mRNA_F-distichus_contig100698.59.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig100698.59.1
Unique NamemRNA_F-distichus_contig100698.59.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig100698.59.1 vs. uniprot
Match: D8LHI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHI4_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 1.300e-20
Identity = 43/68 (63.24%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:   85 SVMSSLAFKGEDWSCMMQTFFNNISILLGILSVLFNMTHFGVPINVINEVVYQRIVPGMGITLFLGNT 288
            S+MS L+F G +W CM Q FF+N S LLG+L  +FNMT FGVPI +INEVVYQ+I+PG+G+TL  GNT
Sbjct:    3 SMMSYLSFGGVEWGCMSQLFFDNTSTLLGVLGAIFNMTFFGVPIEIINEVVYQKILPGLGVTLVFGNT 70
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BLAST of mRNA_F-distichus_contig100698.59.1 vs. uniprot
Match: A0A8J9SX93_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SX93_PHATR)

HSP 1 Score: 57.0 bits (136), Expect = 9.980e-9
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:  112 GEDWSCMMQTFFNNISILLGILSVLFNMTHFGVPINVINEVVYQRIVPGMGITLFLGN 285
            G D     Q FF+N+  LLG+L  + +M +FGV   VINE V+ +IVPG+GI+L +GN
Sbjct:    3 GADMGAWCQLFFDNLGTLLGVLIAVQDMENFGVSRGVINETVFGKIVPGVGISLLVGN 60
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BLAST of mRNA_F-distichus_contig100698.59.1 vs. uniprot
Match: A0A448ZC90_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZC90_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 7.410e-6
Identity = 32/93 (34.41%), Postives = 50/93 (53.76%), Query Frame = 1 
Query:   25 QGARKAVRVLFAMPKVIVKGSVMS---SLAFKGEDWSCMMQTFFNNISILLGILSVLFNMTHFG---VPINVINEVVYQRIVPGMGITLFLGN 285
            Q AR+  R        IV+  V+S        G DW    Q FF+N+  LLG L  +  +++ G   V  +V+N++V+ +I PG+G+TL +GN
Sbjct:   13 QEARERRRSSIGSALSIVQDEVVSLKDGFTMSGGDWGSFTQLFFDNLGTLLGALYAIQGLSYMGDISVSEDVMNDIVWGKIAPGVGLTLVIGN 105
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BLAST of mRNA_F-distichus_contig100698.59.1 vs. uniprot
Match: A0A7S4EKF1_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EKF1_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 4.800e-5
Identity = 26/73 (35.62%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:   85 SVMSSLAFKGEDWSCMMQTFFNNISILLGILSVLFNMTH---FG---VPINVINEVVYQRIVPGMGITLFLGN 285
            S+   +   G DW    Q FF+N+S LLG L  +  ++    FG   V  +V+N++++ +I PG+G+TL +GN
Sbjct:   36 SLKDGMTMSGGDWGSFTQLFFDNLSTLLGALYAIQGLSSKVAFGDIAVSEDVMNDIIWAKIAPGVGVTLIIGN 108
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100698.59.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LHI4_ECTSI1.300e-2063.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8J9SX93_PHATR9.980e-948.28Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A448ZC90_9STRA7.410e-634.41Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S4EKF1_9STRA4.800e-535.62Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig100698contigF-distichus_contig100698:1184..2053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue9.3e-17
Seed eggNOG ortholog2880.D8LHI4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.purine nucleobase transmembrane transporter activity
EggNOG OGs2QRYA@2759,COG2252@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size292
Cds size291
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig100698.59.1prot_F-distichus_contig100698.59.1Fucus distichus monoicouspolypeptideF-distichus_contig100698 1184..2053 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928925.4809997-CDS-F-distichus_contig100698:1183..12641622928925.4809997-CDS-F-distichus_contig100698:1183..1264Fucus distichus monoicousCDSF-distichus_contig100698 1184..1264 +
1690885066.431277-CDS-F-distichus_contig100698:1183..12641690885066.431277-CDS-F-distichus_contig100698:1183..1264Fucus distichus monoicousCDSF-distichus_contig100698 1184..1264 +
1622928925.4949903-CDS-F-distichus_contig100698:1588..17381622928925.4949903-CDS-F-distichus_contig100698:1588..1738Fucus distichus monoicousCDSF-distichus_contig100698 1589..1738 +
1690885066.4434898-CDS-F-distichus_contig100698:1588..17381690885066.4434898-CDS-F-distichus_contig100698:1588..1738Fucus distichus monoicousCDSF-distichus_contig100698 1589..1738 +
1622928925.5103025-CDS-F-distichus_contig100698:1993..20531622928925.5103025-CDS-F-distichus_contig100698:1993..2053Fucus distichus monoicousCDSF-distichus_contig100698 1994..2053 +
1690885066.4534988-CDS-F-distichus_contig100698:1993..20531690885066.4534988-CDS-F-distichus_contig100698:1993..2053Fucus distichus monoicousCDSF-distichus_contig100698 1994..2053 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig100698.59.1

>prot_F-distichus_contig100698.59.1 ID=prot_F-distichus_contig100698.59.1|Name=mRNA_F-distichus_contig100698.59.1|organism=Fucus distichus monoicous|type=polypeptide|length=97bp
GSERNLLQQGARKAVRVLFAMPKVIVKGSVMSSLAFKGEDWSCMMQTFFN
NISILLGILSVLFNMTHFGVPINVINEVVYQRIVPGMGITLFLGNT*
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mRNA from alignment at F-distichus_contig100698:1184..2053+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig100698.59.1 ID=mRNA_F-distichus_contig100698.59.1|Name=mRNA_F-distichus_contig100698.59.1|organism=Fucus distichus monoicous|type=mRNA|length=870bp|location=Sequence derived from alignment at F-distichus_contig100698:1184..2053+ (Fucus distichus monoicous)
GGGTCCGAGCGCAATTTGTTACAACAAGGGGCGCGTAAGGCAGTCAGAGT
CCTGTTCGCGATGCCGAAGGTGATCGTGAAGGTGGGGACCGCAACTCAAG
ACTATCTAAAACAGCCTTGATACTTCGTAGTAAGCCAACTTTATGTGGGA
ATACTCGTACTACGAAGCTATTTTTAGAGCAGTTAATCTTACTGCAAATC
ACATGGATGGATAGAAGATGATTCAGTCGGGAATTCGAGCTTTAGGTACA
GATCTGTAGCCTTATAATAGTATTTAGTAGTACTTGAGAGATTGCCATCG
ACCACTGTGCGGATGACTGCCGGCATAGTAAAAAGAAAGCGCCCCGCTGC
AACCAATAAAAACTATATTATTTCAATGCTTTTTATGACCACCAATCGAG
CGCAGGGCAGCGTGATGAGCTCCCTGGCCTTCAAGGGGGAGGACTGGAGC
TGCATGATGCAGACCTTCTTCAACAATATATCCATACTGCTGGGTATCCT
GTCCGTCCTCTTCAATATGACCCACTTCGGCGTCCCCATCAACGTCATCA
ACGAGGTACGTAGTATGTATTCAATAGAACGCTCCAAATGCCGTCTCGCG
ACACGGCCCGGTTACCACCAGCTGGGCTGTCGAGACAGAGTCAGTCAGCG
TTGCCTACACCAGGATGTTGCGATATATAGTCCTTTACTCTATGATGATG
CTCTATGATAGTCTTATTTTGGTGAAAATGCAAACTGGCACCAGTTGCTG
ATTCTGCTGCTTTCAATCATTCTATGTACTAAGTATTCGTTTACCGTTGT
GCGGTTGCAGGTCGTTTACCAGAGAATCGTGCCTGGTATGGGTATCACCC
TCTTCCTTGGCAACACGTGA
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Coding sequence (CDS) from alignment at F-distichus_contig100698:1184..2053+

>mRNA_F-distichus_contig100698.59.1 ID=mRNA_F-distichus_contig100698.59.1|Name=mRNA_F-distichus_contig100698.59.1|organism=Fucus distichus monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at F-distichus_contig100698:1184..2053+ (Fucus distichus monoicous)
GGGTCCGAGCGCAATTTGTTACAACAAGGGGCGCGTAAGGCAGTCAGAGT
CCTGTTCGCGATGCCGAAGGTGATCGTGAAGGGGTCCGAGCGCAATTTGT
TACAACAAGGGGCGCGTAAGGCAGTCAGAGTCCTGTTCGCGATGCCGAAG
GTGATCGTGAAGGGCAGCGTGATGAGCTCCCTGGCCTTCAAGGGGGAGGA
CTGGAGCTGCATGATGCAGACCTTCTTCAACAATATATCCATACTGCTGG
GTATCCTGTCCGTCCTCTTCAATATGACCCACTTCGGCGTCCCCATCAAC
GTCATCAACGAGGGCAGCGTGATGAGCTCCCTGGCCTTCAAGGGGGAGGA
CTGGAGCTGCATGATGCAGACCTTCTTCAACAATATATCCATACTGCTGG
GTATCCTGTCCGTCCTCTTCAATATGACCCACTTCGGCGTCCCCATCAAC
GTCATCAACGAGGTCGTTTACCAGAGAATCGTGCCTGGTATGGGTATCAC
CCTCTTCCTTGGCAACACGTGAGTCGTTTACCAGAGAATCGTGCCTGGTA
TGGGTATCACCCTCTTCCTTGGCAACACGTGA
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