mRNA_F-distichus_contig100838.67.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig100838.67.1
Unique NamemRNA_F-distichus_contig100838.67.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig100838.67.1 vs. uniprot
Match: D7FR15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR15_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 5.080e-38
Identity = 70/111 (63.06%), Postives = 88/111 (79.28%), Query Frame = 1 
Query:    1 DLAVNSNIGSAGESIQSVNQEIRRTSGMRRGVVYSAGGFVLVLSLLYVLVGFYALRKDDGNGKAGGARMRGPIMMGCLFLPLTLIVILLCWFLFGLSTSLALLTADFCVSP 333
            +L  +  +GS   +I  + +E   T   RRGVVY+AG  VLV+S++YV VG+YAL KDDG GKAGGARMRGP+++GCL LPLTL+VILLCWFLFG+STS+ALLT+DFCV P
Sbjct:  265 ELIEDDQLGSVSTNILELEEEFSNTQTTRRGVVYAAGALVLVMSVVYVSVGYYALGKDDGRGKAGGARMRGPVLIGCLILPLTLLVILLCWFLFGVSTSVALLTSDFCVDP 375
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BLAST of mRNA_F-distichus_contig100838.67.1 vs. uniprot
Match: A0A6H5JJC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJC9_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 1.320e-37
Identity = 70/111 (63.06%), Postives = 87/111 (78.38%), Query Frame = 1 
Query:    1 DLAVNSNIGSAGESIQSVNQEIRRTSGMRRGVVYSAGGFVLVLSLLYVLVGFYALRKDDGNGKAGGARMRGPIMMGCLFLPLTLIVILLCWFLFGLSTSLALLTADFCVSP 333
            +L  +  +GS   +I  + +E   T   RRGVVY+AG  VLV+S++YV VGFYAL KDDG GK GGARMRGP+++GCL LPLTL+VILLCWFLFG+STS+ALLT+DFCV P
Sbjct:  766 ELIEDDQLGSVSTNILELEEEFSNTQTTRRGVVYAAGALVLVMSVVYVSVGFYALGKDDGRGKDGGARMRGPVLIGCLILPLTLLVILLCWFLFGVSTSVALLTSDFCVDP 876
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100838.67.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FR15_ECTSI5.080e-3863.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJC9_9PHAE1.320e-3763.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig100838contigF-distichus_contig100838:386..1666 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size357
Cds size357
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928926.1297526-CDS-F-distichus_contig100838:385..5301622928926.1297526-CDS-F-distichus_contig100838:385..530Fucus distichus monoicousCDSF-distichus_contig100838 386..530 -
1690885067.3185625-CDS-F-distichus_contig100838:385..5301690885067.3185625-CDS-F-distichus_contig100838:385..530Fucus distichus monoicousCDSF-distichus_contig100838 386..530 -
1622928926.149285-CDS-F-distichus_contig100838:1454..16661622928926.149285-CDS-F-distichus_contig100838:1454..1666Fucus distichus monoicousCDSF-distichus_contig100838 1455..1666 -
1690885067.3403254-CDS-F-distichus_contig100838:1454..16661690885067.3403254-CDS-F-distichus_contig100838:1454..1666Fucus distichus monoicousCDSF-distichus_contig100838 1455..1666 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig100838.67.1prot_F-distichus_contig100838.67.1Fucus distichus monoicouspolypeptideF-distichus_contig100838 386..1666 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig100838.67.1

>prot_F-distichus_contig100838.67.1 ID=prot_F-distichus_contig100838.67.1|Name=mRNA_F-distichus_contig100838.67.1|organism=Fucus distichus monoicous|type=polypeptide|length=119bp
DLAVNSNIGSAGESIQSVNQEIRRTSGMRRGVVYSAGGFVLVLSLLYVLV
GFYALRKDDGNGKAGGARMRGPIMMGCLFLPLTLIVILLCWFLFGLSTSL
ALLTADFCVSPVENTVVR*
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mRNA from alignment at F-distichus_contig100838:386..1666-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig100838.67.1 ID=mRNA_F-distichus_contig100838.67.1|Name=mRNA_F-distichus_contig100838.67.1|organism=Fucus distichus monoicous|type=mRNA|length=1281bp|location=Sequence derived from alignment at F-distichus_contig100838:386..1666- (Fucus distichus monoicous)
GATTTGGCGGTGAACAGCAACATCGGCAGCGCGGGCGAGAGCATCCAGAG
CGTGAACCAAGAGATTCGCCGGACCTCGGGAATGCGACGCGGGGTTGTTT
ACTCCGCCGGCGGCTTTGTCCTGGTGCTGTCGTTGCTGTACGTCCTGGTG
GGTTTCTATGCCTTGCGGAAGGATGATGGGAACGGAAAGGCGGGAGGCGC
TCGGATGCGAGGGTGAGAGATCAAAACAAAACCCCCTCAAAACTATCAAA
ACCGCTTACTTGTACTATCAAAACTTTTTTTCGGGTTGCTTTATGACGAG
TGACAGTCGTCATCTCACCGTTGTTTTTCAATTGTGCGAGGATGATGTTA
CGCTAAAAGTGTAAGCCAATTACCCAAGACAAGGCTGCGAGCTACGTGCT
CTTCGAATCAGTGTACAACATATCCAATGCAACAGGGCTGCGGTTTCTTT
CACAGCCTCCCGCGTACTCGAAAGACCCGTGAAAATCTTGCTACGATACT
CTTACCTCTTACATAAATCATGGAACAGATTGCAAGCAAGCACGATCAGT
GTGTCCGTTCCTGATGTGGTGTTCCTACTATGGCTTTGGCGGTCATAGTC
GGATAAAAACAAGAGAGAACAATATAAATGCTAACGAGGTTAGGATAATG
TCAGCTGATCGCTTGATAAGTGAAGAAAAGGAGTGGTTTCCGTGTGCAAA
TATGTCCAGGTGTAGTACAGTACGCCTTTTGTTGTCAAACTGCACATAAC
CGCGCGAGTTGGTTCCGTCGTGTTTACCAAAAGGCTTCTCGTGTTATGGG
TGCTACGAATGGGGCCATCAATTACAGTTGTTACGGAAACCTCTGACAAG
ACGCGACAAAGGGGACGCAGATTGTGTAGCCCACAGCCAAGCCTCATCCC
TTGTCATTACTTCCAACACTCTACCCCGCCCTCCCCGCTCCGCCCCCGAA
ACCATGCTATAAACCTCAAAACGCTTGTTTCGTTCAATCCAGTTCAAATT
TTGCTGACTAATTATCCCCACAGCTCATTCCATTAAATAATTTCTCTCTC
ATTTTCCTTCGAAATCTTGATCCCCTCTCACAACCTAACCTCGTGAAAAA
AACTGTCCCCCCGCCCCCCAATTTCCGGCGAGGAAGGCCTATCATGATGG
GGTGCTTGTTCCTGCCCCTGACGCTAATTGTGATCCTTCTGTGCTGGTTT
CTGTTCGGATTATCGACTTCTTTGGCCCTCCTCACCGCGGACTTCTGCGT
TTCTCCTGTCGAAAACACCGTGGTACGTTAA
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Coding sequence (CDS) from alignment at F-distichus_contig100838:386..1666-

>mRNA_F-distichus_contig100838.67.1 ID=mRNA_F-distichus_contig100838.67.1|Name=mRNA_F-distichus_contig100838.67.1|organism=Fucus distichus monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at F-distichus_contig100838:386..1666- (Fucus distichus monoicous)
GATTTGGCGGTGAACAGCAACATCGGCAGCGCGGGCGAGAGCATCCAGAG
CGTGAACCAAGAGATTCGCCGGACCTCGGGAATGCGACGCGGGGTTGTTT
ACTCCGCCGGCGGCTTTGTCCTGGTGCTGTCGTTGCTGTACGTCCTGGTG
GGTTTCTATGCCTTGCGGAAGGATGATGGGAACGGAAAGGCGGGAGGCGC
TCGGATGCGAGGGATTTGGCGGTGAACAGCAACATCGGCAGCGCGGGCGA
GAGCATCCAGAGCGTGAACCAAGAGATTCGCCGGACCTCGGGAATGCGAC
GCGGGGTTGTTTACTCCGCCGGCGGCTTTGTCCTGGTGCTGTCGTTGCTG
TACGTCCTGGTGGGTTTCTATGCCTTGCGGAAGGATGATGGGAACGGAAA
GGCGGGAGGCGCTCGGATGCGAGGGCCTATCATGATGGGGTGCTTGTTCC
TGCCCCTGACGCTAATTGTGATCCTTCTGTGCTGGTTTCTGTTCGGATTA
TCGACTTCTTTGGCCCTCCTCACCGCGGACTTCTGCGTTTCTCCTGTCGA
AAACACCGTGGTACGTTAAGCCTATCATGATGGGGTGCTTGTTCCTGCCC
CTGACGCTAATTGTGATCCTTCTGTGCTGGTTTCTGTTCGGATTATCGAC
TTCTTTGGCCCTCCTCACCGCGGACTTCTGCGTTTCTCCTGTCGAAAACA
CCGTGGTACGTTAA
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