mRNA_F-distichus_contig101064.83.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig101064.83.1
Unique NamemRNA_F-distichus_contig101064.83.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig101064.83.1 vs. uniprot
Match: A0A6H5KMF3_9PHAE (Hist_deacetyl domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMF3_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 2.290e-34
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 1
Query:    1 RNAFCAVRPPGHHAGPRGLVTCGNDMHGSHGFCLLNNVAVGAAYARCVHRHAGVDKVAIIDFDVHHG 201
            RNAFCAVRPPGHHAG RGLVTC ND  GSHGFCLLNNVA+GAAYARCVHRH GV++VAI+DFDVHHG
Sbjct:  680 RNAFCAVRPPGHHAGTRGLVTCANDGTGSHGFCLLNNVAIGAAYARCVHRHTGVERVAIVDFDVHHG 746          
BLAST of mRNA_F-distichus_contig101064.83.1 vs. uniprot
Match: A0A7S1GP53_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GP53_CYCTE)

HSP 1 Score: 118 bits (296), Expect = 3.700e-33
Identity = 52/67 (77.61%), Postives = 60/67 (89.55%), Query Frame = 1
Query:    4 NAFCAVRPPGHHAGPRGLVTCGNDMHG-SHGFCLLNNVAVGAAYARCVHRHAGVDKVAIIDFDVHHG 201
            NAFCAVRPPGHHAGPRG+V C ND  G SHGFCLLNNVA+GAAYARC++R+ G+ K+AI+DFDVHHG
Sbjct:    1 NAFCAVRPPGHHAGPRGIVRCANDPDGGSHGFCLLNNVAIGAAYARCMYRNDGIRKIAIVDFDVHHG 67          
BLAST of mRNA_F-distichus_contig101064.83.1 vs. uniprot
Match: A0A2J7ZSV2_9CHLO (tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZSV2_9CHLO)

HSP 1 Score: 122 bits (305), Expect = 2.120e-32
Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = 1
Query:    1 RNAFCAVRPPGHHAGPRGLVTCGNDMHGSHGFCLLNNVAVGAAYARCVHRHAGVDKVAIIDFDVHHG 201
            RNAFCAVRPPGHHAGP G+V   ND HGSHGFCLL+NVA+GAAYA  VHRHAG+ +VAI+DFDVHHG
Sbjct:  142 RNAFCAVRPPGHHAGPTGVVPAPNDPHGSHGFCLLSNVAIGAAYAMSVHRHAGISRVAIVDFDVHHG 208          
BLAST of mRNA_F-distichus_contig101064.83.1 vs. uniprot
Match: A0A8J9SU04_PHATR (Hypothetical protein (Fragment) n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SU04_PHATR)

HSP 1 Score: 119 bits (297), Expect = 2.350e-32
Identity = 53/68 (77.94%), Postives = 59/68 (86.76%), Query Frame = 1
Query:    1 RNAFCAVRPPGHHAGPRGLVTCGNDMHG-SHGFCLLNNVAVGAAYARCVHRHAGVDKVAIIDFDVHHG 201
            RNAFCAVRPPGHHAGP G+V C ND  G SHGFCLLNNVA+GAAYAR ++RH G+ KVAI+DFDVHHG
Sbjct:   35 RNAFCAVRPPGHHAGPTGIVKCANDPEGGSHGFCLLNNVAIGAAYARSMYRHEGIQKVAIVDFDVHHG 102          
BLAST of mRNA_F-distichus_contig101064.83.1 vs. uniprot
Match: A0A7S0N8J5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0N8J5_9CHLO)

HSP 1 Score: 116 bits (290), Expect = 3.220e-32
Identity = 52/67 (77.61%), Postives = 58/67 (86.57%), Query Frame = 1
Query:    1 RNAFCAVRPPGHHAGPRGLVTCGNDMHGSHGFCLLNNVAVGAAYARCVHRHAGVDKVAIIDFDVHHG 201
            R AFCAVRPPGHHAGP G+V   ND HGSHGFCLL+N+A+GAAYA  VHRHAGV +VAI+DFDVHHG
Sbjct:   38 RAAFCAVRPPGHHAGPGGVVPNDNDPHGSHGFCLLSNIAIGAAYAMHVHRHAGVKRVAILDFDVHHG 104          
BLAST of mRNA_F-distichus_contig101064.83.1 vs. uniprot
Match: A0A7S3Q0M5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q0M5_9STRA)

HSP 1 Score: 125 bits (315), Expect = 4.520e-32
Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 1
Query:    1 RNAFCAVRPPGHHAGPRGLVTCGNDMHGSHGFCLLNNVAVGAAYARCVHRHAGVDKVAIIDFDVHHG 201
            RNAFCAVRPPGHHAGPRG+V C ND  GSHGFCLLNNVA+GAAYARC++R+ G+ KVAIIDFDVHHG
Sbjct:  685 RNAFCAVRPPGHHAGPRGIVKCENDPEGSHGFCLLNNVAIGAAYARCMYRNDGIKKVAIIDFDVHHG 751          
BLAST of mRNA_F-distichus_contig101064.83.1 vs. uniprot
Match: B8C1J3_THAPS (Histone deacetylase 1 HDAC Hda1p n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1J3_THAPS)

HSP 1 Score: 124 bits (310), Expect = 1.710e-31
Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 1
Query:    1 RNAFCAVRPPGHHAGPRGLVTCGNDMHGSHGFCLLNNVAVGAAYARCVHRHAGVDKVAIIDFDVHHG 201
            RNAFCAVRPPGHHAGPRG+VTC ND  GSHGFCLLNNVA+GAAYAR ++R+ G+ KVAIIDFDVHHG
Sbjct:  351 RNAFCAVRPPGHHAGPRGIVTCPNDPDGSHGFCLLNNVAIGAAYARSMYRNDGIKKVAIIDFDVHHG 417          
BLAST of mRNA_F-distichus_contig101064.83.1 vs. uniprot
Match: A0A7S2LK53_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LK53_9STRA)

HSP 1 Score: 123 bits (308), Expect = 3.980e-31
Identity = 53/67 (79.10%), Postives = 61/67 (91.04%), Query Frame = 1
Query:    1 RNAFCAVRPPGHHAGPRGLVTCGNDMHGSHGFCLLNNVAVGAAYARCVHRHAGVDKVAIIDFDVHHG 201
            RNAFCA+RPPGHHAGPRG+VTC ND  GSHGFCLLNN+A+GAAYAR ++R+ G+ KVAIIDFDVHHG
Sbjct:  570 RNAFCAIRPPGHHAGPRGIVTCPNDPDGSHGFCLLNNIAIGAAYARSMYRNDGIKKVAIIDFDVHHG 636          
BLAST of mRNA_F-distichus_contig101064.83.1 vs. uniprot
Match: A0A7S2QZ77_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2QZ77_9STRA)

HSP 1 Score: 122 bits (307), Expect = 5.330e-31
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 1
Query:    1 RNAFCAVRPPGHHAGPRGLVTCGNDMHGSHGFCLLNNVAVGAAYARCVHRHAGVDKVAIIDFDVHHG 201
            RNAFCAVRPPGHHAGPRG+V C ND  GSHGFCLLNNVA+GAAYAR ++R+ G+ KVAIIDFDVHHG
Sbjct:  334 RNAFCAVRPPGHHAGPRGIVKCANDPEGSHGFCLLNNVAIGAAYARSMYRNDGIKKVAIIDFDVHHG 400          
BLAST of mRNA_F-distichus_contig101064.83.1 vs. uniprot
Match: A0A8J4CEM7_9CHLO (Hist_deacetyl domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CEM7_9CHLO)

HSP 1 Score: 122 bits (307), Expect = 5.440e-31
Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 1
Query:    1 RNAFCAVRPPGHHAGPRGLVTCGNDMHGSHGFCLLNNVAVGAAYARCVHRHAGVDKVAIIDFDVHHG 201
            RNAFCAVRPPGHHAGP G+VT  ND HGSHGFC+L+NVA+GAAYA  VHRHAG+ +VAI+DFDVHHG
Sbjct:  528 RNAFCAVRPPGHHAGPCGIVTNPNDSHGSHGFCILSNVAIGAAYAMAVHRHAGIQRVAIVDFDVHHG 594          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101064.83.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMF3_9PHAE2.290e-3486.57Hist_deacetyl domain-containing protein n=2 Tax=Ec... [more]
A0A7S1GP53_CYCTE3.700e-3377.61Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A2J7ZSV2_9CHLO2.120e-3279.10tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like ... [more]
A0A8J9SU04_PHATR2.350e-3277.94Hypothetical protein (Fragment) n=3 Tax=Phaeodacty... [more]
A0A7S0N8J5_9CHLO3.220e-3277.61Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A7S3Q0M5_9STRA4.520e-3282.09Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
B8C1J3_THAPS1.710e-3182.09Histone deacetylase 1 HDAC Hda1p n=1 Tax=Thalassio... [more]
A0A7S2LK53_9STRA3.980e-3179.10Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2QZ77_9STRA5.330e-3180.60Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A8J4CEM7_9CHLO5.440e-3179.10Hist_deacetyl domain-containing protein n=2 Tax=Vo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101064contigF-distichus_contig101064:151..940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue2.6e-26
Seed eggNOG ortholog35128.Thaps268655
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Histone deacetylase domain
EggNOG OGs2XESA@2836,COG0123@1,COG0666@1,KOG1343@2759,KOG4177@2759
COG Functional cat.B
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928927.5461404-CDS-F-distichus_contig101064:150..2641622928927.5461404-CDS-F-distichus_contig101064:150..264Fucus distichus monoicousCDSF-distichus_contig101064 151..264 +
1690885068.9938858-CDS-F-distichus_contig101064:150..2641690885068.9938858-CDS-F-distichus_contig101064:150..264Fucus distichus monoicousCDSF-distichus_contig101064 151..264 +
1622928927.5560799-CDS-F-distichus_contig101064:853..9401622928927.5560799-CDS-F-distichus_contig101064:853..940Fucus distichus monoicousCDSF-distichus_contig101064 854..940 +
1690885069.0081172-CDS-F-distichus_contig101064:853..9401690885069.0081172-CDS-F-distichus_contig101064:853..940Fucus distichus monoicousCDSF-distichus_contig101064 854..940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101064.83.1prot_F-distichus_contig101064.83.1Fucus distichus monoicouspolypeptideF-distichus_contig101064 151..940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig101064.83.1

>prot_F-distichus_contig101064.83.1 ID=prot_F-distichus_contig101064.83.1|Name=mRNA_F-distichus_contig101064.83.1|organism=Fucus distichus monoicous|type=polypeptide|length=67bp
RNAFCAVRPPGHHAGPRGLVTCGNDMHGSHGFCLLNNVAVGAAYARCVHR
HAGVDKVAIIDFDVHHG
back to top

mRNA from alignment at F-distichus_contig101064:151..940+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig101064.83.1 ID=mRNA_F-distichus_contig101064.83.1|Name=mRNA_F-distichus_contig101064.83.1|organism=Fucus distichus monoicous|type=mRNA|length=790bp|location=Sequence derived from alignment at F-distichus_contig101064:151..940+ (Fucus distichus monoicous)
CGAAACGCCTTCTGCGCCGTAAGACCCCCAGGCCATCATGCGGGGCCCCG CGGGTTGGTGACGTGCGGGAACGACATGCACGGGTCGCATGGGTTTTGCC TTCTCAACAACGTGGTGAGTCAAACGTTTTATCAATAGTATTAGTATTAA TAGTATCGTTGTACTCCCTTTTCGGATCAAAAGCTGAACGGGGTGACACT CGGGAGAGACTGCCCTAGTGCATTTGTTGGAGGGGGGGGGTAGGCTAGGG TAGGGGTGCAGCGCCCCTCCCCCCTCGTGGGCGTGACCTCAAAGCTTCGT GTTTGACACTGTAATAAGGTTTCACTTTAGTAGTTTATAATTCTAGTATA AATGGCTTAGTGCAGTTGGAACGAAATGATATGATTGAACGTTATTAATA ATAGTGTGGTGGAAAAAAACAAACAAACTATTTTTTTGTGAAAAGGGAAA CAAAGGGAAACATCACGGTTTTTGTTTTTTGTTAGTAAAAGTAAAAGACA TGACCATCTCCCTGCCACCCACTTCATCTTTGGATCACATAACGAAGCAT GTCGATGAGGCATGTCGATGAAGCCTGTCGATGAAGCATGTCGATGAAAC ATGTCGATGAAAGGCAAGGGGTCTATCGCCTGGTCAATGCTGAAACCCGC AGAACCGTCTTCCCCGTGGCCGTGTATTATTATACCATCTTCCTTCGACG CAGGCCGTCGGTGCGGCTTACGCGAGATGTGTTCACCGCCACGCAGGCGT CGACAAGGTGGCGATCATAGACTTCGACGTCCACCACGGT
back to top

Coding sequence (CDS) from alignment at F-distichus_contig101064:151..940+

>mRNA_F-distichus_contig101064.83.1 ID=mRNA_F-distichus_contig101064.83.1|Name=mRNA_F-distichus_contig101064.83.1|organism=Fucus distichus monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at F-distichus_contig101064:151..940+ (Fucus distichus monoicous)
CGAAACGCCTTCTGCGCCGTAAGACCCCCAGGCCATCATGCGGGGCCCCG
CGGGTTGGTGACGTGCGGGAACGACATGCACGGGTCGCATGGGTTTTGCC
TTCTCAACAACGTGCGAAACGCCTTCTGCGCCGTAAGACCCCCAGGCCAT
CATGCGGGGCCCCGCGGGTTGGTGACGTGCGGGAACGACATGCACGGGTC
GCATGGGTTTTGCCTTCTCAACAACGTGGCCGTCGGTGCGGCTTACGCGA
GATGTGTTCACCGCCACGCAGGCGTCGACAAGGTGGCGATCATAGACTTC
GACGTCCACCACGGTGCCGTCGGTGCGGCTTACGCGAGATGTGTTCACCG
CCACGCAGGCGTCGACAAGGTGGCGATCATAGACTTCGACGTCCACCACG
GT
back to top