mRNA_F-distichus_contig10118.92.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10118.92.1
Unique NamemRNA_F-distichus_contig10118.92.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig10118.92.1 vs. uniprot
Match: D7FSP4_ECTSI (PKD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSP4_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.250e-33
Identity = 68/108 (62.96%), Postives = 83/108 (76.85%), Query Frame = 1
Query:    1 TLTASSKIGDPTNDVFVWRVWDDKSTVLEGRELTYVFKTVGRQRVTLSQTVVTTGNTYYMEAYVMVKYVRREIRQLTDQDREAFLNAVEAIYRLPTAQGRAIYGKEYR 324
            T TASS +G P  DVF W   D   TVLEGRE+ + FKT+GRQRV+LSQ VV+TGNT+     VMVKYVRREIR LTD+DREAF +A+E +YRLPT +GR +YG+EY+
Sbjct:  135 TFTASSTLGRPDEDVFKWSFED--GTVLEGREVKHNFKTLGRQRVSLSQIVVSTGNTHETVGSVMVKYVRREIRSLTDKDREAFFDAMETLYRLPTVEGRELYGEEYK 240          
BLAST of mRNA_F-distichus_contig10118.92.1 vs. uniprot
Match: A0A6H5KFJ6_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ6_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 8.050e-33
Identity = 65/109 (59.63%), Postives = 82/109 (75.23%), Query Frame = 1
Query:    1 TLTASSKIGDPTNDVFVWRVWDDKSTVLEGRELTYVFKTVGRQRVTLSQTVVTTGNTYYMEAYVMVKYVRREIRQLTDQDREAFLNAVEAIYRLPTAQGRAIYGKEYRV 327
            TLTA S +GDP  DVF W   D   TVLEGRE+TY+FK VG Q V L+QT+V+TG    +E  VMVKYVRRE+RQL  +DREAFL+A+E +YRLPT +G A+YG +Y++
Sbjct:   39 TLTAGSSVGDPDKDVFKWSFED--GTVLEGREVTYIFKGVGAQTVFLAQTIVSTGRIVQIEDTVMVKYVRREVRQLRAEDREAFLDAMETLYRLPTEEGVALYGDDYKM 145          
BLAST of mRNA_F-distichus_contig10118.92.1 vs. uniprot
Match: A0A6H5L3M0_9PHAE (PKD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3M0_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 5.150e-32
Identity = 65/108 (60.19%), Postives = 79/108 (73.15%), Query Frame = 1
Query:    1 TLTASSKIGDPTNDVFVWRVWDDKSTVLEGRELTYVFKTVGRQRVTLSQTVVTTGNTYYMEAYVMVKYVRREIRQLTDQDREAFLNAVEAIYRLPTAQGRAIYGKEYR 324
            TLTASS +GDP  DVF W   D   TVLEGR + Y F +VG   V L Q  V+TGN Y M ++VMVKYVRREIRQL D+DREAF +A+E +YRLPT++G A+YG EY+
Sbjct:  120 TLTASSTVGDPDADVFQWSFGD--GTVLEGRTVEYTFTSVGLHDVALRQIDVSTGNVYRMSSHVMVKYVRREIRQLKDEDREAFFDAMETLYRLPTSEGNAVYGDEYK 225          
BLAST of mRNA_F-distichus_contig10118.92.1 vs. uniprot
Match: D7G0J9_ECTSI (PKD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J9_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 7.170e-32
Identity = 65/108 (60.19%), Postives = 82/108 (75.93%), Query Frame = 1
Query:    1 TLTASSKIGDPTNDVFVWRVWDDKSTVLEGRELTYVFKTVGRQRVTLSQTVVTTGNTYYMEAYVMVKYVRREIRQLTDQDREAFLNAVEAIYRLPTAQGRAIYGKEYR 324
            TLTA S +GDP  DVF W   D   TVLEGRE+TY+FK VG Q V+L+QT+V+TG    +E  VMVKYVRRE+RQL  +DREAFL+A+E +YRLPT +G A+YG +Y+
Sbjct:  122 TLTAGSSVGDPDRDVFKWSFED--GTVLEGREVTYMFKGVGAQTVSLAQTMVSTGRIVQIEDSVMVKYVRREVRQLKAEDREAFLDAMEKLYRLPTEEGVALYGDDYK 227          
BLAST of mRNA_F-distichus_contig10118.92.1 vs. uniprot
Match: D7G0J8_ECTSI (Putative scytonemin-related tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J8_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 3.870e-26
Identity = 50/107 (46.73%), Postives = 74/107 (69.16%), Query Frame = 1
Query:    4 LTASSKIGDPTNDVFVWRVWDDKSTVLEGRELTYVFKTVGRQRVTLSQTVVTTGNTYYMEAYVMVKYVRREIRQLTDQDREAFLNAVEAIYRLPTAQGRAIYGKEYR 324
            L A S++G+P +DVF+W + ++     EGRE+ Y+F   GR+ + L+QTV +TG  Y +  Y+MVKYVRREIR L + DR AF + +E +YRLPT+QG   +G +Y+
Sbjct:  120 LRAESQVGNPNDDVFLWTIPNENGASFEGREIEYIFTDPGRKDIVLTQTVTSTGERYSLHTYIMVKYVRREIRALNNADRVAFFDTLETLYRLPTSQGVEEFGTDYK 226          
BLAST of mRNA_F-distichus_contig10118.92.1 vs. uniprot
Match: D7G0K0_ECTSI (Tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K0_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 4.110e-22
Identity = 47/78 (60.26%), Postives = 62/78 (79.49%), Query Frame = 1
Query:   91 RELTYVFKTVGRQRVTLSQTVVTTGNTYYMEAYVMVKYVRREIRQLTDQDREAFLNAVEAIYRLPTAQGRAIYGKEYR 324
            R + + FK VGR  V+L Q VV+TG  Y+M + VMVKYVRREIRQLTD+DREAF +A+E +YRLPT +G A+YG++Y+
Sbjct:    3 RRVKHKFKAVGRHEVSLMQIVVSTGEVYHMSSSVMVKYVRREIRQLTDKDREAFFDAMETLYRLPTGEGVALYGEDYK 80          
BLAST of mRNA_F-distichus_contig10118.92.1 vs. uniprot
Match: A0A6H5JNJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ2_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 7.310e-12
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 1
Query:  139 LSQTVVTTGNTYYMEAYVMVKYVRREIRQLTDQDREAFLNAVEAIYRLPTAQGRAIYGKEY 321
            ++ T  T G  +  E  V VKYVRREIR LTD+DRE F NAV  + R+P+A GRA+YG +Y
Sbjct:   57 VAATTSTAGEIFEYEFAVTVKYVRREIRALTDRDRETFFNAVSVLQRVPSAVGRAVYGDKY 117          
BLAST of mRNA_F-distichus_contig10118.92.1 vs. uniprot
Match: A0A6V1TYR0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TYR0_HETAK)

HSP 1 Score: 70.1 bits (170), Expect = 1.070e-11
Identity = 39/93 (41.94%), Postives = 56/93 (60.22%), Query Frame = 1
Query:   46 FVWRVWDDKSTVLEGRELTYVFKTVGRQRVTLSQTVVTTGNTYYMEAYVMVKYVRREIRQLTDQDREAFLNAVEAIYRLPTAQGRAIYGKEYR 324
            F W V D +   L+   +   F TVG + V L+    ++G+    E+ V+VKYVRREIR LTD+DR+  L+A+E IYR+    G  +YG+ YR
Sbjct:  123 FTWEV-DGEVQKLKANAIDLTFTTVGLKSVKLTIADSSSGSVGNYESEVVVKYVRREIRSLTDEDRKRTLDAIETIYRVDQQTGEELYGENYR 214          
BLAST of mRNA_F-distichus_contig10118.92.1 vs. uniprot
Match: A0A6H5K5A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A2_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 5.520e-11
Identity = 33/58 (56.90%), Postives = 40/58 (68.97%), Query Frame = 1
Query:  148 TVVTTGNTYYMEAYVMVKYVRREIRQLTDQDREAFLNAVEAIYRLPTAQGRAIYGKEY 321
            T  T G  +  E  V VKYVRREIR LTD+DRE F NAV  + R+P+A GRA+YG +Y
Sbjct:   71 TTSTAGEIFEYEFAVTVKYVRREIRALTDRDRETFFNAVSVLQRVPSAVGRAVYGDKY 128          
BLAST of mRNA_F-distichus_contig10118.92.1 vs. uniprot
Match: A0A6H5K0F0_9PHAE (Tyrosinase_Cu-bd domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0F0_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 5.860e-11
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 1
Query:  139 LSQTVVTTGNTYYMEAYVMVKYVRREIRQLTDQDREAFLNAVEAIYRLPTAQGRAIYGKEY 321
            ++ T  T G  +  E  V VKYVRREIR LTD+DRE F NAV  + R+P+A GRA+YG +Y
Sbjct:   55 VAATTSTAGEIFEYEFVVTVKYVRREIRALTDRDRETFFNAVSVLQRVPSAVGRALYGDKY 115          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10118.92.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSP4_ECTSI1.250e-3362.96PKD domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5KFJ6_9PHAE8.050e-3359.63TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5L3M0_9PHAE5.150e-3260.19PKD domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0J9_ECTSI7.170e-3260.19PKD domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0J8_ECTSI3.870e-2646.73Putative scytonemin-related tyrosinase n=1 Tax=Ect... [more]
D7G0K0_ECTSI4.110e-2260.26Tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JNJ2_9PHAE7.310e-1254.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6V1TYR0_HETAK1.070e-1141.94Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6H5K5A2_9PHAE5.520e-1156.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0F0_9PHAE5.860e-1154.10Tyrosinase_Cu-bd domain-containing protein n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10118contigF-distichus_contig10118:5920..6921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.0
Seed ortholog evalue4.3e-29
Seed eggNOG ortholog2880.D7FSP4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Common central domain of tyrosinase
EggNOG OGs2D2AI@1,2SM4K@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size341
Cds size339
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10118.92.1prot_F-distichus_contig10118.92.1Fucus distichus monoicouspolypeptideF-distichus_contig10118 5920..6921 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928928.0569234-CDS-F-distichus_contig10118:5919..60111622928928.0569234-CDS-F-distichus_contig10118:5919..6011Fucus distichus monoicousCDSF-distichus_contig10118 5920..6011 +
1690885069.5186384-CDS-F-distichus_contig10118:5919..60111690885069.5186384-CDS-F-distichus_contig10118:5919..6011Fucus distichus monoicousCDSF-distichus_contig10118 5920..6011 +
1622928928.0687823-CDS-F-distichus_contig10118:6390..64991622928928.0687823-CDS-F-distichus_contig10118:6390..6499Fucus distichus monoicousCDSF-distichus_contig10118 6391..6499 +
1690885069.5301192-CDS-F-distichus_contig10118:6390..64991690885069.5301192-CDS-F-distichus_contig10118:6390..6499Fucus distichus monoicousCDSF-distichus_contig10118 6391..6499 +
1622928928.0819676-CDS-F-distichus_contig10118:6783..69211622928928.0819676-CDS-F-distichus_contig10118:6783..6921Fucus distichus monoicousCDSF-distichus_contig10118 6784..6921 +
1690885069.5393057-CDS-F-distichus_contig10118:6783..69211690885069.5393057-CDS-F-distichus_contig10118:6783..6921Fucus distichus monoicousCDSF-distichus_contig10118 6784..6921 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10118.92.1

>prot_F-distichus_contig10118.92.1 ID=prot_F-distichus_contig10118.92.1|Name=mRNA_F-distichus_contig10118.92.1|organism=Fucus distichus monoicous|type=polypeptide|length=113bp
TLTASSKIGDPTNDVFVWRVWDDKSTVLEGRELTYVFKTVGRQRVTLSQT
VVTTGNTYYMEAYVMVKYVRREIRQLTDQDREAFLNAVEAIYRLPTAQGR
AIYGKEYRVRCW*
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mRNA from alignment at F-distichus_contig10118:5920..6921+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10118.92.1 ID=mRNA_F-distichus_contig10118.92.1|Name=mRNA_F-distichus_contig10118.92.1|organism=Fucus distichus monoicous|type=mRNA|length=1002bp|location=Sequence derived from alignment at F-distichus_contig10118:5920..6921+ (Fucus distichus monoicous)
ACCCTCACAGCCTCAAGCAAGATCGGCGATCCAACGAACGACGTCTTTGT TTGGAGAGTTTGGGACGACAAAAGCACGGTGTTGGAGGGAAGGTGAGAGG CAGCATCGCGGGGGGGAGCGCGGCTGAAACTTTGTCAGAGATATAGATGT CACTCCGCGAGGAGGAAGTACAATACGTTTTTGCCGTCTAATGTGGCTTT TTCTTTATCCTCTCGAGAAACGATAACGGCTTGAAACCTTTGGTTCATCG TTGGTATGTAGTAAGTCCCTGATACACATCGTTGGAAGAAGGTTTACTTG AGATAAGAGCGGAGTTTGTTGTATTCGCTGAAACAAAATCATGTTCCACC TTTGATATTCATCCGCTCAACATCTCGAAAGAAACCGTACCTTCTTTTAC AAACGTGGTTGATGCCGTTTAAGAAACCTTTGATTCGAACACCACTCCGA TCGATCCATATGTATCCCCAGAGAGTTGACATACGTGTTCAAGACAGTGG GACGCCAGCGGGTTACTCTTAGCCAGACTGTGGTGACCACGGGCAACACA TACTACATGGAAGCGTACGTCATGGTCAAGGTAGTTGCCGTACATTGGCC TGGAGTTCCAGCCGCACTGAGTAAACTTCAAATAATGTGGAAACCGATCG CTCTTTTGGAAGGCTCACGAGATATCATTTCGCGCGCTAGTATGGTTATG CCTGTTGCCATTGCGAGTTTAGTTTGTTTAATTTTCGTACAATGTTGGAA TACAGTAATCAAGTCTTGCCTCTACCTTTCATCTATGCTTGGGTTTGAAG TCCTCGTGTCGAGTTTGAGCACTCTTTGACTCACACCGTTGTACCTGTGA CGTCCACTACGCAGTATGTGCGCCGAGAAATCCGTCAGCTTACCGACCAG GACAGAGAGGCATTTCTTAATGCCGTGGAAGCGATCTACCGTTTGCCAAC GGCCCAAGGAAGGGCGATTTACGGAAAAGAGTACAGAGTGAGATGTTGGT GA
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Coding sequence (CDS) from alignment at F-distichus_contig10118:5920..6921+

>mRNA_F-distichus_contig10118.92.1 ID=mRNA_F-distichus_contig10118.92.1|Name=mRNA_F-distichus_contig10118.92.1|organism=Fucus distichus monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at F-distichus_contig10118:5920..6921+ (Fucus distichus monoicous)
ACCCTCACAGCCTCAAGCAAGATCGGCGATCCAACGAACGACGTCTTTGT
TTGGAGAGTTTGGGACGACAAAAGCACGGTGTTGGAGGGAAGACCCTCAC
AGCCTCAAGCAAGATCGGCGATCCAACGAACGACGTCTTTGTTTGGAGAG
TTTGGGACGACAAAAGCACGGTGTTGGAGGGAAGAGAGTTGACATACGTG
TTCAAGACAGTGGGACGCCAGCGGGTTACTCTTAGCCAGACTGTGGTGAC
CACGGGCAACACATACTACATGGAAGCGTACGTCATGGTCAAGAGAGTTG
ACATACGTGTTCAAGACAGTGGGACGCCAGCGGGTTACTCTTAGCCAGAC
TGTGGTGACCACGGGCAACACATACTACATGGAAGCGTACGTCATGGTCA
AGTATGTGCGCCGAGAAATCCGTCAGCTTACCGACCAGGACAGAGAGGCA
TTTCTTAATGCCGTGGAAGCGATCTACCGTTTGCCAACGGCCCAAGGAAG
GGCGATTTACGGAAAAGAGTACAGAGTGAGATGTTGGTGATATGTGCGCC
GAGAAATCCGTCAGCTTACCGACCAGGACAGAGAGGCATTTCTTAATGCC
GTGGAAGCGATCTACCGTTTGCCAACGGCCCAAGGAAGGGCGATTTACGG
AAAAGAGTACAGAGTGAGATGTTGGTGA
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