mRNA_F-distichus_contig10112.87.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10112.87.1
Unique NamemRNA_F-distichus_contig10112.87.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig10112.87.1 vs. uniprot
Match: D8LNX3_ECTSI (Tubulin folding cofactor D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNX3_ECTSI)

HSP 1 Score: 248 bits (632), Expect = 5.190e-73
Identity = 119/147 (80.95%), Postives = 133/147 (90.48%), Query Frame = 1
Query:   16 LKRVTAALEKYLEQPHLLDPHLEDMMSVVMGRAKELVMEREVAVLADAGCGSRDRPIETFPFQVFTCPQLQDLFCVIYQLCRARGSKAVVRLMPHEAAELEPVIHALEAQDTEDHSTWETRYGLMLWLAMLSLVPFDIDTMDSGLAE 456
            LK V  ALEKYLEQPHLLDPHLEDMM+VVMGRAKELV+ERE  VLA++G GSR RP E FPFQVF CPQL  +FCVIYQLCR RG+KAVVRLMPHEAA+LEPVIHAL+AQDT+D+STWETRYGL+LWL+MLSLVPFDIDT+DSGL +
Sbjct:   21 LKAVKGALEKYLEQPHLLDPHLEDMMAVVMGRAKELVVEREEQVLAESGGGSRGRPGEAFPFQVFICPQLHSMFCVIYQLCRVRGAKAVVRLMPHEAADLEPVIHALQAQDTDDYSTWETRYGLLLWLSMLSLVPFDIDTIDSGLRD 167          
BLAST of mRNA_F-distichus_contig10112.87.1 vs. uniprot
Match: K3WX30_GLOUD (TFCD_C domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WX30_GLOUD)

HSP 1 Score: 145 bits (365), Expect = 4.450e-37
Identity = 72/149 (48.32%), Postives = 102/149 (68.46%), Query Frame = 1
Query:   19 KRVTAALEKYLEQPHLLDPHLEDMMSVVMGRAKE----LVMEREVAVLADAGCGSRDRP-IETFPFQVFTCPQLQDLFCVIYQLCRARGSKAVVRLMPHEAAELEPVIHALEAQDTEDHSTWETRYGLMLWLAMLSLVPFDIDTMDSGL 450
            K +TA L++YLEQ HLLDP L +++  +M + K     +V+EREV     A    +D   +  FPFQV+  P+L  LF +IY LC+ RG K +V+L+PHE ++ EP +  L++QD  DHSTWETRY L+LWL+ML LVPFD++T+DS +
Sbjct:   85 KTITAILDRYLEQSHLLDPFLRELVDPIMVQVKRVIATIVLEREVEA---ARLNEQDPTMVVAFPFQVYKNPKLHKLFQLIYHLCKVRGFKTIVKLLPHEVSDFEPTLMLLQSQDRTDHSTWETRYVLLLWLSMLCLVPFDLNTIDSSI 230          
BLAST of mRNA_F-distichus_contig10112.87.1 vs. uniprot
Match: G4Z932_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z932_PHYSP)

HSP 1 Score: 141 bits (356), Expect = 7.980e-37
Identity = 68/141 (48.23%), Postives = 93/141 (65.96%), Query Frame = 1
Query:   25 VTAALEKYLEQPHLLDPHLEDMMSVVMGRAKELVMEREVAVLADAGCGSRDRPIETFPFQVFTCPQLQDLFCVIYQLCRARGSKAVVRLMPHEAAELEPVIHALEAQDTEDHSTWETRYGLMLWLAMLSLVPFDIDTMDSG 447
            VT+ L+KYLEQ HLLDP L +M+  ++   K ++ ER  A   D   G        FP QV+  P+L  LF ++Y LC+ RG K VV+L+PHE ++ EP +  L++QD  DHS WETRY L+LWL+ML LVPFD++T+DS 
Sbjct:   54 VTSTLDKYLEQSHLLDPFLHEMLDPIVREIKRVMAERAQAQAQDQAEGV------AFPCQVYRNPRLHKLFQLVYHLCKVRGYKTVVKLLPHEVSDFEPTLQLLQSQDRADHSAWETRYVLLLWLSMLCLVPFDLNTIDSA 188          
BLAST of mRNA_F-distichus_contig10112.87.1 vs. uniprot
Match: A0A7S2WC38_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WC38_9STRA)

HSP 1 Score: 144 bits (362), Expect = 1.130e-36
Identity = 71/144 (49.31%), Postives = 97/144 (67.36%), Query Frame = 1
Query:   16 LKRVTAALEKYLEQPHLLDPHLEDMMSVVMGRAKELVMEREVAVLADAGCGSRDRPIETFPFQVFTCPQLQDLFCVIYQLCRARGSKAVVRLMPHEAAELEPVIHALEAQDTEDHSTWETRYGLMLWLAMLSLVPFDIDTMDSG 447
            L R  A L+KY EQ HL+DP LE+++  +M  AK +V  RE   L  +G       + +FPFQ++    L  +F  +Y LC+ RG KAVV+ +PHE AELEP +  L+ QD++DHSTWETRY L+LWL+ML L+PFD+DT+DS 
Sbjct:   57 LDRFVAILDKYQEQSHLIDPFLEEIVGTLMESAKTVVQLREKDRLEASG------GVSSFPFQIYRNNGLHLVFTALYTLCKVRGYKAVVKQLPHEVAELEPTLLMLQCQDSKDHSTWETRYSLLLWLSMLVLIPFDLDTVDSN 194          
BLAST of mRNA_F-distichus_contig10112.87.1 vs. uniprot
Match: A0A2R5GKZ4_9STRA (Tubulin-specific chaperone D n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GKZ4_9STRA)

HSP 1 Score: 143 bits (361), Expect = 1.540e-36
Identity = 74/156 (47.44%), Postives = 101/156 (64.74%), Query Frame = 1
Query:    1 ERKRLLKRVTAALEKYLEQPHLLDPHLEDMMSVVMGRAKELVMEREVAVLADAGCGSRDRPIETFPFQVFTCPQLQDLFCVIYQLCRARGSKAVVRLMPHEAAELEPVIHALEAQDTEDHSTWETRYGLMLWLAMLSLVPFDIDTMDSGLAERHIG 468
            E +R L  V   LEKY EQ HLLD HLED+++ +M   K ++  RE    A    G  D  + +FPFQV+    LQ +   +Y LC+ RG KAVV+ +PHE A+LEP +  L+ QD +D++TWETRY L+LWL+ML L+PFD++T+DS LA    G
Sbjct:   60 EAERALDGVQKILEKYQEQAHLLDRHLEDLVTRIMDAVKHVLRLREADEEARPSRGE-DSAVNSFPFQVYRNAGLQLVLKALYLLCKVRGYKAVVKQLPHEVADLEPTLWLLQCQDAKDYTTWETRYSLLLWLSMLVLIPFDLETVDSSLAAGTTG 214          
BLAST of mRNA_F-distichus_contig10112.87.1 vs. uniprot
Match: A0A7S2WVP9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVP9_9STRA)

HSP 1 Score: 137 bits (344), Expect = 2.120e-36
Identity = 70/146 (47.95%), Postives = 91/146 (62.33%), Query Frame = 1
Query:   22 RVTAALEKYLEQPHLLDPHLEDMMSVVMGRAKELVME---REVAVLADAGCGSRDRPIETFPFQVFTCPQLQDLFCVIYQLCRARGSKAVVRLMPHEAAELEPVIHALEAQDTEDHSTWETRYGLMLWLAMLSLVPFDIDTMDSGL 450
            R    +EKY EQ  LLDPHLE MM+ + GRA  ++     R +A   D G        E FPFQ    PQL  +F ++YQLCR RG K V +   HE ++LEP +  L++QD  DH +WETRYGL+LWL+ML +VPFDI T+DS +
Sbjct:   66 RFVKIIEKYQEQSTLLDPHLERMMAPLTGRAGAIIRGFHGRHLAQREDGG--------EAFPFQCAREPQLHCIFQIVYQLCRCRGQKCVAKFFSHEVSDLEPTLFMLQSQDRHDHGSWETRYGLLLWLSMLVMVPFDIYTIDSSV 203          
BLAST of mRNA_F-distichus_contig10112.87.1 vs. uniprot
Match: A0A835ZJS0_9STRA (Tubulin folding cofactor D n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJS0_9STRA)

HSP 1 Score: 141 bits (356), Expect = 7.210e-36
Identity = 73/148 (49.32%), Postives = 98/148 (66.22%), Query Frame = 1
Query:    4 RKRLLKRVTAALEKYLEQPHLLDPHLEDMMSVVMGRAKELVMEREVAVLADAGCGSRDRPIETFPFQVFTCPQLQDLFCVIYQLCRARGSKAVVRLMPHEAAELEPVIHALEAQDTEDHSTWETRYGLMLWLAMLSLVPFDIDTMDSG 447
            R R +++V A LEKY+EQ +LLDPHLE +MSV+MGR K ++   E     ++G G ++         V    QL  L   +YQLCR RG+K V+RL+PH+AA+LEP + A + QD  D +TW +RY L+LWLAML LVPFDI T+DS 
Sbjct:   55 RSRYVEQVQAILEKYMEQSNLLDPHLEAIMSVIMGRVKAILASEE-----ESGAGEQEG--------VCRSAQLHALLACVYQLCRVRGAKTVMRLLPHDAADLEPALRAAQRQDRADAATWTSRYALLLWLAMLCLVPFDIATIDSS 189          
BLAST of mRNA_F-distichus_contig10112.87.1 vs. uniprot
Match: D0NUW3_PHYIT (Tubulin-specific chaperone D, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NUW3_PHYIT)

HSP 1 Score: 140 bits (352), Expect = 2.480e-35
Identity = 66/141 (46.81%), Postives = 94/141 (66.67%), Query Frame = 1
Query:   25 VTAALEKYLEQPHLLDPHLEDMMSVVMGRAKELVMEREVAVLADAGCGSRDRPIETFPFQVFTCPQLQDLFCVIYQLCRARGSKAVVRLMPHEAAELEPVIHALEAQDTEDHSTWETRYGLMLWLAMLSLVPFDIDTMDSG 447
            V+  L++YLEQ HLLDP+L ++++ ++   K ++ ER      D            FP QV+  P+L  LF +IYQLC+ RG K VV+L+PHE ++ EP +H L++QD  DHS WETRY L+LWL+ML LVPFD++T+DS 
Sbjct:   51 VSQILDRYLEQSHLLDPYLHEIVNPLVTEIKRVMTERTQRAKTDDAVA--------FPCQVYRNPRLHKLFQIIYQLCKVRGYKTVVKLLPHEVSDFEPTLHLLQSQDRTDHSAWETRYVLLLWLSMLCLVPFDLNTIDSS 183          
BLAST of mRNA_F-distichus_contig10112.87.1 vs. uniprot
Match: A0A6A4EQ60_9STRA (Tubulin-specific chaperone D n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A4EQ60_9STRA)

HSP 1 Score: 139 bits (350), Expect = 4.620e-35
Identity = 68/143 (47.55%), Postives = 92/143 (64.34%), Query Frame = 1
Query:   25 VTAALEKYLEQPHLLDPHLEDMMSVVMGRAKELVMEREVAVLADAGCGSRDRPIETFPFQVFTCPQLQDLFCVIYQLCRARGSKAVVRLMPHEAAELEPVIHALEAQDTEDHSTWETRYGLMLWLAMLSLVPFDIDTMDSGLA 453
            VT  L+KYLEQ HLLDP+L +M+  ++   K ++ E+  A     G          FP QV+  P+L  LF V+Y LC+ RG K VV+L+PHE ++ EP +  L++QD  DHS WETRY L+LWL+ML LVPFD+ T+DS  A
Sbjct:   53 VTNTLDKYLEQSHLLDPYLHEMLDPIVKEIKRVMAEKAQAEADAEGVA--------FPCQVYRNPRLHKLFQVVYHLCKVRGYKTVVKLLPHEVSDFEPTLQLLQSQDRTDHSAWETRYVLLLWLSMLCLVPFDLTTIDSSSA 187          
BLAST of mRNA_F-distichus_contig10112.87.1 vs. uniprot
Match: A0A5D6XM80_9STRA (TFCD_C domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XM80_9STRA)

HSP 1 Score: 138 bits (348), Expect = 8.580e-35
Identity = 70/161 (43.48%), Postives = 95/161 (59.01%), Query Frame = 1
Query:   25 VTAALEKYLEQPHLLDPHLEDMMSVVMGRAKELVMEREVAVLADAGCGSRDRPIETFPFQVFTCPQLQDLFCVIYQLCRARGSKAVVRLMPHEAAELEPVIHALEAQDTEDHSTWETRYGLMLWLAMLSLVPFDIDTMDSGL--AERHIGELVETEADALT 501
            +   L++YLEQ HLLDP L ++   +M   K  V          A C         FPFQV+  P+L  L  ++Y LC+ RG K VV+L+PHEA++ EP +  L++QD  DHSTWETRY L+LWL+ML LVPFD++T+DS +  A    G  +    D LT
Sbjct:   64 IATILDRYLEQAHLLDPFLRELTEPIMAHVKRAV------AATGAACEPPAAANVAFPFQVYRNPRLHKLLQLVYHLCKVRGYKTVVKLLPHEASDFEPTLRLLQSQDRSDHSTWETRYVLLLWLSMLCLVPFDLNTIDSSIPGAGAAAGGAIAIVTDTLT 218          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10112.87.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNX3_ECTSI5.190e-7380.95Tubulin folding cofactor D n=1 Tax=Ectocarpus sili... [more]
K3WX30_GLOUD4.450e-3748.32TFCD_C domain-containing protein n=1 Tax=Globispor... [more]
G4Z932_PHYSP7.980e-3748.23Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A7S2WC38_9STRA1.130e-3649.31Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A2R5GKZ4_9STRA1.540e-3647.44Tubulin-specific chaperone D n=1 Tax=Hondaea ferme... [more]
A0A7S2WVP9_9STRA2.120e-3647.95Hypothetical protein (Fragment) n=2 Tax=Rhizochrom... [more]
A0A835ZJS0_9STRA7.210e-3649.32Tubulin folding cofactor D n=1 Tax=Tribonema minus... [more]
D0NUW3_PHYIT2.480e-3546.81Tubulin-specific chaperone D, putative n=2 Tax=Phy... [more]
A0A6A4EQ60_9STRA4.620e-3547.55Tubulin-specific chaperone D n=5 Tax=Phytophthora ... [more]
A0A5D6XM80_9STRA8.580e-3543.48TFCD_C domain-containing protein n=1 Tax=Pythium b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10112contigF-distichus_contig10112:8179..9070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score249.2
Seed ortholog evalue1.3e-63
Seed eggNOG ortholog2880.D8LNX3
KEGG koko:K21767
Hectar predicted targeting categoryother localisation
EggNOG free text desc.post-chaperonin tubulin folding pathway
EggNOG OGsCOG2116@1,KOG1943@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons3
Model size502
Cds size501
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10112.87.1prot_F-distichus_contig10112.87.1Fucus distichus monoicouspolypeptideF-distichus_contig10112 8179..9070 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928927.7730951-CDS-F-distichus_contig10112:8178..83341622928927.7730951-CDS-F-distichus_contig10112:8178..8334Fucus distichus monoicousCDSF-distichus_contig10112 8179..8334 -
1690885069.1538918-CDS-F-distichus_contig10112:8178..83341690885069.1538918-CDS-F-distichus_contig10112:8178..8334Fucus distichus monoicousCDSF-distichus_contig10112 8179..8334 -
1622928927.7825093-CDS-F-distichus_contig10112:8495..86361622928927.7825093-CDS-F-distichus_contig10112:8495..8636Fucus distichus monoicousCDSF-distichus_contig10112 8496..8636 -
1690885069.1701443-CDS-F-distichus_contig10112:8495..86361690885069.1701443-CDS-F-distichus_contig10112:8495..8636Fucus distichus monoicousCDSF-distichus_contig10112 8496..8636 -
1622928927.79256-CDS-F-distichus_contig10112:8866..90701622928927.79256-CDS-F-distichus_contig10112:8866..9070Fucus distichus monoicousCDSF-distichus_contig10112 8867..9070 -
1690885069.1822326-CDS-F-distichus_contig10112:8866..90701690885069.1822326-CDS-F-distichus_contig10112:8866..9070Fucus distichus monoicousCDSF-distichus_contig10112 8867..9070 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10112.87.1

>prot_F-distichus_contig10112.87.1 ID=prot_F-distichus_contig10112.87.1|Name=mRNA_F-distichus_contig10112.87.1|organism=Fucus distichus monoicous|type=polypeptide|length=167bp
ERKRLLKRVTAALEKYLEQPHLLDPHLEDMMSVVMGRAKELVMEREVAVL
ADAGCGSRDRPIETFPFQVFTCPQLQDLFCVIYQLCRARGSKAVVRLMPH
EAAELEPVIHALEAQDTEDHSTWETRYGLMLWLAMLSLVPFDIDTMDSGL
AERHIGELVETEADALT
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mRNA from alignment at F-distichus_contig10112:8179..9070-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10112.87.1 ID=mRNA_F-distichus_contig10112.87.1|Name=mRNA_F-distichus_contig10112.87.1|organism=Fucus distichus monoicous|type=mRNA|length=892bp|location=Sequence derived from alignment at F-distichus_contig10112:8179..9070- (Fucus distichus monoicous)
GAGCGCAAACGCCTCCTTAAGCGTGTAACTGCGGCGCTGGAGAAATACCT GGAGCAGCCACATCTTCTCGATCCTCACCTGGAAGACATGATGTCGGTCG TAATGGGGAGAGCAAAGGAGTTAGTAATGGAGAGAGAAGTCGCGGTACTC GCAGACGCGGGTTGCGGGTCAAGGGACCGCCCGATCGAGACATTCCCGTT TCAGGTGTTCGACCTACAGCAGGAAAGAACGTATCTCGGCATGTACTGAC TGATTGATGTTCACCCACGCAGGGTAACTTGTGGACAAACAGCCCACGGT TTATGAAGCGAGGCGAGGAGTCGGCGCTAGTCCGAACACCGTACCCCGCG CCCCGCCCTTACATCCCTCGCTTACAGGAGGAAACCCTCCACTGCGTGAG TGTCGACATTGGCCTCTCCACATCCCCTGCGCAGGTGTTCACCTGCCCGC AGCTCCAGGACTTGTTCTGTGTGATCTATCAACTATGCCGTGCGAGAGGA TCCAAGGCCGTGGTGCGGCTCATGCCTCACGAAGCAGCCGAGCTGGAGCC GGTCATCCACGCCCTCGAAGCACAGGTGAGACACCTCCCCCCCCCCCCCA ACCTACACACGACAATCATTGATTCCTCGTTGGGAGGACATATGTTATAA ATGCACACTTAGGACTGGATTGCGCGGTTATATGCGGTTTCATTGAATAT ACATACACTACGAAACCCCGCATAAAACACGCACAGGACACCGAAGACCA CTCCACCTGGGAGACCCGTTACGGCCTGATGCTGTGGCTCGCCATGCTAT CGCTCGTGCCCTTCGACATCGACACGATGGACTCCGGGTTAGCCGAGAGG CACATCGGCGAGTTGGTGGAGACGGAAGCAGACGCTTTAACT
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Coding sequence (CDS) from alignment at F-distichus_contig10112:8179..9070-

>mRNA_F-distichus_contig10112.87.1 ID=mRNA_F-distichus_contig10112.87.1|Name=mRNA_F-distichus_contig10112.87.1|organism=Fucus distichus monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at F-distichus_contig10112:8179..9070- (Fucus distichus monoicous)
GAGCGCAAACGCCTCCTTAAGCGTGTAACTGCGGCGCTGGAGAAATACCT
GGAGCAGCCACATCTTCTCGATCCTCACCTGGAAGACATGATGTCGGTCG
TAATGGGGAGAGCAAAGGAGTTAGTAATGGAGAGAGAAGTCGCGGTACTC
GCAGACGCGGGTTGCGGGTCAAGGGACCGCCCGATCGAGACATTCCCGTT
TCAGGAGCGCAAACGCCTCCTTAAGCGTGTAACTGCGGCGCTGGAGAAAT
ACCTGGAGCAGCCACATCTTCTCGATCCTCACCTGGAAGACATGATGTCG
GTCGTAATGGGGAGAGCAAAGGAGTTAGTAATGGAGAGAGAAGTCGCGGT
ACTCGCAGACGCGGGTTGCGGGTCAAGGGACCGCCCGATCGAGACATTCC
CGTTTCAGGTGTTCACCTGCCCGCAGCTCCAGGACTTGTTCTGTGTGATC
TATCAACTATGCCGTGCGAGAGGATCCAAGGCCGTGGTGCGGCTCATGCC
TCACGAAGCAGCCGAGCTGGAGCCGGTCATCCACGCCCTCGAAGCACAGG
TGTTCACCTGCCCGCAGCTCCAGGACTTGTTCTGTGTGATCTATCAACTA
TGCCGTGCGAGAGGATCCAAGGCCGTGGTGCGGCTCATGCCTCACGAAGC
AGCCGAGCTGGAGCCGGTCATCCACGCCCTCGAAGCACAGGACACCGAAG
ACCACTCCACCTGGGAGACCCGTTACGGCCTGATGCTGTGGCTCGCCATG
CTATCGCTCGTGCCCTTCGACATCGACACGATGGACTCCGGGTTAGCCGA
GAGGCACATCGGCGAGTTGGTGGAGACGGAAGCAGACGCTTTAACTGACA
CCGAAGACCACTCCACCTGGGAGACCCGTTACGGCCTGATGCTGTGGCTC
GCCATGCTATCGCTCGTGCCCTTCGACATCGACACGATGGACTCCGGGTT
AGCCGAGAGGCACATCGGCGAGTTGGTGGAGACGGAAGCAGACGCTTTAA
CT
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