mRNA_F-distichus_contig10081.65.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10081.65.1
Unique NamemRNA_F-distichus_contig10081.65.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig10081.65.1 vs. uniprot
Match: A0A6H5KXF7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXF7_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 8.180e-21
Identity = 57/157 (36.31%), Postives = 85/157 (54.14%), Query Frame = 1 
Query:   13 AWPALQSKYQNNSRQRRRALLRRPDNSVMEPETDPDVFLPEINQIRDELGVLDETVSTERLTTIVFDALPDEMYSTVKLQAIRDPDLSLEQIQRMMRTTYINHSERVSVTKKNQESNRYQGSNRKSRETGGRESAM-STALITCQYCKKPGHKVRDC 480
            AW AL  KY+N SRQR++ L ++  N  M+ + DPD F+ ++ ++RDEL +L   +  ++   I+ D LP+E+YS +K +A    DL+LEQ    MR  YIN  E                ++  SR   GR SAM ++   TC +C K GH  + C
Sbjct:  232 AWKALVKKYRNPSRQRQKILFKKLYNMTMDVDMDPDAFMHDMTELRDELQLLGSPIPDDQFMNIILDCLPEELYSGIKYEAETKDDLTLEQALYTMRNLYINRKE----------------ASGSSRAAKGRSSAMVASTTKTCSFCHKKGHLTQHC 372
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10081.65.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXF7_9PHAE8.180e-2136.31Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10081contigF-distichus_contig10081:3177..3656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size480
Cds size480
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928926.019726-CDS-F-distichus_contig10081:3176..36561622928926.019726-CDS-F-distichus_contig10081:3176..3656Fucus distichus monoicousCDSF-distichus_contig10081 3177..3656 -
1690885067.0769374-CDS-F-distichus_contig10081:3176..36561690885067.0769374-CDS-F-distichus_contig10081:3176..3656Fucus distichus monoicousCDSF-distichus_contig10081 3177..3656 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10081.65.1prot_F-distichus_contig10081.65.1Fucus distichus monoicouspolypeptideF-distichus_contig10081 3177..3656 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10081.65.1

>prot_F-distichus_contig10081.65.1 ID=prot_F-distichus_contig10081.65.1|Name=mRNA_F-distichus_contig10081.65.1|organism=Fucus distichus monoicous|type=polypeptide|length=160bp
DGRQAWPALQSKYQNNSRQRRRALLRRPDNSVMEPETDPDVFLPEINQIR
DELGVLDETVSTERLTTIVFDALPDEMYSTVKLQAIRDPDLSLEQIQRMM
RTTYINHSERVSVTKKNQESNRYQGSNRKSRETGGRESAMSTALITCQYC
KKPGHKVRDC
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mRNA from alignment at F-distichus_contig10081:3177..3656-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10081.65.1 ID=mRNA_F-distichus_contig10081.65.1|Name=mRNA_F-distichus_contig10081.65.1|organism=Fucus distichus monoicous|type=mRNA|length=480bp|location=Sequence derived from alignment at F-distichus_contig10081:3177..3656- (Fucus distichus monoicous)
GATGGTAGACAAGCTTGGCCAGCTTTACAGAGCAAGTATCAAAACAATTC
TCGGCAGCGTAGACGAGCCCTGTTGCGTCGCCCAGATAATAGTGTGATGG
AGCCTGAAACTGATCCTGATGTCTTTCTTCCAGAAATAAATCAAATTCGC
GATGAACTTGGGGTTTTGGACGAAACAGTATCAACGGAGCGCTTGACTAC
AATAGTATTCGATGCATTGCCCGACGAAATGTACTCGACAGTAAAACTTC
AAGCGATACGAGACCCCGATTTGAGTTTAGAACAGATTCAACGGATGATG
AGAACGACCTATATCAATCATTCGGAAAGGGTGTCAGTGACGAAAAAGAA
TCAAGAGTCCAATAGGTATCAAGGATCGAATCGTAAGAGTCGGGAAACTG
GTGGTCGTGAGTCAGCGATGTCGACTGCTCTCATCACCTGTCAATACTGC
AAGAAGCCAGGTCACAAAGTAAGGGATTGC
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Coding sequence (CDS) from alignment at F-distichus_contig10081:3177..3656-

>mRNA_F-distichus_contig10081.65.1 ID=mRNA_F-distichus_contig10081.65.1|Name=mRNA_F-distichus_contig10081.65.1|organism=Fucus distichus monoicous|type=CDS|length=960bp|location=Sequence derived from alignment at F-distichus_contig10081:3177..3656- (Fucus distichus monoicous)
GATGGTAGACAAGCTTGGCCAGCTTTACAGAGCAAGTATCAAAACAATTC
TCGGCAGCGTAGACGAGCCCTGTTGCGTCGCCCAGATAATAGTGTGATGG
AGCCTGAAACTGATCCTGATGTCTTTCTTCCAGAAATAAATCAAATTCGC
GATGAACTTGGGGTTTTGGACGAAACAGTATCAACGGAGCGCTTGACTAC
AATAGTATTCGATGCATTGCCCGACGAAATGTACTCGACAGTAAAACTTC
AAGCGATACGAGACCCCGATTTGAGTTTAGAACAGATTCAACGGATGATG
AGAACGACCTATATCAATCATTCGGAAAGGGTGTCAGTGACGAAAAAGAA
TCAAGAGTCCAATAGGTATCAAGGATCGAATCGTAAGAGTCGGGAAACTG
GTGGTCGTGAGTCAGCGATGTCGACTGCTCTCATCACCTGTCAATACTGC
AAGAAGCCAGGTCACAAAGTAAGGGATTGCGATGGTAGACAAGCTTGGCC
AGCTTTACAGAGCAAGTATCAAAACAATTCTCGGCAGCGTAGACGAGCCC
TGTTGCGTCGCCCAGATAATAGTGTGATGGAGCCTGAAACTGATCCTGAT
GTCTTTCTTCCAGAAATAAATCAAATTCGCGATGAACTTGGGGTTTTGGA
CGAAACAGTATCAACGGAGCGCTTGACTACAATAGTATTCGATGCATTGC
CCGACGAAATGTACTCGACAGTAAAACTTCAAGCGATACGAGACCCCGAT
TTGAGTTTAGAACAGATTCAACGGATGATGAGAACGACCTATATCAATCA
TTCGGAAAGGGTGTCAGTGACGAAAAAGAATCAAGAGTCCAATAGGTATC
AAGGATCGAATCGTAAGAGTCGGGAAACTGGTGGTCGTGAGTCAGCGATG
TCGACTGCTCTCATCACCTGTCAATACTGCAAGAAGCCAGGTCACAAAGT
AAGGGATTGC
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