mRNA_F-distichus_contig10025.29.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10025.29.1
Unique NamemRNA_F-distichus_contig10025.29.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig10025.29.1 vs. uniprot
Match: D7FI22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI22_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 1.060e-43
Identity = 108/250 (43.20%), Postives = 163/250 (65.20%), Query Frame = 1 
Query:    1 TALRARAMFSLPRHSPSRGRIAAARIDSIILALVADDSIDGSKGGSGNGSLK------GDRGGDKAPL-----LSSA----------DVRKVVAHMDTDQSGEVDAKELEMAISAAKQGKLKDAQLMHCMLKIDNELHLWHLRICDLFDRLDADGSGTLSYEELTKGLSMLCGHDRNEIIQRRQELRRRNEEKKAQEIERRACVMGFVSNMESLPEEIMQDREFFATDVTDNETFHELLKKISRKVNEEV 687
            TALR +A  S+PR + SRGR+A  RID+I+ AL +    + +    G GS++      GD  G  + L     LSS+          +V  V+ ++D DQSGEVDA++ + AISAAKQGK+ D  L   + +I++ L L +LRI D+F  +D+DGSG LS+ EL +GLS+L  HDR+++I+RRQ LRRR E++K++E  +RA V  F+++M SL EE +++REFFAT+VTD + F +++++IS +   E 
Sbjct:  129 TALREKAELSIPRSTISRGRVAKVRIDAILHALESGWWSEEA----GRGSMRIFRGSFGDCAGASSTLSASMTLSSSSSSLSSLTLEEVEAVIVYVDKDQSGEVDARDFQAAISAAKQGKIPDQGLAGSIRRINDMLRLHNLRIRDVFHVMDSDGSGKLSHRELAQGLSLLYEHDRDKVIERRQALRRRKEQQKSKEDGKRAKVAAFLTSMGSLQEESLREREFFATEVTDEDLFQDIVQRISNETGYET 374
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10025.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FI22_ECTSI1.060e-4343.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10025contigF-distichus_contig10025:8947..11139 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-10_003220.1
Exons5
Model size798
Cds size777
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10025.29.1prot_F-distichus_contig10025.29.1Fucus distichus monoicouspolypeptideF-distichus_contig10025 8947..11118 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928923.0363963-CDS-F-distichus_contig10025:8946..91471622928923.0363963-CDS-F-distichus_contig10025:8946..9147Fucus distichus monoicousCDSF-distichus_contig10025 8947..9147 -
1690885061.828878-CDS-F-distichus_contig10025:8946..91471690885061.828878-CDS-F-distichus_contig10025:8946..9147Fucus distichus monoicousCDSF-distichus_contig10025 8947..9147 -
1622928923.0556667-CDS-F-distichus_contig10025:9689..98221622928923.0556667-CDS-F-distichus_contig10025:9689..9822Fucus distichus monoicousCDSF-distichus_contig10025 9690..9822 -
1690885061.8402946-CDS-F-distichus_contig10025:9689..98221690885061.8402946-CDS-F-distichus_contig10025:9689..9822Fucus distichus monoicousCDSF-distichus_contig10025 9690..9822 -
1622928923.076846-CDS-F-distichus_contig10025:10073..101471622928923.076846-CDS-F-distichus_contig10025:10073..10147Fucus distichus monoicousCDSF-distichus_contig10025 10074..10147 -
1690885061.8569489-CDS-F-distichus_contig10025:10073..101471690885061.8569489-CDS-F-distichus_contig10025:10073..10147Fucus distichus monoicousCDSF-distichus_contig10025 10074..10147 -
1622928923.0928571-CDS-F-distichus_contig10025:10417..105491622928923.0928571-CDS-F-distichus_contig10025:10417..10549Fucus distichus monoicousCDSF-distichus_contig10025 10418..10549 -
1690885061.8806155-CDS-F-distichus_contig10025:10417..105491690885061.8806155-CDS-F-distichus_contig10025:10417..10549Fucus distichus monoicousCDSF-distichus_contig10025 10418..10549 -
1622928923.1079488-CDS-F-distichus_contig10025:10881..111181622928923.1079488-CDS-F-distichus_contig10025:10881..11118Fucus distichus monoicousCDSF-distichus_contig10025 10882..11118 -
1690885061.896338-CDS-F-distichus_contig10025:10881..111181690885061.896338-CDS-F-distichus_contig10025:10881..11118Fucus distichus monoicousCDSF-distichus_contig10025 10882..11118 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928923.122293-UTR-F-distichus_contig10025:11118..111391622928923.122293-UTR-F-distichus_contig10025:11118..11139Fucus distichus monoicousUTRF-distichus_contig10025 11119..11139 -
1690885061.9423966-UTR-F-distichus_contig10025:11118..111391690885061.9423966-UTR-F-distichus_contig10025:11118..11139Fucus distichus monoicousUTRF-distichus_contig10025 11119..11139 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10025.29.1

>prot_F-distichus_contig10025.29.1 ID=prot_F-distichus_contig10025.29.1|Name=mRNA_F-distichus_contig10025.29.1|organism=Fucus distichus monoicous|type=polypeptide|length=259bp
MFSLPRHSPSRGRIAAARIDSIILALVADDSIDGSKGGSGNGSLKGDRGG
DKAPLLSSADVRKVVAHMDTDQSGEVDAKELEMAISAAKQGKLKDAQLMH
CMLKIDNELHLWHLRICDLFDRLDADGSGTLSYEELTKGLSMLCGHDRNE
IIQRRQELRRRNEEKKAQEIERRACVMGFVSNMESLPEEIMQDREFFATD
VTDNETFHELLKKISRKVNEEVMYDDITCQMNDRSNDGDGQDDCGSLVEG
ADGNVVRRR
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mRNA from alignment at F-distichus_contig10025:8947..11139-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10025.29.1 ID=mRNA_F-distichus_contig10025.29.1|Name=mRNA_F-distichus_contig10025.29.1|organism=Fucus distichus monoicous|type=mRNA|length=2193bp|location=Sequence derived from alignment at F-distichus_contig10025:8947..11139- (Fucus distichus monoicous)
ACAGCCCTGCGCGCAAGAGCGATGTTTTCGCTTCCTCGACACAGCCCTTC
TCGTGGAAGAATCGCCGCGGCGCGTATCGACTCTATTATTCTGGCACTCG
TCGCGGACGACTCGATAGACGGGAGCAAGGGCGGGAGCGGGAATGGAAGC
TTGAAGGGGGACCGAGGCGGGGACAAAGCCCCCTTGCTGAGTTCTGCAGA
TGTTCGGAAGGTCGTCGCCCACATGGATACGGACCAGTCTGGCGAAGTCG
ACGCAAAGGTGTGGGAGGCTACATAACTTACAACCGATTATTGCAAAGAG
ATTATGTGTACTGTTTTCTACCTGGTACGCTAGCGCTATTTGTAGGATAA
TATATGTTTCGGGGCCGAAGCGTAGGATCTATAATCAATAATCGGGCGTT
GTGATAGCTGTGAAGCGGTGTGGGAGTACTTGTCTCGCGTGCGCGACGAC
TCGAAACGTACGAAGTGTACACGTTGTGTGATTTGAGACTAAGAAGTTGA
TTCTTGCATGCGCGTCGATACCCACTCGGCATTTGTTGAAGAATGTCAAA
ATGATGGTACGAAACCTCGGGGCGGCCGTCACCCTTTCAGGAGCTCGAGA
TGGCCATCAGCGCAGCCAAGCAGGGCAAGCTCAAGGACGCTCAGCTGATG
CACTGCATGCTGAAGATCGACAATGAGCTGCATCTCTGGCACCTGAGGAT
ATGCGACTTATTTGACAGGCTGGTGCGAGCAAGGCGTTAATTTGTTACGG
TGTAATCTTTATCGCTGAAGAGTATTAAGTGGAGAGCGTTTTCGATCTTC
TGGCCGTCATTCTGTGTGCGTTACAAAACGTTGAACCGTTTCCAGTAGAC
TGTGTCAGAGATGGGCGTTACTACTCCTGCTACAGAGAATTGAAGCGATA
AAACGCTCCTCCTCCAGAGTAGAGTGCACGCTGTACGCATCGCGAGCATC
GTGTAGACATTATCGAATGACTGGGAATTCACGCTTTTACAGGACGCTGA
CGGAAGTGGGACCCTTTCTTATGAAGAGCTAACCAAAGGCCTCAGCATGC
TCTGCGGGCATGACAGGTTTGACTATTTTTTGTCCCGCGACCACCGCAAT
GAACAGATTCCGCATTCTCGACGGTGGAATACGAGCGGGTACCAATGTGT
TGTAGCTTTTTGAAGCGAAAAATACAATACTTGCGTTGGACGTAAGGGCG
ATGTCGACTCTCAAATAGTAATGCAAAAACAGGTACTACATGTTTAGCAG
CTCAGAGTCCTCTTTTCCCGCCGCCCTCTTGTCGGGTGCGTCGCACGTAA
TGCTGTGCTGTGTACAGAAATGAGATCATCCAACGGCGTCAAGAGCTACG
CCGGCGAAACGAGGAGAAGAAGGCGCAGGAGATTGAGAGGAGAGCGTGCG
TAATGGGCTTCGTTTCCAACATGGAGAGCCTGCCCGAAGAGATCATGCAA
GTGTGTACTTGCGCGGCGGTCGACTCCAATTTTTTTATTTATTTTTTTAA
TCACACTTATAGACGATGGACCTCTAATTACCATCCTGCCTGTGGTCACA
AAGGATCTTTCCATCTCTCCCCGGTTCACGCCTTACAATTTTTATCGCGA
TGCAAGTTCAGCACTCTTACAACTCGTCAACCAATGGTTGAATTTTACTC
CAATACAACATAAAAATGCGATCAAGTGTCACCAGGCGTCTCGAAGTCGT
AATCGACGGGTATTGTGCGACTAGTGCGCGCTACGGTGGCCATCCGCGGA
TGCTCTCGAGTTAATTCGCATCGAGATCGAAATATATGAAACAAAACAAA
ACGAAACGGAAAAAGTGCAAAATTCACCCGCCTCATATGATCACGAAAGG
CAAGCCTGCCGCGCAAGTACACTACTGCACAGGCCAAATTTCGACAGCAC
CTCGTCGCGGAAGACTGACTCTGGGCCTCCCGCGCCTCCCTAACTTTTCA
AACACGCCCCTAAAAATCGATGCCCCCCAAAAAAACAAAAAGGACCGAGA
GTTCTTCGCCACCGACGTCACGGACAACGAGACCTTCCACGAGCTATTGA
AAAAAATCAGCAGAAAAGTCAACGAAGAAGTCATGTATGATGACATTACG
TGCCAGATGAACGACCGGTCAAACGACGGCGATGGCCAAGACGACTGCGG
TAGCCTCGTTGAGGGCGCTGACGGGAACGTGGTTCGCCGTCGT
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Coding sequence (CDS) from alignment at F-distichus_contig10025:8947..11139-

>mRNA_F-distichus_contig10025.29.1 ID=mRNA_F-distichus_contig10025.29.1|Name=mRNA_F-distichus_contig10025.29.1|organism=Fucus distichus monoicous|type=CDS|length=1554bp|location=Sequence derived from alignment at F-distichus_contig10025:8947..11139- (Fucus distichus monoicous)
ATGTTTTCGCTTCCTCGACACAGCCCTTCTCGTGGAAGAATCGCCGCGGC
GCGTATCGACTCTATTATTCTGGCACTCGTCGCGGACGACTCGATAGACG
GGAGCAAGGGCGGGAGCGGGAATGGAAGCTTGAAGGGGGACCGAGGCGGG
GACAAAGCCCCCTTGCTGAGTTCTGCAGATGTTCGGAAGGTCGTCGCCCA
CATGGATACGGACCAGTCTGGCGAAGTCGACGCAAAGATGTTTTCGCTTC
CTCGACACAGCCCTTCTCGTGGAAGAATCGCCGCGGCGCGTATCGACTCT
ATTATTCTGGCACTCGTCGCGGACGACTCGATAGACGGGAGCAAGGGCGG
GAGCGGGAATGGAAGCTTGAAGGGGGACCGAGGCGGGGACAAAGCCCCCT
TGCTGAGTTCTGCAGATGTTCGGAAGGTCGTCGCCCACATGGATACGGAC
CAGTCTGGCGAAGTCGACGCAAAGGAGCTCGAGATGGCCATCAGCGCAGC
CAAGCAGGGCAAGCTCAAGGACGCTCAGCTGATGCACTGCATGCTGAAGA
TCGACAATGAGCTGCATCTCTGGCACCTGAGGATATGCGACTTATTTGAC
AGGCTGGAGCTCGAGATGGCCATCAGCGCAGCCAAGCAGGGCAAGCTCAA
GGACGCTCAGCTGATGCACTGCATGCTGAAGATCGACAATGAGCTGCATC
TCTGGCACCTGAGGATATGCGACTTATTTGACAGGCTGGACGCTGACGGA
AGTGGGACCCTTTCTTATGAAGAGCTAACCAAAGGCCTCAGCATGCTCTG
CGGGCATGACAGGACGCTGACGGAAGTGGGACCCTTTCTTATGAAGAGCT
AACCAAAGGCCTCAGCATGCTCTGCGGGCATGACAGAAATGAGATCATCC
AACGGCGTCAAGAGCTACGCCGGCGAAACGAGGAGAAGAAGGCGCAGGAG
ATTGAGAGGAGAGCGTGCGTAATGGGCTTCGTTTCCAACATGGAGAGCCT
GCCCGAAGAGATCATGCAAAAATGAGATCATCCAACGGCGTCAAGAGCTA
CGCCGGCGAAACGAGGAGAAGAAGGCGCAGGAGATTGAGAGGAGAGCGTG
CGTAATGGGCTTCGTTTCCAACATGGAGAGCCTGCCCGAAGAGATCATGC
AAGACCGAGAGTTCTTCGCCACCGACGTCACGGACAACGAGACCTTCCAC
GAGCTATTGAAAAAAATCAGCAGAAAAGTCAACGAAGAAGTCATGTATGA
TGACATTACGTGCCAGATGAACGACCGGTCAAACGACGGCGATGGCCAAG
ACGACTGCGGTAGCCTCGTTGAGGGCGCTGACGGGAACGTGGTTCGCCGT
CGTGACCGAGAGTTCTTCGCCACCGACGTCACGGACAACGAGACCTTCCA
CGAGCTATTGAAAAAAATCAGCAGAAAAGTCAACGAAGAAGTCATGTATG
ATGACATTACGTGCCAGATGAACGACCGGTCAAACGACGGCGATGGCCAA
GACGACTGCGGTAGCCTCGTTGAGGGCGCTGACGGGAACGTGGTTCGCCG
TCGT
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