mRNA_F-distichus_contig101250.96.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig101250.96.1
Unique NamemRNA_F-distichus_contig101250.96.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101250.96.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101250contigF-distichus_contig101250:401..1817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size339
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101250.96.1prot_F-distichus_contig101250.96.1Fucus distichus monoicouspolypeptideF-distichus_contig101250 401..1799 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928928.5705936-CDS-F-distichus_contig101250:400..5311622928928.5705936-CDS-F-distichus_contig101250:400..531Fucus distichus monoicousCDSF-distichus_contig101250 401..531 +
1690885070.1942737-CDS-F-distichus_contig101250:400..5311690885070.1942737-CDS-F-distichus_contig101250:400..531Fucus distichus monoicousCDSF-distichus_contig101250 401..531 +
1622928928.5837705-CDS-F-distichus_contig101250:1609..17991622928928.5837705-CDS-F-distichus_contig101250:1609..1799Fucus distichus monoicousCDSF-distichus_contig101250 1610..1799 +
1690885070.2087452-CDS-F-distichus_contig101250:1609..17991690885070.2087452-CDS-F-distichus_contig101250:1609..1799Fucus distichus monoicousCDSF-distichus_contig101250 1610..1799 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928928.5954707-UTR-F-distichus_contig101250:1799..18171622928928.5954707-UTR-F-distichus_contig101250:1799..1817Fucus distichus monoicousUTRF-distichus_contig101250 1800..1817 +
1690885070.2176259-UTR-F-distichus_contig101250:1799..18171690885070.2176259-UTR-F-distichus_contig101250:1799..1817Fucus distichus monoicousUTRF-distichus_contig101250 1800..1817 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig101250.96.1

>prot_F-distichus_contig101250.96.1 ID=prot_F-distichus_contig101250.96.1|Name=mRNA_F-distichus_contig101250.96.1|organism=Fucus distichus monoicous|type=polypeptide|length=107bp
MGGSLKKQKAWYLRLHQGYSRSCTQEPPDSRPVRGGTETPQVPTWIVLGV
SSPDCNQNRTGLVRTGRQGMRVVTAVNAGAAGEWTPDCPHRTVLYYSDSV
LSCAYN*
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mRNA from alignment at F-distichus_contig101250:401..1817+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig101250.96.1 ID=mRNA_F-distichus_contig101250.96.1|Name=mRNA_F-distichus_contig101250.96.1|organism=Fucus distichus monoicous|type=mRNA|length=1417bp|location=Sequence derived from alignment at F-distichus_contig101250:401..1817+ (Fucus distichus monoicous)
ATGGGGGGTAGTTTAAAAAAACAAAAAGCATGGTATCTTCGATTACACCA
GGGCTACAGCAGAAGTTGCACACAGGAGCCACCCGACAGCCGACCGGTCC
GCGGAGGCACGGAAACGCCACAGGTCCCCACGTAAGGATCACAATTTCTT
TGTGTGTGTTTGTTAGTATGAGTTTTCGTTGGTTGGAAAGTCATTTTTCC
CACCTTCCCATCACCTGTACAACACGTGGTTACTCGGGATTTAGACCACA
CCCTGGTTTTGAAACATACATACCCGTCCACACGACGTGTATCCCGAGAG
ACCATTTGCGTAGAAGATACTATGCACTATTTTCTTCGTCGAGGTTGAGT
CGGCATCCGTTTCCGTGGTAGGCATGATGCTCTGTCGGTCATCACAAAAT
GTGTGTGCGTATGTACCAGAGACCTTACTTTAAATTCAAGACAAGAGATC
TTTTGAAAAAGGTGTGTGTGTGTACCAATTCTGGTCTTGACAACATTTCC
GCCAACATATGGTTATTTTTTAGAGAGGTGAAGATAACGATTCGTCGCGG
ACAAGCTCGTATTCACGACGAACCTTTCGCACACTGCCGTCAACATACCC
GGAAAAGATGGTCACACCTTTGTCGCATCGAACGACGGGCGTGTTCATAA
CTTCTTGACGACCGAAGTCGGGATATTCTAGTATATACACGAGGCAATGG
GGTACGTACCTGATCTCGCCGCCTTTTTTGTATTCATGAACTTTTGCCGT
GGATACTTTTTTTGATATTGAGCCACAGAAACGATCTCGATTCACGAAAC
TCGGAGCACAAACGCAACACAGAGTAATATAGCAGTTCATACCTCCTTCT
GCATCGAAGCAGCCTGAGATAACGTGCGCGGGGGACAAATGTGTGGTTTT
CTTTAGTTTTGGTCAGGCGTTTTCCGGCAGCACACGAAATGCCGCAAAAC
CTCCAGGCGTCACAGTACAGTTGGTGCAAACATCAGGATGCTATGCAAAC
CCGCTGCAGTCATGACGTTCGTGCTACGGGAAGGCATCTTCGACTTGACA
TGATGACGCACCGGGATGCCTTCCCCATATCGCAGAACGTTTGCAGTCTT
CGATACATTTGGTGTCGGTTGGGGCATACTCACCCACAAAATGTAAAAAA
ATGCATCACAGAGGACTCCTGTGTACCACACTTGCGCTCGCTGCGTTCGG
ACCGTACAGGTGGATTGTCCTTGGAGTGTCGTCGCCGGACTGTAATCAAA
ACCGAACCGGTTTGGTGAGGACCGGCAGGCAGGGCATGCGTGTGGTGACG
GCTGTCAACGCAGGGGCGGCAGGCGAATGGACGCCAGACTGCCCTCACCG
TACTGTGCTGTACTACAGCGATTCTGTGTTGTCATGCGCCTATAATTAGA
CTGTGATGCCCAAGGAT
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Coding sequence (CDS) from alignment at F-distichus_contig101250:401..1817+

>mRNA_F-distichus_contig101250.96.1 ID=mRNA_F-distichus_contig101250.96.1|Name=mRNA_F-distichus_contig101250.96.1|organism=Fucus distichus monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at F-distichus_contig101250:401..1817+ (Fucus distichus monoicous)
ATGGGGGGTAGTTTAAAAAAACAAAAAGCATGGTATCTTCGATTACACCA
GGGCTACAGCAGAAGTTGCACACAGGAGCCACCCGACAGCCGACCGGTCC
GCGGAGGCACGGAAACGCCACAGGTCCCCACATGGGGGGTAGTTTAAAAA
AACAAAAAGCATGGTATCTTCGATTACACCAGGGCTACAGCAGAAGTTGC
ACACAGGAGCCACCCGACAGCCGACCGGTCCGCGGAGGCACGGAAACGCC
ACAGGTCCCCACGTGGATTGTCCTTGGAGTGTCGTCGCCGGACTGTAATC
AAAACCGAACCGGTTTGGTGAGGACCGGCAGGCAGGGCATGCGTGTGGTG
ACGGCTGTCAACGCAGGGGCGGCAGGCGAATGGACGCCAGACTGCCCTCA
CCGTACTGTGCTGTACTACAGCGATTCTGTGTTGTCATGCGCCTATAATT
AGGTGGATTGTCCTTGGAGTGTCGTCGCCGGACTGTAATCAAAACCGAAC
CGGTTTGGTGAGGACCGGCAGGCAGGGCATGCGTGTGGTGACGGCTGTCA
ACGCAGGGGCGGCAGGCGAATGGACGCCAGACTGCCCTCACCGTACTGTG
CTGTACTACAGCGATTCTGTGTTGTCATGCGCCTATAATTAG
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