mRNA_F-distichus_contig101294.99.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig101294.99.1
Unique NamemRNA_F-distichus_contig101294.99.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig101294.99.1 vs. uniprot
Match: D7G7C2_ECTSI (Rep_fac_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7C2_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 2.940e-47
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 1
Query:    1 EDGEIPHLLFYGPAGSGKKTRVLALLKRIYGPGAERVRLEHRSFKTPSNRVVELTTVASNYHIEMSPGDAGIYDRYIVQ 237
            EDGEIPHLLFYGPAGSGKKTRVLALLKRIYGPGAERVRLEHRSFKTPSNRVVELTTVASNYHIEMSPGDAGIYDRY+VQ
Sbjct:   30 EDGEIPHLLFYGPAGSGKKTRVLALLKRIYGPGAERVRLEHRSFKTPSNRVVELTTVASNYHIEMSPGDAGIYDRYVVQ 108          
BLAST of mRNA_F-distichus_contig101294.99.1 vs. uniprot
Match: A0A835YV35_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV35_9STRA)

HSP 1 Score: 145 bits (365), Expect = 2.040e-40
Identity = 65/79 (82.28%), Postives = 75/79 (94.94%), Query Frame = 1
Query:    1 EDGEIPHLLFYGPAGSGKKTRVLALLKRIYGPGAERVRLEHRSFKTPSNRVVELTTVASNYHIEMSPGDAGIYDRYIVQ 237
            +DGEIPHLLFYGP+G+GK+TR+LALLK I+GPGAERV LEHR+FKTPSNR +ELTTVASNYHIEMSPGDAG YDR++VQ
Sbjct:   30 KDGEIPHLLFYGPSGAGKRTRILALLKEIFGPGAERVHLEHRTFKTPSNRTIELTTVASNYHIEMSPGDAGTYDRFVVQ 108          
BLAST of mRNA_F-distichus_contig101294.99.1 vs. uniprot
Match: A0A8J2WW47_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WW47_9STRA)

HSP 1 Score: 127 bits (319), Expect = 8.830e-34
Identity = 57/79 (72.15%), Postives = 69/79 (87.34%), Query Frame = 1
Query:    1 EDGEIPHLLFYGPAGSGKKTRVLALLKRIYGPGAERVRLEHRSFKTPSNRVVELTTVASNYHIEMSPGDAGIYDRYIVQ 237
            EDG+IPHLLFYGP+G+GKKTRV  LLK +YG GAE+ RLEHR FKTP+N+ +E+TTVASNYHIEM+P DAG  DR++VQ
Sbjct:   30 EDGDIPHLLFYGPSGAGKKTRVQCLLKALYGAGAEKQRLEHREFKTPTNKTIEVTTVASNYHIEMNPSDAGNNDRFVVQ 108          
BLAST of mRNA_F-distichus_contig101294.99.1 vs. uniprot
Match: F0XVP2_AURAN (AAA domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVP2_AURAN)

HSP 1 Score: 127 bits (318), Expect = 1.170e-33
Identity = 55/78 (70.51%), Postives = 70/78 (89.74%), Query Frame = 1
Query:    4 DGEIPHLLFYGPAGSGKKTRVLALLKRIYGPGAERVRLEHRSFKTPSNRVVELTTVASNYHIEMSPGDAGIYDRYIVQ 237
            DG+IPHLLFYGP+G+GKKTR++ALL+ +YG GAE+ RLEHR FKTP+N+ +E+TTVASNYHIE++P DAG  DRY+VQ
Sbjct:   31 DGDIPHLLFYGPSGAGKKTRIMALLRALYGAGAEKQRLEHRDFKTPTNKAIEVTTVASNYHIEINPSDAGNNDRYVVQ 108          
BLAST of mRNA_F-distichus_contig101294.99.1 vs. uniprot
Match: A0A812Q6K0_9DINO (RFC3 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812Q6K0_9DINO)

HSP 1 Score: 120 bits (302), Expect = 4.160e-32
Identity = 51/76 (67.11%), Postives = 68/76 (89.47%), Query Frame = 1
Query:   10 EIPHLLFYGPAGSGKKTRVLALLKRIYGPGAERVRLEHRSFKTPSNRVVELTTVASNYHIEMSPGDAGIYDRYIVQ 237
            +IPH++FYGP+G+GKKTRV+  L+ ++G G E+++LEHRS KTPS R VE+TTVAS+YHIEM+PGDAG+YDR+IVQ
Sbjct:   33 DIPHMMFYGPSGAGKKTRVMGFLRAVFGSGVEKLKLEHRSVKTPSRRTVEITTVASSYHIEMNPGDAGMYDRFIVQ 108          
BLAST of mRNA_F-distichus_contig101294.99.1 vs. uniprot
Match: A0A7S2SEJ8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SEJ8_9STRA)

HSP 1 Score: 122 bits (307), Expect = 4.830e-32
Identity = 54/78 (69.23%), Postives = 67/78 (85.90%), Query Frame = 1
Query:    4 DGEIPHLLFYGPAGSGKKTRVLALLKRIYGPGAERVRLEHRSFKTPSNRVVELTTVASNYHIEMSPGDAGIYDRYIVQ 237
            DG++PHL+ YGP+G+GKKTR+ ALL+ +YG   ER RL+HRSFKTPSNR VELTT+ASNYHIEM+  DAGIYDR ++Q
Sbjct:   31 DGDLPHLIVYGPSGAGKKTRINALLREMYGSAVERRRLDHRSFKTPSNRTVELTTIASNYHIEMNASDAGIYDRIVIQ 108          
BLAST of mRNA_F-distichus_contig101294.99.1 vs. uniprot
Match: A0A8D8VB17_9HEMI (Replication factor C subunit 3 n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8VB17_9HEMI)

HSP 1 Score: 119 bits (297), Expect = 5.610e-32
Identity = 49/78 (62.82%), Postives = 67/78 (85.90%), Query Frame = 1
Query:    1 EDGEIPHLLFYGPAGSGKKTRVLALLKRIYGPGAERVRLEHRSFKTPSNRVVELTTVASNYHIEMSPGDAGIYDRYIV 234
            ++G+ PHLLFYGP+G+GKKTR++ALLK +YGPG ER+R+EH SF TPS + +++ T ASNYHIE++P DAG+YDR +V
Sbjct:   31 KEGDFPHLLFYGPSGAGKKTRIMALLKELYGPGVERLRMEHMSFLTPSKKKIDIMTTASNYHIEVNPSDAGMYDRVVV 108          
BLAST of mRNA_F-distichus_contig101294.99.1 vs. uniprot
Match: A0A1R0GWM7_9FUNG (Replication factor C subunit 5 n=1 Tax=Smittium mucronatum TaxID=133383 RepID=A0A1R0GWM7_9FUNG)

HSP 1 Score: 117 bits (292), Expect = 9.940e-32
Identity = 50/79 (63.29%), Postives = 68/79 (86.08%), Query Frame = 1
Query:    1 EDGEIPHLLFYGPAGSGKKTRVLALLKRIYGPGAERVRLEHRSFKTPSNRVVELTTVASNYHIEMSPGDAGIYDRYIVQ 237
            E  +IPHL+FYGP GSGKKTR++ALL++I+G GAE++R++ RSF TPS+R VE+  ++SNYHIE++P DAGIYDR +VQ
Sbjct:   46 ETSDIPHLMFYGPEGSGKKTRIMALLRQIFGAGAEKIRMDTRSFSTPSSRTVEINMLSSNYHIEINPSDAGIYDRIVVQ 124          
BLAST of mRNA_F-distichus_contig101294.99.1 vs. uniprot
Match: A0A7S1ZPB1_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZPB1_TRICV)

HSP 1 Score: 120 bits (301), Expect = 1.830e-31
Identity = 51/79 (64.56%), Postives = 68/79 (86.08%), Query Frame = 1
Query:    1 EDGEIPHLLFYGPAGSGKKTRVLALLKRIYGPGAERVRLEHRSFKTPSNRVVELTTVASNYHIEMSPGDAGIYDRYIVQ 237
            +   +PHLLFYGP+GSGKKTR++ALL+ IYGPGAER+RL+ R+F TP+ R VE+  ++SNYH+E+SPGDAG+ DRY+VQ
Sbjct:   28 DPASLPHLLFYGPSGSGKKTRIMALLRAIYGPGAERLRLDKRTFTTPTKRTVEVNMISSNYHVEISPGDAGLNDRYVVQ 106          
BLAST of mRNA_F-distichus_contig101294.99.1 vs. uniprot
Match: A0A7S2RDB4_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RDB4_9STRA)

HSP 1 Score: 118 bits (296), Expect = 3.290e-31
Identity = 52/79 (65.82%), Postives = 67/79 (84.81%), Query Frame = 1
Query:    1 EDGEIPHLLFYGPAGSGKKTRVLALLKRIYGPGAERVRLEHRSFKTPSNRVVELTTVASNYHIEMSPGDAGIYDRYIVQ 237
            E G+IPHLLFYGP+G+GKKTRV+ LL+ ++GPG ++VRLEHR+FKT S + +ELTT+ SNYHIEM+P DAG  DR +VQ
Sbjct:   30 ETGDIPHLLFYGPSGAGKKTRVMCLLREMFGPGVQKVRLEHRTFKTASGKPIELTTLGSNYHIEMNPSDAGNNDRLVVQ 108          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101294.99.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7C2_ECTSI2.940e-4798.73Rep_fac_C domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YV35_9STRA2.040e-4082.28P-loop containing nucleoside triphosphate hydrolas... [more]
A0A8J2WW47_9STRA8.830e-3472.15Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0XVP2_AURAN1.170e-3370.51AAA domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A812Q6K0_9DINO4.160e-3267.11RFC3 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A7S2SEJ8_9STRA4.830e-3269.23Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8D8VB17_9HEMI5.610e-3262.82Replication factor C subunit 3 n=1 Tax=Cacopsylla ... [more]
A0A1R0GWM7_9FUNG9.940e-3263.29Replication factor C subunit 5 n=1 Tax=Smittium mu... [more]
A0A7S1ZPB1_TRICV1.830e-3164.56Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2RDB4_9STRA3.290e-3165.82Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101294contigF-distichus_contig101294:675..911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.5
Seed ortholog evalue7.8e-38
Seed eggNOG ortholog2880.D7G7C2
Preferred nameRFC3
KEGG koko:K10756
KEGG Pathwayko03030,ko03420,ko03430,map03030,map03420,map03430
KEGG ModuleM00289,M00295
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000723,GO:0000731,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003689,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005663,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006275,GO:0006281,GO:0006283,GO:0006289,GO:0006296,GO:0006297,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010556,GO:0010557,GO:0010604,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019725,GO:0019985,GO:0022402,GO:0022616,GO:0030894,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031389,GO:0031390,GO:0031391,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032991,GO:0032993,GO:0033170,GO:0033260,GO:0033554,GO:0033683,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0042221,GO:0042276,GO:0042592,GO:0042623,GO:0042769,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043599,GO:0043601,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0045935,GO:0046483,GO:0046683,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051276,GO:0051338,GO:0051347,GO:0051606,GO:0051716,GO:0060249,GO:0060255,GO:0061860,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070914,GO:0070987,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090618,GO:0097159,GO:0098813,GO:0104004,GO:1900262,GO:1900264,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1904949,GO:2000112,GO:2000278,GO:2000573
EggNOG free text desc.DNA replication
EggNOG OGsCOG0470@1,KOG2035@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03036,ko03400
Exons1
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928928.803323-CDS-F-distichus_contig101294:674..9111622928928.803323-CDS-F-distichus_contig101294:674..911Fucus distichus monoicousCDSF-distichus_contig101294 675..911 +
1690885070.2972944-CDS-F-distichus_contig101294:674..9111690885070.2972944-CDS-F-distichus_contig101294:674..911Fucus distichus monoicousCDSF-distichus_contig101294 675..911 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101294.99.1prot_F-distichus_contig101294.99.1Fucus distichus monoicouspolypeptideF-distichus_contig101294 675..911 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig101294.99.1

>prot_F-distichus_contig101294.99.1 ID=prot_F-distichus_contig101294.99.1|Name=mRNA_F-distichus_contig101294.99.1|organism=Fucus distichus monoicous|type=polypeptide|length=79bp
EDGEIPHLLFYGPAGSGKKTRVLALLKRIYGPGAERVRLEHRSFKTPSNR
VVELTTVASNYHIEMSPGDAGIYDRYIVQ
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mRNA from alignment at F-distichus_contig101294:675..911+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig101294.99.1 ID=mRNA_F-distichus_contig101294.99.1|Name=mRNA_F-distichus_contig101294.99.1|organism=Fucus distichus monoicous|type=mRNA|length=237bp|location=Sequence derived from alignment at F-distichus_contig101294:675..911+ (Fucus distichus monoicous)
GAGGACGGCGAGATTCCGCACCTCCTTTTCTACGGCCCCGCCGGGTCAGG CAAAAAGACCAGGGTCCTGGCGCTCCTGAAGCGCATCTACGGGCCGGGGG CAGAGAGAGTTCGGCTCGAGCACCGGAGCTTCAAGACTCCCAGCAATCGC GTCGTGGAGCTGACCACGGTTGCGTCGAACTATCACATCGAGATGTCGCC GGGGGACGCGGGAATCTACGACCGTTACATCGTCCAG
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Coding sequence (CDS) from alignment at F-distichus_contig101294:675..911+

>mRNA_F-distichus_contig101294.99.1 ID=mRNA_F-distichus_contig101294.99.1|Name=mRNA_F-distichus_contig101294.99.1|organism=Fucus distichus monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at F-distichus_contig101294:675..911+ (Fucus distichus monoicous)
GAGGACGGCGAGATTCCGCACCTCCTTTTCTACGGCCCCGCCGGGTCAGG
CAAAAAGACCAGGGTCCTGGCGCTCCTGAAGCGCATCTACGGGCCGGGGG
CAGAGAGAGTTCGGCTCGAGCACCGGAGCTTCAAGACTCCCAGCAATCGC
GTCGTGGAGCTGACCACGGTTGCGTCGAACTATCACATCGAGATGTCGCC
GGGGGACGCGGGAATCTACGACCGTTACATCGTCCAGGAGGACGGCGAGA
TTCCGCACCTCCTTTTCTACGGCCCCGCCGGGTCAGGCAAAAAGACCAGG
GTCCTGGCGCTCCTGAAGCGCATCTACGGGCCGGGGGCAGAGAGAGTTCG
GCTCGAGCACCGGAGCTTCAAGACTCCCAGCAATCGCGTCGTGGAGCTGA
CCACGGTTGCGTCGAACTATCACATCGAGATGTCGCCGGGGGACGCGGGA
ATCTACGACCGTTACATCGTCCAG
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