mRNA_F-distichus_contig101064.83.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig101064.83.1 vs. uniprot
Match: A0A6H5KMF3_9PHAE (Hist_deacetyl domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMF3_9PHAE) HSP 1 Score: 132 bits (332), Expect = 2.290e-34 Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 1
Query: 1 RNAFCAVRPPGHHAGPRGLVTCGNDMHGSHGFCLLNNVAVGAAYARCVHRHAGVDKVAIIDFDVHHG 201
RNAFCAVRPPGHHAG RGLVTC ND GSHGFCLLNNVA+GAAYARCVHRH GV++VAI+DFDVHHG
Sbjct: 680 RNAFCAVRPPGHHAGTRGLVTCANDGTGSHGFCLLNNVAIGAAYARCVHRHTGVERVAIVDFDVHHG 746
BLAST of mRNA_F-distichus_contig101064.83.1 vs. uniprot
Match: A0A7S1GP53_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GP53_CYCTE) HSP 1 Score: 118 bits (296), Expect = 3.700e-33 Identity = 52/67 (77.61%), Postives = 60/67 (89.55%), Query Frame = 1
Query: 4 NAFCAVRPPGHHAGPRGLVTCGNDMHG-SHGFCLLNNVAVGAAYARCVHRHAGVDKVAIIDFDVHHG 201
NAFCAVRPPGHHAGPRG+V C ND G SHGFCLLNNVA+GAAYARC++R+ G+ K+AI+DFDVHHG
Sbjct: 1 NAFCAVRPPGHHAGPRGIVRCANDPDGGSHGFCLLNNVAIGAAYARCMYRNDGIRKIAIVDFDVHHG 67
BLAST of mRNA_F-distichus_contig101064.83.1 vs. uniprot
Match: A0A2J7ZSV2_9CHLO (tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZSV2_9CHLO) HSP 1 Score: 122 bits (305), Expect = 2.120e-32 Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = 1
Query: 1 RNAFCAVRPPGHHAGPRGLVTCGNDMHGSHGFCLLNNVAVGAAYARCVHRHAGVDKVAIIDFDVHHG 201
RNAFCAVRPPGHHAGP G+V ND HGSHGFCLL+NVA+GAAYA VHRHAG+ +VAI+DFDVHHG
Sbjct: 142 RNAFCAVRPPGHHAGPTGVVPAPNDPHGSHGFCLLSNVAIGAAYAMSVHRHAGISRVAIVDFDVHHG 208
BLAST of mRNA_F-distichus_contig101064.83.1 vs. uniprot
Match: A0A8J9SU04_PHATR (Hypothetical protein (Fragment) n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SU04_PHATR) HSP 1 Score: 119 bits (297), Expect = 2.350e-32 Identity = 53/68 (77.94%), Postives = 59/68 (86.76%), Query Frame = 1
Query: 1 RNAFCAVRPPGHHAGPRGLVTCGNDMHG-SHGFCLLNNVAVGAAYARCVHRHAGVDKVAIIDFDVHHG 201
RNAFCAVRPPGHHAGP G+V C ND G SHGFCLLNNVA+GAAYAR ++RH G+ KVAI+DFDVHHG
Sbjct: 35 RNAFCAVRPPGHHAGPTGIVKCANDPEGGSHGFCLLNNVAIGAAYARSMYRHEGIQKVAIVDFDVHHG 102
BLAST of mRNA_F-distichus_contig101064.83.1 vs. uniprot
Match: A0A7S0N8J5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0N8J5_9CHLO) HSP 1 Score: 116 bits (290), Expect = 3.220e-32 Identity = 52/67 (77.61%), Postives = 58/67 (86.57%), Query Frame = 1
Query: 1 RNAFCAVRPPGHHAGPRGLVTCGNDMHGSHGFCLLNNVAVGAAYARCVHRHAGVDKVAIIDFDVHHG 201
R AFCAVRPPGHHAGP G+V ND HGSHGFCLL+N+A+GAAYA VHRHAGV +VAI+DFDVHHG
Sbjct: 38 RAAFCAVRPPGHHAGPGGVVPNDNDPHGSHGFCLLSNIAIGAAYAMHVHRHAGVKRVAILDFDVHHG 104
BLAST of mRNA_F-distichus_contig101064.83.1 vs. uniprot
Match: A0A7S3Q0M5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q0M5_9STRA) HSP 1 Score: 125 bits (315), Expect = 4.520e-32 Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 1
Query: 1 RNAFCAVRPPGHHAGPRGLVTCGNDMHGSHGFCLLNNVAVGAAYARCVHRHAGVDKVAIIDFDVHHG 201
RNAFCAVRPPGHHAGPRG+V C ND GSHGFCLLNNVA+GAAYARC++R+ G+ KVAIIDFDVHHG
Sbjct: 685 RNAFCAVRPPGHHAGPRGIVKCENDPEGSHGFCLLNNVAIGAAYARCMYRNDGIKKVAIIDFDVHHG 751
BLAST of mRNA_F-distichus_contig101064.83.1 vs. uniprot
Match: B8C1J3_THAPS (Histone deacetylase 1 HDAC Hda1p n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1J3_THAPS) HSP 1 Score: 124 bits (310), Expect = 1.710e-31 Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 1
Query: 1 RNAFCAVRPPGHHAGPRGLVTCGNDMHGSHGFCLLNNVAVGAAYARCVHRHAGVDKVAIIDFDVHHG 201
RNAFCAVRPPGHHAGPRG+VTC ND GSHGFCLLNNVA+GAAYAR ++R+ G+ KVAIIDFDVHHG
Sbjct: 351 RNAFCAVRPPGHHAGPRGIVTCPNDPDGSHGFCLLNNVAIGAAYARSMYRNDGIKKVAIIDFDVHHG 417
BLAST of mRNA_F-distichus_contig101064.83.1 vs. uniprot
Match: A0A7S2LK53_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LK53_9STRA) HSP 1 Score: 123 bits (308), Expect = 3.980e-31 Identity = 53/67 (79.10%), Postives = 61/67 (91.04%), Query Frame = 1
Query: 1 RNAFCAVRPPGHHAGPRGLVTCGNDMHGSHGFCLLNNVAVGAAYARCVHRHAGVDKVAIIDFDVHHG 201
RNAFCA+RPPGHHAGPRG+VTC ND GSHGFCLLNN+A+GAAYAR ++R+ G+ KVAIIDFDVHHG
Sbjct: 570 RNAFCAIRPPGHHAGPRGIVTCPNDPDGSHGFCLLNNIAIGAAYARSMYRNDGIKKVAIIDFDVHHG 636
BLAST of mRNA_F-distichus_contig101064.83.1 vs. uniprot
Match: A0A7S2QZ77_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2QZ77_9STRA) HSP 1 Score: 122 bits (307), Expect = 5.330e-31 Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 1
Query: 1 RNAFCAVRPPGHHAGPRGLVTCGNDMHGSHGFCLLNNVAVGAAYARCVHRHAGVDKVAIIDFDVHHG 201
RNAFCAVRPPGHHAGPRG+V C ND GSHGFCLLNNVA+GAAYAR ++R+ G+ KVAIIDFDVHHG
Sbjct: 334 RNAFCAVRPPGHHAGPRGIVKCANDPEGSHGFCLLNNVAIGAAYARSMYRNDGIKKVAIIDFDVHHG 400
BLAST of mRNA_F-distichus_contig101064.83.1 vs. uniprot
Match: A0A8J4CEM7_9CHLO (Hist_deacetyl domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CEM7_9CHLO) HSP 1 Score: 122 bits (307), Expect = 5.440e-31 Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 1
Query: 1 RNAFCAVRPPGHHAGPRGLVTCGNDMHGSHGFCLLNNVAVGAAYARCVHRHAGVDKVAIIDFDVHHG 201
RNAFCAVRPPGHHAGP G+VT ND HGSHGFC+L+NVA+GAAYA VHRHAG+ +VAI+DFDVHHG
Sbjct: 528 RNAFCAVRPPGHHAGPCGIVTNPNDSHGSHGFCILSNVAIGAAYAMAVHRHAGIQRVAIVDFDVHHG 594 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101064.83.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig101064.83.1 >prot_F-distichus_contig101064.83.1 ID=prot_F-distichus_contig101064.83.1|Name=mRNA_F-distichus_contig101064.83.1|organism=Fucus distichus monoicous|type=polypeptide|length=67bp RNAFCAVRPPGHHAGPRGLVTCGNDMHGSHGFCLLNNVAVGAAYARCVHRback to top mRNA from alignment at F-distichus_contig101064:151..940+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig101064.83.1 ID=mRNA_F-distichus_contig101064.83.1|Name=mRNA_F-distichus_contig101064.83.1|organism=Fucus distichus monoicous|type=mRNA|length=790bp|location=Sequence derived from alignment at F-distichus_contig101064:151..940+ (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig101064:151..940+ >mRNA_F-distichus_contig101064.83.1 ID=mRNA_F-distichus_contig101064.83.1|Name=mRNA_F-distichus_contig101064.83.1|organism=Fucus distichus monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at F-distichus_contig101064:151..940+ (Fucus distichus monoicous)back to top |