mRNA_F-distichus_contig101065.84.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig101065.84.1
Unique NamemRNA_F-distichus_contig101065.84.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig101065.84.1 vs. uniprot
Match: D7G779_ECTSI (L51_S25_CI-B8 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G779_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 7.290e-50
Identity = 76/96 (79.17%), Postives = 87/96 (90.62%), Query Frame = 1 
Query:    1 MASRGVFQLRKLTVKYCERSGSSRGARDFIRHCILDFANKTPAAEVVTELRPGKHPYIMGEYLTGSSKVIGVKNITPKEIMDYAMMLRNTSGRKVR 288
            MA+RGVFQLRKLT+KYC+ SGSS+GAR+FIRH I++FAN TPAAEVVTELRPGKHPYIMG+Y+TG  K IG+KNI P EIMDYAMMLRN+SG KVR
Sbjct:    1 MATRGVFQLRKLTLKYCDHSGSSKGAREFIRHRIVEFANNTPAAEVVTELRPGKHPYIMGDYVTGEVKTIGIKNIAPGEIMDYAMMLRNSSGHKVR 96
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BLAST of mRNA_F-distichus_contig101065.84.1 vs. uniprot
Match: A0A5J4YAV1_9CHLO (Mitochondrial ribosomal L51 S25 CI-B8 family n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YAV1_9CHLO)

HSP 1 Score: 103 bits (258), Expect = 1.090e-26
Identity = 49/94 (52.13%), Postives = 67/94 (71.28%), Query Frame = 1 
Query:    1 MASRGVFQLRKLTVKYCERSGSSRGARDFIRHCILDFANKTPAAEVVTELRPGKHPYIMGEYLTGSSKVIGVKNITPKEIMDYAMMLRNTSGRK 282
            M  RGV+QL++LTV +CE SGSSRGAR+F++  +  FA      EV  E++PG+HP + GEY  GSS+ +GVKN   +E++  AMMLR+T GRK
Sbjct:    1 MTQRGVWQLQRLTVSFCEHSGSSRGAREFVKSFLPLFAEDNKHIEVKAEVKPGRHPCLRGEYRNGSSRQVGVKNEPQEELLRQAMMLRSTIGRK 94
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BLAST of mRNA_F-distichus_contig101065.84.1 vs. uniprot
Match: A0A835ZEX9_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEX9_9STRA)

HSP 1 Score: 100 bits (248), Expect = 4.360e-25
Identity = 46/96 (47.92%), Postives = 64/96 (66.67%), Query Frame = 1 
Query:    1 MASRGVFQLRKLTVKYCERSGSSRGARDFIRHCILDFANKTPAAEVVTELRPGKHPYIMGEYLTGSSKVIGVKNITPKEIMDYAMMLRNTSGRKVR 288
            MA+RGV QL+++ ++YC+  GSS+G RDFI   ++ FA   P  E++TE+R  +HP I  +YLTG  K +GVKN  P  I D+   LR T+GRK R
Sbjct:    1 MATRGVMQLQRIHIRYCDWGGSSQGMRDFIGRELVAFAKAVPHCEIITEVRRNRHPIIRADYLTGIPKTLGVKNEAPSAIRDFLHRLRTTTGRKQR 96
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BLAST of mRNA_F-distichus_contig101065.84.1 vs. uniprot
Match: A0A7S2W7Q4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W7Q4_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.040e-24
Identity = 51/96 (53.12%), Postives = 64/96 (66.67%), Query Frame = 1 
Query:    1 MASRGVFQLRKLTVKYCERSGSSRGARDFIRHC-ILDFANKTPAAEVVTELRPGKHPYIMGEYLTGSSKVIGVKNITPKEIMDYAMMLRNTSGRKV 285
            MA+RGV QL+KL + YCE  GSS   R+FI    I+ FA K P+  V+ +LR G HPYI G+YLTG+SK I +KN T   I+    ML NTSGRK+
Sbjct:   31 MATRGVKQLQKLRIVYCEHGGSSASIREFISSGKIVSFAEKNPSVTVIAQLRNGNHPYIKGQYLTGNSKQICIKNETVPRIVKVVHMLNNTSGRKI 126
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BLAST of mRNA_F-distichus_contig101065.84.1 vs. uniprot
Match: I0YX17_COCSC (L51_S25_CI-B8 domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YX17_COCSC)

HSP 1 Score: 99.0 bits (245), Expect = 1.350e-24
Identity = 45/98 (45.92%), Postives = 65/98 (66.33%), Query Frame = 1 
Query:    1 MASRGVFQLRKLTVKYCERSGSSRGARDFIRHCILDFANKTPAAEVVTELRPGKHPYIMGEYLTGSSKVIGVKNITPKEIMDYAMMLRNTSGRKVRVR 294
            MA  GV+QLRKLT+ YC  SGSSRGAR F+   +  F  + P  +V+ +L+PG+HPY+  EY  G  + +GVKN  P  ++ +A+MLR+ +GR   V+
Sbjct:    1 MARLGVWQLRKLTLNYCNISGSSRGARTFVEDYLPTFKQENPHLQVLEDLQPGRHPYLKAEYRNGRVRTVGVKNELPDGVLRHAVMLRSAAGRSTHVK 98
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BLAST of mRNA_F-distichus_contig101065.84.1 vs. uniprot
Match: A0A1S3BXU0_CUCME (54S ribosomal protein L51, mitochondrial n=3 Tax=Magnoliopsida TaxID=3398 RepID=A0A1S3BXU0_CUCME)

HSP 1 Score: 98.2 bits (243), Expect = 1.890e-24
Identity = 49/95 (51.58%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:    1 MASRGVFQLRKLTVKYCERSGSSRGARDFIRHCILDFANKTPAAEVVTELRPGKHPYIMGEYLTGSSKVIGVKNITPKEIMDYAMMLRNTSGRKV 285
            MA RGV+QL+KL V YC+  GSSRG R F+   +  F  K P  EVVTEL  G+HPY+ G Y + +++V+ VKN+ P+EI   A  LRN+ GRKV
Sbjct:    1 MALRGVWQLKKLVVSYCDWGGSSRGIRAFMESQMPAFKEKNPQLEVVTELNRGQHPYLKGFYKSNNNRVVCVKNMDPEEIHSCATRLRNSLGRKV 95
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BLAST of mRNA_F-distichus_contig101065.84.1 vs. uniprot
Match: A9S2L6_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9S2L6_PHYPA)

HSP 1 Score: 97.4 bits (241), Expect = 3.810e-24
Identity = 47/95 (49.47%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:    1 MASRGVFQLRKLTVKYCERSGSSRGARDFIRHCILDFANKTPAAEVVTELRPGKHPYIMGEYLTGSSKVIGVKNITPKEIMDYAMMLRNTSGRKV 285
            MA RGV+QL+KL V +C+ SGSS GAR+F+           P  EV T+L PG+HPY+ G YL  + +V+ VKN   +EI+  AM LRN++GRKV
Sbjct:    1 MAVRGVWQLQKLIVCFCDHSGSSAGAREFVARIFPTLQKNNPQFEVATQLVPGQHPYLRGLYLNKNDRVVDVKNKNAEEILTQAMRLRNSTGRKV 95
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BLAST of mRNA_F-distichus_contig101065.84.1 vs. uniprot
Match: B8LDZ0_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LDZ0_THAPS)

HSP 1 Score: 97.4 bits (241), Expect = 5.610e-24
Identity = 46/97 (47.42%), Postives = 65/97 (67.01%), Query Frame = 1 
Query:    1 MASRGVFQLRKLTVKYCERSGSSRGARDFIRHC--ILDFANKTPAAEVVTELRPGKHPYIMGEYLTGSSKVIGVKNITPKEIMDYAMMLRNTSGRKV 285
            MA+RG+ QL+KL ++YCE  GSS   R ++++   +L+FA   P  +++ + R G HPYI GEY+TG SK + VKN T K + D    LRNTSGRK+
Sbjct:    1 MATRGIQQLQKLRIRYCEIGGSSATVRSYLQNSPHLLNFAKANPQIQIIVKPRNGHHPYIQGEYITGQSKQVCVKNTTEKRVKDVMDHLRNTSGRKI 97
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BLAST of mRNA_F-distichus_contig101065.84.1 vs. uniprot
Match: A0A0D2USP7_GOSRA (L51_S25_CI-B8 domain-containing protein n=11 Tax=Gossypium TaxID=3633 RepID=A0A0D2USP7_GOSRA)

HSP 1 Score: 97.8 bits (242), Expect = 6.260e-24
Identity = 49/95 (51.58%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:    1 MASRGVFQLRKLTVKYCERSGSSRGARDFIRHCILDFANKTPAAEVVTELRPGKHPYIMGEYLTGSSKVIGVKNITPKEIMDYAMMLRNTSGRKV 285
            MA RGV+QL+KL V YC+  GSSRG R F+   +  F  K P  EVVTEL  G+HP++ G Y   + +V+ VKN+TP++I+ YA  LRN  GRKV
Sbjct:   32 MALRGVWQLKKLIVSYCDWGGSSRGIRAFMESELPTFKEKNPQLEVVTELIRGQHPHLKGFYKNKNERVVCVKNMTPEDILLYATRLRNALGRKV 126
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BLAST of mRNA_F-distichus_contig101065.84.1 vs. uniprot
Match: A0A176VTC2_MARPO (L51_S25_CI-B8 domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VTC2_MARPO)

HSP 1 Score: 96.7 bits (239), Expect = 7.660e-24
Identity = 44/95 (46.32%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:    1 MASRGVFQLRKLTVKYCERSGSSRGARDFIRHCILDFANKTPAAEVVTELRPGKHPYIMGEYLTGSSKVIGVKNITPKEIMDYAMMLRNTSGRKV 285
            MA RGV+QL+KL + +C+ SGSSRGAR+F+   +  F  + P  EV+TEL  G+HP++ G +   + +V+ VKN+  +E+   AM LRN++GRKV
Sbjct:    1 MAVRGVWQLKKLVLYFCDHSGSSRGAREFVESILPKFKLENPQLEVLTELHRGRHPHLKGHFANKNERVVDVKNLDSQEVALQAMRLRNSTGRKV 95
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101065.84.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G779_ECTSI7.290e-5079.17L51_S25_CI-B8 domain-containing protein n=2 Tax=Ec... [more]
A0A5J4YAV1_9CHLO1.090e-2652.13Mitochondrial ribosomal L51 S25 CI-B8 family n=1 T... [more]
A0A835ZEX9_9STRA4.360e-2547.92Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
A0A7S2W7Q4_9STRA1.040e-2453.13Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
I0YX17_COCSC1.350e-2445.92L51_S25_CI-B8 domain-containing protein n=1 Tax=Co... [more]
A0A1S3BXU0_CUCME1.890e-2451.5854S ribosomal protein L51, mitochondrial n=3 Tax=M... [more]
A9S2L6_PHYPA3.810e-2449.47Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
B8LDZ0_THAPS5.610e-2447.42Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A0D2USP7_GOSRA6.260e-2451.58L51_S25_CI-B8 domain-containing protein n=11 Tax=G... [more]
A0A176VTC2_MARPO7.660e-2446.32L51_S25_CI-B8 domain-containing protein n=2 Tax=Ma... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101065contigF-distichus_contig101065:723..1019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.9
Seed ortholog evalue7.5e-38
Seed eggNOG ortholog2880.D7G779
Preferred nameMRPL43
KEGG koko:K17424
Hectar predicted targeting categorymitochondrion
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsKOG3445@1,KOG3445@2759
Ec32 ortholog descriptionRibosomal protein/NADH dehydrogenase domain
Ec32 orthologEc-01_010750.1
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko03011
Exons1
Model size297
Cds size297
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928927.5848432-CDS-F-distichus_contig101065:722..10191622928927.5848432-CDS-F-distichus_contig101065:722..1019Fucus distichus monoicousCDSF-distichus_contig101065 723..1019 +
1690885069.0261197-CDS-F-distichus_contig101065:722..10191690885069.0261197-CDS-F-distichus_contig101065:722..1019Fucus distichus monoicousCDSF-distichus_contig101065 723..1019 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101065.84.1prot_F-distichus_contig101065.84.1Fucus distichus monoicouspolypeptideF-distichus_contig101065 723..1019 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig101065.84.1

>prot_F-distichus_contig101065.84.1 ID=prot_F-distichus_contig101065.84.1|Name=mRNA_F-distichus_contig101065.84.1|organism=Fucus distichus monoicous|type=polypeptide|length=99bp
MASRGVFQLRKLTVKYCERSGSSRGARDFIRHCILDFANKTPAAEVVTEL
RPGKHPYIMGEYLTGSSKVIGVKNITPKEIMDYAMMLRNTSGRKVRVR*
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mRNA from alignment at F-distichus_contig101065:723..1019+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig101065.84.1 ID=mRNA_F-distichus_contig101065.84.1|Name=mRNA_F-distichus_contig101065.84.1|organism=Fucus distichus monoicous|type=mRNA|length=297bp|location=Sequence derived from alignment at F-distichus_contig101065:723..1019+ (Fucus distichus monoicous)
ATGGCTTCTCGCGGAGTATTTCAGCTCCGCAAGTTAACAGTGAAGTACTG
CGAACGCAGCGGAAGCAGCAGAGGCGCCCGGGACTTCATTCGGCATTGCA
TCCTGGATTTTGCTAACAAGACTCCCGCTGCCGAAGTTGTAACCGAGTTG
AGACCAGGGAAGCATCCATACATAATGGGCGAGTACCTGACTGGGAGCAG
CAAGGTGATAGGTGTCAAAAACATTACTCCGAAGGAGATCATGGACTACG
CGATGATGCTGAGGAACACGAGCGGGCGAAAGGTACGAGTGCGGTAG
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Coding sequence (CDS) from alignment at F-distichus_contig101065:723..1019+

>mRNA_F-distichus_contig101065.84.1 ID=mRNA_F-distichus_contig101065.84.1|Name=mRNA_F-distichus_contig101065.84.1|organism=Fucus distichus monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at F-distichus_contig101065:723..1019+ (Fucus distichus monoicous)
ATGGCTTCTCGCGGAGTATTTCAGCTCCGCAAGTTAACAGTGAAGTACTG
CGAACGCAGCGGAAGCAGCAGAGGCGCCCGGGACTTCATTCGGCATTGCA
TCCTGGATTTTGCTAACAAGACTCCCGCTGCCGAAGTTGTAACCGAGTTG
AGACCAGGGAAGCATCCATACATAATGGGCGAGTACCTGACTGGGAGCAG
CAAGGTGATAGGTGTCAAAAACATTACTCCGAAGGAGATCATGGACTACG
CGATGATGCTGAGGAACACGAGCGGGCGAAAGGTACGAGTGCGGTAGATG
GCTTCTCGCGGAGTATTTCAGCTCCGCAAGTTAACAGTGAAGTACTGCGA
ACGCAGCGGAAGCAGCAGAGGCGCCCGGGACTTCATTCGGCATTGCATCC
TGGATTTTGCTAACAAGACTCCCGCTGCCGAAGTTGTAACCGAGTTGAGA
CCAGGGAAGCATCCATACATAATGGGCGAGTACCTGACTGGGAGCAGCAA
GGTGATAGGTGTCAAAAACATTACTCCGAAGGAGATCATGGACTACGCGA
TGATGCTGAGGAACACGAGCGGGCGAAAGGTACGAGTGCGGTAG
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