mRNA_F-distichus_contig101422.112.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig101422.112.1
Unique NamemRNA_F-distichus_contig101422.112.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig101422.112.1 vs. uniprot
Match: D7G2B4_ECTSI (Cation_ATPase_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2B4_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 3.510e-35
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 1 
Query:    1 QAFICFLISCNIGEIVTIFFATLLGLPEPLTPLHLLWVNLVTDGPPATALGFNPPDPDAMNKPPRPK 201
            QAFICFLISCNIGEI TIFFATLLGLPEPLTPLHLLWVNLVTDGPPATALGFNPPDPDAM+KPPRPK
Sbjct:  756 QAFICFLISCNIGEIATIFFATLLGLPEPLTPLHLLWVNLVTDGPPATALGFNPPDPDAMSKPPRPK 822
[Close]
BLAST of mRNA_F-distichus_contig101422.112.1 vs. uniprot
Match: A0A835YQB3_9STRA (Cation_ATPase_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQB3_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.270e-34
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:    1 QAFICFLISCNIGEIVTIFFATLLGLPEPLTPLHLLWVNLVTDGPPATALGFNPPDPDAMNKPPRPK 201
            QAFICFLISCNIGEI TIFFATLLG+PEPLTPLHLLWVNLVTDGPPATALGFNPPDPDAM KPPRP+
Sbjct:  832 QAFICFLISCNIGEIATIFFATLLGIPEPLTPLHLLWVNLVTDGPPATALGFNPPDPDAMTKPPRPR 898
[Close]
BLAST of mRNA_F-distichus_contig101422.112.1 vs. uniprot
Match: A0A7S2V6Q7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6Q7_9STRA)

HSP 1 Score: 132 bits (331), Expect = 4.210e-34
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 QAFICFLISCNIGEIVTIFFATLLGLPEPLTPLHLLWVNLVTDGPPATALGFNPPDPDAMNKPPRP 198
            QAFICFLISCNIGEI TIFFATL+GLPEPLTPLHLLWVNLVTDGPPATALGFNPPDPDAM KPPRP
Sbjct:  693 QAFICFLISCNIGEIATIFFATLMGLPEPLTPLHLLWVNLVTDGPPATALGFNPPDPDAMTKPPRP 758
[Close]
BLAST of mRNA_F-distichus_contig101422.112.1 vs. uniprot
Match: A0A835Z421_9STRA (Cation_ATPase_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z421_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.070e-33
Identity = 62/67 (92.54%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:    1 QAFICFLISCNIGEIVTIFFATLLGLPEPLTPLHLLWVNLVTDGPPATALGFNPPDPDAMNKPPRPK 201
            QAFICFLISCNIGEI  IFFATLLG+PEPLTPLHLLWVNLVTDGPPATALGFNPPDPDAM+KPPRP+
Sbjct:  678 QAFICFLISCNIGEIACIFFATLLGIPEPLTPLHLLWVNLVTDGPPATALGFNPPDPDAMSKPPRPR 744
[Close]
BLAST of mRNA_F-distichus_contig101422.112.1 vs. uniprot
Match: A0A7S2D5V9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D5V9_9STRA)

HSP 1 Score: 120 bits (301), Expect = 2.450e-32
Identity = 56/65 (86.15%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    1 QAFICFLISCNIGEIVTIFFATLLGLPEPLTPLHLLWVNLVTDGPPATALGFNPPDPDAMNKPPR 195
            QAFICFLISCN+GEI T+FF+TL+GLP+PLTPL LLWVNLVTDGPPATALGFNPPDP AM+KPPR
Sbjct:   99 QAFICFLISCNLGEIATVFFSTLIGLPDPLTPLQLLWVNLVTDGPPATALGFNPPDPMAMSKPPR 163
[Close]
BLAST of mRNA_F-distichus_contig101422.112.1 vs. uniprot
Match: A0A6V1P7M5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P7M5_HETAK)

HSP 1 Score: 125 bits (315), Expect = 6.100e-32
Identity = 59/67 (88.06%), Postives = 64/67 (95.52%), Query Frame = 1 
Query:    1 QAFICFLISCNIGEIVTIFFATLLGLPEPLTPLHLLWVNLVTDGPPATALGFNPPDPDAMNKPPRPK 201
            Q+FICFLISCN+GEI TIFF+T+LGLPEPLTPLHLLWVNLVTDGPPATALGFNPPDPDAM +PPR K
Sbjct:  838 QSFICFLISCNLGEIATIFFSTMLGLPEPLTPLHLLWVNLVTDGPPATALGFNPPDPDAMYRPPRAK 904
[Close]
BLAST of mRNA_F-distichus_contig101422.112.1 vs. uniprot
Match: A0A4D9D109_9STRA (Cation_ATPase_N domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D109_9STRA)

HSP 1 Score: 125 bits (314), Expect = 8.330e-32
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:    1 QAFICFLISCNIGEIVTIFFATLLGLPEPLTPLHLLWVNLVTDGPPATALGFNPPDPDAMNKPPR 195
            QAFICFLISCNIGEI+TIF AT+LGLPEPLTPLHLLWVNLVTDGPPATALGFNPPDPDAM KPPR
Sbjct:  883 QAFICFLISCNIGEILTIFGATVLGLPEPLTPLHLLWVNLVTDGPPATALGFNPPDPDAMLKPPR 947
[Close]
BLAST of mRNA_F-distichus_contig101422.112.1 vs. uniprot
Match: A0A7S1TZD7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZD7_9STRA)

HSP 1 Score: 123 bits (308), Expect = 5.360e-31
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    1 QAFICFLISCNIGEIVTIFFATLLGLPEPLTPLHLLWVNLVTDGPPATALGFNPPDPDAMNKPPR 195
            Q+FICFLISCNIGEI TIF ATLLGLPEPLTPLHLLWVNLVTDGPPATALGFNPPDPDAM++ PR
Sbjct:  658 QSFICFLISCNIGEIATIFIATLLGLPEPLTPLHLLWVNLVTDGPPATALGFNPPDPDAMSQKPR 722
[Close]
BLAST of mRNA_F-distichus_contig101422.112.1 vs. uniprot
Match: A0A7S2D6D9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D6D9_9STRA)

HSP 1 Score: 120 bits (301), Expect = 5.600e-31
Identity = 56/65 (86.15%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    1 QAFICFLISCNIGEIVTIFFATLLGLPEPLTPLHLLWVNLVTDGPPATALGFNPPDPDAMNKPPR 195
            QAFICFLISCN+GEI T+FF+TL+GLP+PLTPL LLWVNLVTDGPPATALGFNPPDP AM+KPPR
Sbjct:   99 QAFICFLISCNLGEIATVFFSTLIGLPDPLTPLQLLWVNLVTDGPPATALGFNPPDPMAMSKPPR 163
[Close]
BLAST of mRNA_F-distichus_contig101422.112.1 vs. uniprot
Match: A0A7R9YDT0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDT0_9STRA)

HSP 1 Score: 121 bits (303), Expect = 6.080e-31
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    1 QAFICFLISCNIGEIVTIFFATLLGLPEPLTPLHLLWVNLVTDGPPATALGFNPPDPDAMNKPPR 195
            Q+FICFLISCNIGEI TIF +TL+GLPEPLTPLHLLWVNLVTDGPPATALGFNPPDPDAM + PR
Sbjct:  193 QSFICFLISCNIGEIATIFLSTLIGLPEPLTPLHLLWVNLVTDGPPATALGFNPPDPDAMTRKPR 257
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101422.112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2B4_ECTSI3.510e-3597.01Cation_ATPase_N domain-containing protein n=1 Tax=... [more]
A0A835YQB3_9STRA2.270e-3494.03Cation_ATPase_N domain-containing protein n=1 Tax=... [more]
A0A7S2V6Q7_9STRA4.210e-3495.45Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835Z421_9STRA1.070e-3392.54Cation_ATPase_C domain-containing protein n=1 Tax=... [more]
A0A7S2D5V9_9STRA2.450e-3286.15Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A6V1P7M5_HETAK6.100e-3288.06Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9D109_9STRA8.330e-3293.85Cation_ATPase_N domain-containing protein n=3 Tax=... [more]
A0A7S1TZD7_9STRA5.360e-3190.77Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2D6D9_9STRA5.600e-3186.15Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9YDT0_9STRA6.080e-3187.69Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101422contigF-distichus_contig101422:80..301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.8
Seed ortholog evalue1.6e-29
Seed eggNOG ortholog2880.D7G2B4
KEGG koko:K01537
KEGG TC3.A.3.2
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.calcium-transporting ATPase activity
EggNOG OGsCOG0474@1,KOG0202@2759
EC3.6.3.8
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928930.0471396-CDS-F-distichus_contig101422:79..3011622928930.0471396-CDS-F-distichus_contig101422:79..301Fucus distichus monoicousCDSF-distichus_contig101422 80..301 -
1690885071.004033-CDS-F-distichus_contig101422:79..3011690885071.004033-CDS-F-distichus_contig101422:79..301Fucus distichus monoicousCDSF-distichus_contig101422 80..301 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101422.112.1prot_F-distichus_contig101422.112.1Fucus distichus monoicouspolypeptideF-distichus_contig101422 80..301 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig101422.112.1

>prot_F-distichus_contig101422.112.1 ID=prot_F-distichus_contig101422.112.1|Name=mRNA_F-distichus_contig101422.112.1|organism=Fucus distichus monoicous|type=polypeptide|length=74bp
QAFICFLISCNIGEIVTIFFATLLGLPEPLTPLHLLWVNLVTDGPPATAL
GFNPPDPDAMNKPPRPKVRKGVE*
back to top

mRNA from alignment at F-distichus_contig101422:80..301-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig101422.112.1 ID=mRNA_F-distichus_contig101422.112.1|Name=mRNA_F-distichus_contig101422.112.1|organism=Fucus distichus monoicous|type=mRNA|length=222bp|location=Sequence derived from alignment at F-distichus_contig101422:80..301- (Fucus distichus monoicous)
CAGGCGTTCATCTGCTTCCTGATCTCGTGCAACATCGGCGAGATTGTGAC
GATCTTTTTCGCCACCCTTCTGGGGCTGCCGGAGCCCCTGACCCCCCTCC
ATTTGCTGTGGGTCAACCTCGTGACGGATGGGCCACCGGCAACTGCTCTG
GGCTTCAACCCGCCTGATCCAGATGCCATGAACAAGCCTCCGCGGCCGAA
GGTAAGGAAAGGCGTGGAGTAA
back to top

Coding sequence (CDS) from alignment at F-distichus_contig101422:80..301-

>mRNA_F-distichus_contig101422.112.1 ID=mRNA_F-distichus_contig101422.112.1|Name=mRNA_F-distichus_contig101422.112.1|organism=Fucus distichus monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at F-distichus_contig101422:80..301- (Fucus distichus monoicous)
CAGGCGTTCATCTGCTTCCTGATCTCGTGCAACATCGGCGAGATTGTGAC
GATCTTTTTCGCCACCCTTCTGGGGCTGCCGGAGCCCCTGACCCCCCTCC
ATTTGCTGTGGGTCAACCTCGTGACGGATGGGCCACCGGCAACTGCTCTG
GGCTTCAACCCGCCTGATCCAGATGCCATGAACAAGCCTCCGCGGCCGAA
GGTAAGGAAAGGCGTGGAGTAACAGGCGTTCATCTGCTTCCTGATCTCGT
GCAACATCGGCGAGATTGTGACGATCTTTTTCGCCACCCTTCTGGGGCTG
CCGGAGCCCCTGACCCCCCTCCATTTGCTGTGGGTCAACCTCGTGACGGA
TGGGCCACCGGCAACTGCTCTGGGCTTCAACCCGCCTGATCCAGATGCCA
TGAACAAGCCTCCGCGGCCGAAGGTAAGGAAAGGCGTGGAGTAA
back to top