mRNA_F-distichus_contig101382.109.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig101382.109.1
Unique NamemRNA_F-distichus_contig101382.109.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig101382.109.1 vs. uniprot
Match: D7G6X7_ECTSI (Chloroplast 50S ribosomal protein 17 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6X7_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.230e-33
Identity = 60/69 (86.96%), Postives = 65/69 (94.20%), Query Frame = 1
Query:    1 LFRNMVTSFIYHERIRTTVPRAKELRKLADNMVTLAKKGTLHHQRQAEAVVREHGAVVKLFELLGPRYK 207
            + RNMVTSFIYHERIRTTVPRAKELRK+ADNMVTLAKKGT HHQRQA+ VVRE+ AVVKLFE+LGPRYK
Sbjct:   20 MLRNMVTSFIYHERIRTTVPRAKELRKVADNMVTLAKKGTPHHQRQAQGVVRENAAVVKLFEVLGPRYK 88          
BLAST of mRNA_F-distichus_contig101382.109.1 vs. uniprot
Match: A0A812VM99_SYMMI (RplQ protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VM99_SYMMI)

HSP 1 Score: 89.7 bits (221), Expect = 6.810e-22
Identity = 45/65 (69.23%), Postives = 52/65 (80.00%), Query Frame = 1
Query:   13 MVTSFIYHERIRTTVPRAKELRKLADNMVTLAKKGTLHHQRQAEAVVREHGAVVKLFELLGPRYK 207
            MVTS IYHERI TT  RAKELR++A+ M+T AKKG LH +R A  VVRE  AVVKLF++LGPRYK
Sbjct:    1 MVTSLIYHERIMTTTARAKELRRVAEKMITKAKKGDLHSRRLAAGVVRERAAVVKLFDILGPRYK 65          
BLAST of mRNA_F-distichus_contig101382.109.1 vs. uniprot
Match: A0A7S0ASE6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ASE6_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.860e-21
Identity = 46/69 (66.67%), Postives = 55/69 (79.71%), Query Frame = 1
Query:    1 LFRNMVTSFIYHERIRTTVPRAKELRKLADNMVTLAKKGTLHHQRQAEAVVREHGAVVKLFELLGPRYK 207
            + RNMVTS I HERI TT+P+AKELRKLAD MV L K G+LH +RQA AV+RE   + KLFE+LGPRY+
Sbjct:   58 MLRNMVTSLIKHERIVTTLPKAKELRKLADKMVGLGKSGSLHSRRQAGAVIRERPVLTKLFEILGPRYE 126          
BLAST of mRNA_F-distichus_contig101382.109.1 vs. uniprot
Match: A0A7S3PMY3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PMY3_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 4.440e-21
Identity = 44/68 (64.71%), Postives = 58/68 (85.29%), Query Frame = 1
Query:    1 LFRNMVTSFIYHERIRTTVPRAKELRKLADNMVTLAKKGTLHHQRQAEAVVREHGAVVKLFELLGPRY 204
            + RNMVTS I++ERI+TTVP+AKELR++AD MVTL KKG+LH +RQ+  VVR+  A+ KLF++LGPRY
Sbjct:   20 MLRNMVTSLIHYERIKTTVPKAKELRRVADWMVTLGKKGSLHARRQSLKVVRDKAAMHKLFDVLGPRY 87          
BLAST of mRNA_F-distichus_contig101382.109.1 vs. uniprot
Match: A0A7S3QJX6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJX6_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 9.360e-21
Identity = 44/69 (63.77%), Postives = 55/69 (79.71%), Query Frame = 1
Query:    1 LFRNMVTSFIYHERIRTTVPRAKELRKLADNMVTLAKKGTLHHQRQAEAVVREHGAVVKLFELLGPRYK 207
            + RNMVTS IYHERI TTVP+AKE+R LA+ ++  AK G+LH +R A+ VVRE  AV KLFE+LGPRY+
Sbjct:   20 MLRNMVTSLIYHERIVTTVPKAKEVRHLAEKIIKHAKNGSLHSRRLADKVVREEPAVTKLFEVLGPRYQ 88          
BLAST of mRNA_F-distichus_contig101382.109.1 vs. uniprot
Match: A0A7S2LPJ0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LPJ0_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.970e-20
Identity = 42/68 (61.76%), Postives = 55/68 (80.88%), Query Frame = 1
Query:    1 LFRNMVTSFIYHERIRTTVPRAKELRKLADNMVTLAKKGTLHHQRQAEAVVREHGAVVKLFELLGPRY 204
            + RNMVTS IYHERI TT P+AKEL++LA+ M+   K G+LH +RQA+A++RE  A+ KLFE+LGPRY
Sbjct:   20 MLRNMVTSLIYHERIVTTTPKAKELKRLAEWMIGFGKDGSLHARRQADAILREKPALTKLFEVLGPRY 87          
BLAST of mRNA_F-distichus_contig101382.109.1 vs. uniprot
Match: UPI00127E525F (50S ribosomal protein L17 n=1 Tax=Desulfuromonas sp. AOP6 TaxID=1566351 RepID=UPI00127E525F)

HSP 1 Score: 87.4 bits (215), Expect = 3.000e-20
Identity = 43/69 (62.32%), Postives = 54/69 (78.26%), Query Frame = 1
Query:    1 LFRNMVTSFIYHERIRTTVPRAKELRKLADNMVTLAKKGTLHHQRQAEAVVREHGAVVKLFELLGPRYK 207
            + RNMVTS I HE+I TT  RAKELRK+A+ M+TL K+G LH +RQA AV+RE  AV KLF+++ PRYK
Sbjct:   20 MMRNMVTSLIMHEKITTTDARAKELRKIAEKMITLGKRGDLHARRQALAVIRERKAVAKLFDMVAPRYK 88          
BLAST of mRNA_F-distichus_contig101382.109.1 vs. uniprot
Match: A0A832EIK2_9DELT (50S ribosomal protein L17 n=1 Tax=Desulfacinum infernum TaxID=35837 RepID=A0A832EIK2_9DELT)

HSP 1 Score: 86.7 bits (213), Expect = 3.550e-20
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 1
Query:    1 LFRNMVTSFIYHERIRTTVPRAKELRKLADNMVTLAKKGTLHHQRQAEAVVREHGAVVKLFELLGPRYK 207
            +FRNMVTS + HERI TTVP+AKE+R+ AD+M+TL K+G LH +RQA AVVR    V KLF  LGPRY+
Sbjct:   20 MFRNMVTSLLEHERIVTTVPKAKEIRRWADSMITLGKRGDLHARRQALAVVRRKDVVHKLFAELGPRYQ 88          
BLAST of mRNA_F-distichus_contig101382.109.1 vs. uniprot
Match: UPI0019A40A4D (50S ribosomal protein L17 n=1 Tax=Terasakiella brassicae TaxID=1634917 RepID=UPI0019A40A4D)

HSP 1 Score: 85.9 bits (211), Expect = 8.740e-20
Identity = 40/69 (57.97%), Postives = 54/69 (78.26%), Query Frame = 1
Query:    1 LFRNMVTSFIYHERIRTTVPRAKELRKLADNMVTLAKKGTLHHQRQAEAVVREHGAVVKLFELLGPRYK 207
            LF NM  + I HE+I+TT+P+AK+LR +AD M+TL K+G LH +RQA A +R+  AV KLF++LGPRYK
Sbjct:   20 LFANMAVALITHEQIKTTLPKAKDLRSIADKMITLGKRGDLHARRQAMATLRDEAAVKKLFDVLGPRYK 88          
BLAST of mRNA_F-distichus_contig101382.109.1 vs. uniprot
Match: A0A7R9W6F4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W6F4_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 9.890e-20
Identity = 43/68 (63.24%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    1 LFRNMVTSFIYHERIRTTVPRAKELRKLADNMVTLAKKGTLHHQRQAEAVVREHGAVVKLFELLGPRY 204
            + RNM TS I HERI TTV +AKELRKLADN++   KKGT+  +RQA A++RE   V KLFE+LGPRY
Sbjct:   20 MLRNMATSLIKHERIVTTVAKAKELRKLADNLIGFGKKGTVQARRQANAIIREKPMVTKLFEVLGPRY 87          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101382.109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6X7_ECTSI1.230e-3386.96Chloroplast 50S ribosomal protein 17 n=2 Tax=Ectoc... [more]
A0A812VM99_SYMMI6.810e-2269.23RplQ protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A7S0ASE6_9STRA1.860e-2166.67Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A7S3PMY3_9STRA4.440e-2164.71Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S3QJX6_9STRA9.360e-2163.77Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2LPJ0_9STRA1.970e-2061.76Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
UPI00127E525F3.000e-2062.3250S ribosomal protein L17 n=1 Tax=Desulfuromonas s... [more]
A0A832EIK2_9DELT3.550e-2063.7750S ribosomal protein L17 n=1 Tax=Desulfacinum inf... [more]
UPI0019A40A4D8.740e-2057.9750S ribosomal protein L17 n=1 Tax=Terasakiella bra... [more]
A0A7R9W6F4_9STRA9.890e-2063.24Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101382contigF-distichus_contig101382:710..1582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.4
Seed ortholog evalue6.3e-25
Seed eggNOG ortholog2880.D7G6X7
KEGG rclassRC00293,RC01792,RC01815,RC02504
KEGG koko:K02879,ko:K14652
KEGG ReactionR00425,R07281
KEGG Pathwayko00740,ko00790,ko01100,ko01110,ko03010,map00740,map00790,map01100,map01110,map03010
KEGG ModuleM00125,M00178,M00840
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005829,GO:0005840,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0015934,GO:0016043,GO:0022625,GO:0022626,GO:0031974,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070013,GO:0071840,GO:0098798,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0203@1,KOG3280@2759
EC3.5.4.25,4.1.99.12
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Exons2
Model size210
Cds size198
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101382.109.1prot_F-distichus_contig101382.109.1Fucus distichus monoicouspolypeptideF-distichus_contig101382 722..1582 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928929.8769221-UTR-F-distichus_contig101382:709..7211622928929.8769221-UTR-F-distichus_contig101382:709..721Fucus distichus monoicousUTRF-distichus_contig101382 710..721 +
1690885070.9161105-UTR-F-distichus_contig101382:709..7211690885070.9161105-UTR-F-distichus_contig101382:709..721Fucus distichus monoicousUTRF-distichus_contig101382 710..721 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928929.8887384-CDS-F-distichus_contig101382:721..8241622928929.8887384-CDS-F-distichus_contig101382:721..824Fucus distichus monoicousCDSF-distichus_contig101382 722..824 +
1690885070.934242-CDS-F-distichus_contig101382:721..8241690885070.934242-CDS-F-distichus_contig101382:721..824Fucus distichus monoicousCDSF-distichus_contig101382 722..824 +
1622928929.8994644-CDS-F-distichus_contig101382:1487..15821622928929.8994644-CDS-F-distichus_contig101382:1487..1582Fucus distichus monoicousCDSF-distichus_contig101382 1488..1582 +
1690885070.9455886-CDS-F-distichus_contig101382:1487..15821690885070.9455886-CDS-F-distichus_contig101382:1487..1582Fucus distichus monoicousCDSF-distichus_contig101382 1488..1582 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig101382.109.1

>prot_F-distichus_contig101382.109.1 ID=prot_F-distichus_contig101382.109.1|Name=mRNA_F-distichus_contig101382.109.1|organism=Fucus distichus monoicous|type=polypeptide|length=66bp
MVTSFIYHERIRTTVPRAKELRKLADNMVTLAKKGTLHHQRQAEAVVREH
GAVVKLFELLGPRYK*
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mRNA from alignment at F-distichus_contig101382:710..1582+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig101382.109.1 ID=mRNA_F-distichus_contig101382.109.1|Name=mRNA_F-distichus_contig101382.109.1|organism=Fucus distichus monoicous|type=mRNA|length=873bp|location=Sequence derived from alignment at F-distichus_contig101382:710..1582+ (Fucus distichus monoicous)
CTCTTCAGGAACATGGTAACGTCCTTCATTTATCACGAACGTATCCGGAC GACCGTGCCAAGGGCGAAGGAACTGAGGAAGCTTGCGGATAACATGGTTA CTTTAGCTAAGAAAGGTGAAGGCAACATGCCCCAGGCATCTACGAAACGC CCCATTCGTCGAAGTACCTCATCGTAGTTGCAGCGAATGACCAACCCTCT CGCCTTTTGCAATGTCCCACGCTGCTAAGGCTTGGACTGATTTGAATATC TGCGGGTCACCGTTTCCCACGGGTTCGTTTATTCGTGATAAAATATTCAA AGGCGTCAACAGGGTTATTCGGCAGTTATTCGGTGGTCACTCGGCAGTTA TTCGGTGGTCATTCGGTAGTGTGGGATCGGCAGGGAGAGATTTGCCATCG GCATAAAGCGATACCTATACTCGTACACAACTTGATTAGAAGTCCACGTT GACCAAAACATATATGTTCATAAATTATTTTAGGGTTTACGGTTGAGGCA TGGTCCAGGGTTGAATGACTCCCTTTACCCTTTACCAATACTCGCCACGT ATATCTCCACTCTCCATGTTGCATGTTGATGATTTCTACGTTGGCAATCT CGTCGTTGCCCGGTGTAGTCCTGTATCTATGTTTGTATGGTCATCACACA CAAGTATATACTGTAGTCTTATACCGGTATCATGTAACTCGAATTACTCA AGCAGCGCACGAGCACCTCAGTTGTCATAGTGTTGGTGAATATAGCGCTT GCTGCCGGCGCTCCTCGTGTTACTGCAGGCACGCTGCACCACCAGCGACA AGCGGAAGCGGTTGTGAGGGAGCACGGAGCTGTTGTGAAGCTTTTCGAAC TGCTTGGACCGAGATACAAGTGA
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Coding sequence (CDS) from alignment at F-distichus_contig101382:710..1582+

>mRNA_F-distichus_contig101382.109.1 ID=mRNA_F-distichus_contig101382.109.1|Name=mRNA_F-distichus_contig101382.109.1|organism=Fucus distichus monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at F-distichus_contig101382:710..1582+ (Fucus distichus monoicous)
ATGGTAACGTCCTTCATTTATCACGAACGTATCCGGACGACCGTGCCAAG
GGCGAAGGAACTGAGGAAGCTTGCGGATAACATGGTTACTTTAGCTAAGA
AAGATGGTAACGTCCTTCATTTATCACGAACGTATCCGGACGACCGTGCC
AAGGGCGAAGGAACTGAGGAAGCTTGCGGATAACATGGTTACTTTAGCTA
AGAAAGGCACGCTGCACCACCAGCGACAAGCGGAAGCGGTTGTGAGGGAG
CACGGAGCTGTTGTGAAGCTTTTCGAACTGCTTGGACCGAGATACAAGTG
AGCACGCTGCACCACCAGCGACAAGCGGAAGCGGTTGTGAGGGAGCACGG
AGCTGTTGTGAAGCTTTTCGAACTGCTTGGACCGAGATACAAGTGA
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