mRNA_F-distichus_contig101219.93.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig101219.93.1
Unique NamemRNA_F-distichus_contig101219.93.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig101219.93.1 vs. uniprot
Match: D8LQZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQZ7_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 9.770e-27
Identity = 54/94 (57.45%), Postives = 65/94 (69.15%), Query Frame = 1 
Query:   88 PLSPWEMELAKVAGTWKGSGAITNEKERCRQWCQMAKASLGPPRDRXXXXXXXXXXXXXXXXXXXRQRLRKLIDAAELNMSFFLVPGLSDKQVM 369
            PLSPWEMELAK AGTW+G+G + +EKERCRQWC +AKASL    ++                    QRLR+L+DAAELN SFFLVPGL+DKQV+
Sbjct:   87 PLSPWEMELAKAAGTWEGTGGVGDEKERCRQWCMIAKASL-QAEEKEREKDNRRGEGKLTGGTARHQRLRQLVDAAELNSSFFLVPGLNDKQVL 179
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BLAST of mRNA_F-distichus_contig101219.93.1 vs. uniprot
Match: A0A6H5L231_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L231_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.670e-13
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   88 PLSPWEMELAKVAGTWKGSGAITNEKERCRQWCQMAKASL 207
            PLSPWEMELAK AGTW+G G + +EKERCRQWC +AKASL
Sbjct:  555 PLSPWEMELAKAAGTWEGPGGVGDEKERCRQWCMIAKASL 594
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101219.93.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQZ7_ECTSI9.770e-2757.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L231_9PHAE2.670e-1377.50Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101219contigF-distichus_contig101219:86..1455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_002240.1
Exons2
Model size369
Cds size369
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928928.1219811-CDS-F-distichus_contig101219:85..3491622928928.1219811-CDS-F-distichus_contig101219:85..349Fucus distichus monoicousCDSF-distichus_contig101219 86..349 +
1690885069.5547607-CDS-F-distichus_contig101219:85..3491690885069.5547607-CDS-F-distichus_contig101219:85..349Fucus distichus monoicousCDSF-distichus_contig101219 86..349 +
1622928928.1370645-CDS-F-distichus_contig101219:1350..14551622928928.1370645-CDS-F-distichus_contig101219:1350..1455Fucus distichus monoicousCDSF-distichus_contig101219 1351..1455 +
1690885069.5694027-CDS-F-distichus_contig101219:1350..14551690885069.5694027-CDS-F-distichus_contig101219:1350..1455Fucus distichus monoicousCDSF-distichus_contig101219 1351..1455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101219.93.1prot_F-distichus_contig101219.93.1Fucus distichus monoicouspolypeptideF-distichus_contig101219 86..1455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig101219.93.1

>prot_F-distichus_contig101219.93.1 ID=prot_F-distichus_contig101219.93.1|Name=mRNA_F-distichus_contig101219.93.1|organism=Fucus distichus monoicous|type=polypeptide|length=123bp
MELDEAEPPLPPPPPARLLQLPPPPPPLPPLSPWEMELAKVAGTWKGSGA
ITNEKERCRQWCQMAKASLGPPRDREREKEGHVSTSILDKDKDRRQRLRK
LIDAAELNMSFFLVPGLSDKQVM
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mRNA from alignment at F-distichus_contig101219:86..1455+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig101219.93.1 ID=mRNA_F-distichus_contig101219.93.1|Name=mRNA_F-distichus_contig101219.93.1|organism=Fucus distichus monoicous|type=mRNA|length=1370bp|location=Sequence derived from alignment at F-distichus_contig101219:86..1455+ (Fucus distichus monoicous)
ATGGAATTGGATGAGGCGGAACCACCGCTGCCTCCGCCGCCGCCCGCCCG
GTTGCTGCAGCTTCCGCCGCCTCCGCCGCCGCTGCCGCCGCTGTCACCGT
GGGAGATGGAGCTGGCCAAGGTGGCGGGTACTTGGAAGGGCTCCGGCGCT
ATCACGAACGAGAAGGAGAGGTGCAGGCAGTGGTGCCAGATGGCGAAGGC
GTCGCTCGGACCTCCGAGAGACAGGGAGAGGGAGAAGGAGGGACACGTGA
GTACTAGTATACTAGTGTTAGTGTTGGTGTGGCGGTCTCTTGGTCGTACT
TTTTCGCAGGGTGCGCGCCGCGTCGTTGTTGCTTTTGCCCTTTCTTTTTG
CTGAGTTGGGAGGGGAGGTGTGGCGTGTGGCGTGACTGCTTTTGCGTGGG
CGGAATGCATCGGAGGGTGGTTTCGAGTAATAAGTCAATCCGTTACTTTT
TTTAGTGCTCCCGGGTTTGGTTTGGTATGGTTTCTTCGCGCTTGATGGAC
GAAGATGTTGAACTTTGGCTCCTTCTGTGTGCTGCAGTTGAAAGCAAAGC
CAAGCTGTGATGGTTAGACAGACTATCGAGGGGTGAGAGCCTTCGTGCGC
AAGTAAATGGGGAAGTAAGCAGCGATCCGCGGGTAGATGGGCTGGTTAAA
AAATGGACGAATAAATAATGACCAAGGAGGTGAGGGCATGTACAAGGAAA
TGTACTAATAGGAATTTCACAAGATTACATATAGTAGGAAATGAACAAGT
TGCGAGTGTACCGCAAAGTGCACGAAGAACTGTTCAAGTATACTATTAAT
AGTACATAATGCATACGTAAATGCAAAATTAATGTACACGCCAGGTGGTA
CTGTTGTATAGTCGAAGAAATGGGGGGGCGTGTATAGTCGAAATAAGGTG
TTCGTGGGAGGGAGGTGTCGCATTCGATGGGATGGTGTTTGGTGTGTATT
TTTGTTTGATAAGGTTTCGTCGATGTTAGCTGTTTTTTGTTGTGGTTGCT
ATTTTATATCGATGTTAGCTGATTACGATCGTATCCATTTGGTATACTTG
TAGCATCACTATGATTAGGACTATGACTGTGATTAGAACTATGACTGTGA
GTATGATCATGACTTATCAATAGTATTCGTACTTTTACGGCGTATGATAA
GTCGACCATCTGTGCCTCCTCGGTTTGTCTGTCGCGAGATAAACCTTTTT
ACCGCAGCAATATGACTCGACTTGACATGACATGGCATGGCATTGATCAG
GCGGCTGCGGCTAAGGACAAGGACAAGGATCGGCGGCAGCGATTGCGAAA
GCTCATCGATGCGGCGGAGCTCAACATGTCGTTCTTTTTGGTGCCGGGGC
TAAGCGACAAACAGGTGATG
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Coding sequence (CDS) from alignment at F-distichus_contig101219:86..1455+

>mRNA_F-distichus_contig101219.93.1 ID=mRNA_F-distichus_contig101219.93.1|Name=mRNA_F-distichus_contig101219.93.1|organism=Fucus distichus monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at F-distichus_contig101219:86..1455+ (Fucus distichus monoicous)
ATGGAATTGGATGAGGCGGAACCACCGCTGCCTCCGCCGCCGCCCGCCCG
GTTGCTGCAGCTTCCGCCGCCTCCGCCGCCGCTGCCGCCGCTGTCACCGT
GGGAGATGGAGCTGGCCAAGGTGGCGGGTACTTGGAAGGGCTCCGGCGCT
ATCACGAACGAGAAGGAGAGGTGCAGGCAGTGGTGCCAGATGGCGAAGGC
GTCGCTCGGACCTCCGAGAGACAGGGAGAGGGAGAAGGAGGGACACGTGA
GTACTAGTATACTAATGGAATTGGATGAGGCGGAACCACCGCTGCCTCCG
CCGCCGCCCGCCCGGTTGCTGCAGCTTCCGCCGCCTCCGCCGCCGCTGCC
GCCGCTGTCACCGTGGGAGATGGAGCTGGCCAAGGTGGCGGGTACTTGGA
AGGGCTCCGGCGCTATCACGAACGAGAAGGAGAGGTGCAGGCAGTGGTGC
CAGATGGCGAAGGCGTCGCTCGGACCTCCGAGAGACAGGGAGAGGGAGAA
GGAGGGACACGTGAGTACTAGTATACTAGACAAGGACAAGGATCGGCGGC
AGCGATTGCGAAAGCTCATCGATGCGGCGGAGCTCAACATGTCGTTCTTT
TTGGTGCCGGGGCTAAGCGACAAACAGGTGATGGACAAGGACAAGGATCG
GCGGCAGCGATTGCGAAAGCTCATCGATGCGGCGGAGCTCAACATGTCGT
TCTTTTTGGTGCCGGGGCTAAGCGACAAACAGGTGATG
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