_9BILA6.370e-1946.07Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101454contigF-distichus_contig101454:289..1158 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.3
Seed ortholog evalue5.4e-38
Seed eggNOG ortholog2880.D8LKW0
KEGG koko:K15691
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000278,GO:0000724,GO:0000725,GO:0002039,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006302,GO:0006310,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0007093,GO:0007346,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0010564,GO:0010948,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0022402,GO:0031297,GO:0031570,GO:0031571,GO:0031974,GO:0031981,GO:0032446,GO:0033554,GO:0034641,GO:0034645,GO:0036211,GO:0036297,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045005,GO:0045786,GO:0045930,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051726,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0080134,GO:0080135,GO:0090304,GO:0090734,GO:0097371,GO:0140096,GO:1901360,GO:1901564,GO:1901576,GO:1901976,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902806,GO:1902807,GO:1903047,GO:2000001,GO:2000045,GO:2000134,GO:2001020
EggNOG free text desc.MDM2/MDM4 family protein binding
EggNOG OGsKOG1645@1,KOG1645@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons3
Model size279
Cds size279
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101454.115.1prot_F-distichus_contig101454.115.1Fucus distichus monoicouspolypeptideF-distichus_contig101454 289..1158 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928930.3312533-CDS-F-distichus_contig101454:288..4381622928930.3312533-CDS-F-distichus_contig101454:288..438Fucus distichus monoicousCDSF-distichus_contig101454 289..438 -
1690885071.0883932-CDS-F-distichus_contig101454:288..4381690885071.0883932-CDS-F-distichus_contig101454:288..438Fucus distichus monoicousCDSF-distichus_contig101454 289..438 -
1622928930.350979-CDS-F-distichus_contig101454:806..8671622928930.350979-CDS-F-distichus_contig101454:806..867Fucus distichus monoicousCDSF-distichus_contig101454 807..867 -
1690885071.1018677-CDS-F-distichus_contig101454:806..8671690885071.1018677-CDS-F-distichus_contig101454:806..867Fucus distichus monoicousCDSF-distichus_contig101454 807..867 -
1622928930.3678176-CDS-F-distichus_contig101454:1090..11581622928930.3678176-CDS-F-distichus_contig101454:1090..1158Fucus distichus monoicousCDSF-distichus_contig101454 1091..1158 -
1690885071.1142945-CDS-F-distichus_contig101454:1090..11581690885071.1142945-CDS-F-distichus_contig101454:1090..1158Fucus distichus monoicousCDSF-distichus_contig101454 1091..1158 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig101454.115.1

>prot_F-distichus_contig101454.115.1 ID=prot_F-distichus_contig101454.115.1|Name=mRNA_F-distichus_contig101454.115.1|organism=Fucus distichus monoicous|type=polypeptide|length=93bp
PLPQDGERCSICLDPWTSKGKHRICTLHCGHLFGKACIERWLEERRSCPQ
CGAKVGSKGSHRVIPLFLSNLTAKDTGELETAMMRLDEEKRLR
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mRNA from alignment at F-distichus_contig101454:289..1158-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig101454.115.1 ID=mRNA_F-distichus_contig101454.115.1|Name=mRNA_F-distichus_contig101454.115.1|organism=Fucus distichus monoicous|type=mRNA|length=870bp|location=Sequence derived from alignment at F-distichus_contig101454:289..1158- (Fucus distichus monoicous)
CCCTTACCGCAGGACGGGGAACGGTGCAGTATCTGCCTGGACCCATGGAC
CTCCAAAGGCAAACATAGGTAGCTCTACAGTACTTTTACAGTGCAGTAAA
GTCATATGATTTTCTAGGAAACCTATGAGCCCGCCGGGCGCCACGTTACA
CACGAGCGTGCGACCGGCGCTAGGCGCGATGAACTGCATTAGCTACTCTA
ACCCAATGTACTATTTTTTAGCAGCCCAATGACGAAACCAATGCCTCAAA
ACGGTTTTGAATGACATCGTGTGACACGCGTTTTCCCTCAGGATATGCAC
CCTTCACTGCGGGCACTTGTTCGGGAAGGCGTGCATAGAGAGATGGTTGG
AGGTGAGCCCATGTAAGAAAAACAAAAACATCCAGCAGAGGAAGATCATA
TCTTAAAAGTAACGCCTTAGTTGCAGCCTTTGATACACGTAAGTCATTTT
GCACTCCAAGCACCGACGATGATCGAGCGCCAGCGTCATCGCTACGTTCG
CAGGCTGACAATCTCGGCAAGCGCGTGCGGCAATAGTTGAGGCCAGTTTC
ACGAACCATCAATGCATTGCCGAATCTCAGGTTTGTTAGTAATGATCATG
TTTTTACTTTATTCTGAAATATCTTCCCCAGACACGACTTTTTCAATAGC
ACTATTATACCTTGCACGTATTAGTTTGAGGTGCGTAATGTTCTTATGTC
TTGATTCGTCCAATCGACAGGAGAGGCGTAGCTGTCCTCAGTGCGGCGCC
AAGGTGGGATCGAAGGGGAGCCATCGAGTCATCCCGCTCTTCCTCTCAAA
CCTAACCGCCAAGGACACTGGGGAGTTGGAGACGGCGATGATGCGTCTTG
ACGAAGAAAAGCGTCTCCGC
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Coding sequence (CDS) from alignment at F-distichus_contig101454:289..1158-

>mRNA_F-distichus_contig101454.115.1 ID=mRNA_F-distichus_contig101454.115.1|Name=mRNA_F-distichus_contig101454.115.1|organism=Fucus distichus monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at F-distichus_contig101454:289..1158- (Fucus distichus monoicous)
CCCTTACCGCAGGACGGGGAACGGTGCAGTATCTGCCTGGACCCATGGAC
CTCCAAAGGCAAACATAGCCCTTACCGCAGGACGGGGAACGGTGCAGTAT
CTGCCTGGACCCATGGACCTCCAAAGGCAAACATAGGATATGCACCCTTC
ACTGCGGGCACTTGTTCGGGAAGGCGTGCATAGAGAGATGGTTGGAGGAT
ATGCACCCTTCACTGCGGGCACTTGTTCGGGAAGGCGTGCATAGAGAGAT
GGTTGGAGGAGAGGCGTAGCTGTCCTCAGTGCGGCGCCAAGGTGGGATCG
AAGGGGAGCCATCGAGTCATCCCGCTCTTCCTCTCAAACCTAACCGCCAA
GGACACTGGGGAGTTGGAGACGGCGATGATGCGTCTTGACGAAGAAAAGC
GTCTCCGCGAGAGGCGTAGCTGTCCTCAGTGCGGCGCCAAGGTGGGATCG
AAGGGGAGCCATCGAGTCATCCCGCTCTTCCTCTCAAACCTAACCGCCAA
GGACACTGGGGAGTTGGAGACGGCGATGATGCGTCTTGACGAAGAAAAGC
GTCTCCGC
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