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Homology
BLAST of mRNA_F-distichus_contig10014.20.1 vs. uniprot
Match: D8LM76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM76_ECTSI) HSP 1 Score: 105 bits (261), Expect = 6.550e-24 Identity = 65/160 (40.62%), Postives = 91/160 (56.88%), Query Frame = 3
Query: 234 NSEAPVFYIKGLK--GGVGA------------------TRYQGDDAGEGRSQIVTQRSVPGMSETGEIRGMDGE---------DDTPMWDKVQQSLGLGKWSYIGLGLALFMITLNNFLGLGWLGRAINPDFE---LVDVESQRSQIQVMRLDDSSNLIS 617
+S+AP+ YIKGLK GGVG R G+ A R+ +R + G + E +GE + P+W+KVQ +LGLG WSY+GLGLA+F+I LNN LG+GW + INP++E +++V+ Q QIQ M LDD+SNL+S
Sbjct: 57 DSDAPILYIKGLKEGGGVGLWGSEDDXXXXXXXXXXXPARGGGNAAMMARALRNAEREIEGGGDYEEGVEEEGEGVGNQEAVVNQMPVWEKVQAALGLGVWSYVGLGLAVFIIVLNNVLGVGWATKIINPEYEPDSVLEVQQQGRQIQYMPLDDASNLLS 216
BLAST of mRNA_F-distichus_contig10014.20.1 vs. uniprot
Match: A0A6H5KPT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPT2_9PHAE) HSP 1 Score: 105 bits (262), Expect = 2.100e-23 Identity = 62/160 (38.75%), Postives = 91/160 (56.88%), Query Frame = 3
Query: 234 NSEAPVFYIKGLKGGVGATRYQGDD--------------AGEGRSQIVT------QRSVPG-------MSETGEIRGMD--GEDDTPMWDKVQQSLGLGKWSYIGLGLALFMITLNNFLGLGWLGRAINPDFE---LVDVESQRSQIQVMRLDDSSNLIS 617
+S+ P+ YIKGLK G G + +D G G + ++ +R + G + E GE+ G + P+W+KVQ +LGLG WSY+GLGLA+F+I LNN LG+GW + INP++E +++V+ Q QIQ M LDD+SNL+S
Sbjct: 128 DSDVPILYIKGLKEGGGVGLWGSEDDXXXXXXXXXXXXXRGGGNAAMMARALRNAEREIEGGGDYEEGVEEEGEVGGNQEAAVNQMPVWEKVQAALGLGVWSYVGLGLAVFIIVLNNVLGVGWATKIINPEYEPDSVLEVQQQGRQIQYMPLDDASNLLS 287
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-01_005800.1 |
| Exons | 2 |
| Model size | 767 |
| Cds size | 621 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622928920.953897-UTR-F-distichus_contig10014:3581..3701 | 1622928920.953897-UTR-F-distichus_contig10014:3581..3701 | Fucus distichus monoicous | UTR | F-distichus_contig10014 3582..3701 - |
| 1690885061.0414824-UTR-F-distichus_contig10014:3581..3701 | 1690885061.0414824-UTR-F-distichus_contig10014:3581..3701 | Fucus distichus monoicous | UTR | F-distichus_contig10014 3582..3701 - |
| 1622928920.9880342-UTR-F-distichus_contig10014:10035..10061 | 1622928920.9880342-UTR-F-distichus_contig10014:10035..10061 | Fucus distichus monoicous | UTR | F-distichus_contig10014 10036..10061 - |
| 1690885061.0782428-UTR-F-distichus_contig10014:10035..10061 | 1690885061.0782428-UTR-F-distichus_contig10014:10035..10061 | Fucus distichus monoicous | UTR | F-distichus_contig10014 10036..10061 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622928920.964885-CDS-F-distichus_contig10014:3701..4270 | 1622928920.964885-CDS-F-distichus_contig10014:3701..4270 | Fucus distichus monoicous | CDS | F-distichus_contig10014 3702..4270 - |
| 1690885061.0562494-CDS-F-distichus_contig10014:3701..4270 | 1690885061.0562494-CDS-F-distichus_contig10014:3701..4270 | Fucus distichus monoicous | CDS | F-distichus_contig10014 3702..4270 - |
| 1622928920.9757013-CDS-F-distichus_contig10014:9983..10035 | 1622928920.9757013-CDS-F-distichus_contig10014:9983..10035 | Fucus distichus monoicous | CDS | F-distichus_contig10014 9984..10035 - |
| 1690885061.0656583-CDS-F-distichus_contig10014:9983..10035 | 1690885061.0656583-CDS-F-distichus_contig10014:9983..10035 | Fucus distichus monoicous | CDS | F-distichus_contig10014 9984..10035 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig10014.20.1 >prot_F-distichus_contig10014.20.1 ID=prot_F-distichus_contig10014.20.1|Name=mRNA_F-distichus_contig10014.20.1|organism=Fucus distichus monoicous|type=polypeptide|length=207bp
MAILVLFSHESYGWLKPGSRQQHPLPPTKAFPRRVTRIAADSSNDGEGRD SGAAPGENPKQGQVPPMQNNSEAPVFYIKGLKGGVGATRYQGDDAGEGRS QIVTQRSVPGMSETGEIRGMDGEDDTPMWDKVQQSLGLGKWSYIGLGLAL FMITLNNFLGLGWLGRAINPDFELVDVESQRSQIQVMRLDDSSNLISPSS SSQAVK* back to topmRNA from alignment at F-distichus_contig10014:3582..10061- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-distichus_contig10014.20.1 ID=mRNA_F-distichus_contig10014.20.1|Name=mRNA_F-distichus_contig10014.20.1|organism=Fucus distichus monoicous|type=mRNA|length=6480bp|location=Sequence derived from alignment at F-distichus_contig10014:3582..10061- (Fucus distichus monoicous) TTCTGCACGCATATTGGTATATATTCATGGCAATCCTGGTATTGTTCTCC
CATGAATCCTACGGATGGCTAAAACCTGGTGAGAACTGCATTTCTGGAAC
GCAGCCCTAACGAAGAGCATTCAGGATCAGGGTTGTGGATAGCAAGGAGC
TAGTGGTGTTTTACTTTTACCAAACACTGCCAAGTATTCAATTCTCGACA
TGTGTGATCAACTTCATGTAACTTTGAAAGACTTGATTTTGATTCCTGAT
AAGGCGAGCCTGTATGGGCCGATGGTGACGGTGAAACATGAGTCCGTATT
TAAAGAAAAATCTGAATGCATCCAAACTCGCCCAGCATCGACACCATCTT
TGGGATGTATCTGTCATATGCTGACTGGCACTGGGAGATATCCTGCGGAG
GGAGCGGAGACGGTTCGTGATCATGACCACCCGGTCTTGCAGCCTGAAGC
CTATGGCACGAGCGTAGCACCGTAGGTCATAATAGTGCCGACATTGTATA
AGATAGTGGGCTTCAAAGGTAAATTCGGCAATCTCTGCTGCAGACACTTT
ATCTCTCCTCCGAGTATTATTTATAGAGAATATTGCACGTGGAATATTGG
AGAGATCTCCCTCCCTCCCCCCCCCCAAAAAAAGTATTTTGTACGACAGC
ATGTCAAGGTTTAAAAAAGAGGAATGGCCAAAATCAGGTATACCCGATGG
TGATGTGGCCATTATCGGGTACACTTCTAATTAAACGACCGAAACAGCCC
CAGGACGCCACCTTCTTGGCCAACGCCGGCCACTACCCGACCGTGGCCAC
ATTTCCACCGGGTGTGCCCGATTTTGGCTATTCAACTCGCGAAGGGTACC
CGATTCTCGCTCCCTACCCGATAATGGCCACAAACACACGGGCTCTTCGA
CCAACGGCCCACACACGCGCCAACCCAGGTTCATGTTCCCAACTATCGAC
ATGTTCTCAGCTATCGACGGCGACGACCTTCTTCCAGATTGACTCTCTCC
AAGGCTCACGCTTGCTTGTCTCTTTCCCTTTCTCTCTCTCTGTCTCACAC
ACACACACACACAACCAACCAAACAGAAGCCACACTCAACCACACTCAGC
ACAGCAGTTGTGACAGACCGACCATGAGCGACAGCACCACCAAACTCGCA
GAAAAGCAGTGTTACCCAGACACAAAGGCCTTGCGGACCGCCGTAGGCGA
GTTCTTCGCACACGACAGCCGCTCGTTCACCGCGAGCAAGAACAGTGGAG
GAAAGCAGAAGGCTTAGACTACTTGTGCTCAGGGAAGGAAGGAGGGAGGC
TGCGAGGCACTACCAGATTACCTCTACTACTCGTAATAGTATTAGTATAC
TGCTGCTGATTGCTTGTGGTGTGCTAGCTATTGATCGAGTCCTCGTGTTA
CATGTATGGTCACACATATAGCAAGAGTATGGATCAACCTGGTAAGGTTG
CCAATCCTGCTCGTGGTCAGCTGTACATGTAAAATGCTAAATGCTGACGT
ATCTCTTCTATCTCTCATGTCTTTTTGTCTAGGCTAATTATTGTCCGCTG
GTGTCAAAGAGTCAAGGTCAACAAACATGCATGTGCCATATCGGTGGCAT
CGTGTGGCAAAGGTAAATACAGGATAAAGAAAGACTCGTAAAGAAAGGGC
GTTTTAATCCTGTTGCTGCCGCTGTAGTAGACTAGAGCAGTATCTATTTA
GAGGAAAACAAAACTTGAGAATACATAGTGCCCCTGCCTTTTATTTAGAA
GATAATTATTACTCGATTATTAGCTTGCACATCAAGGATGTTCTGAAAAA
AAAAAACAAAAAAAAAACATCAAGGATGTTCTGGCCCTCTGGATTCTTGC
TGACACTACTAGCAGTAGTAAACTAATTCAATATTCCGGCCCAGACTCCC
TGGCAGACCCTTGCAAACAAGTAGGCATATTGAATGTACAGTATAGTATC
ATCGTTATCGGTTTCAAACAGAGACAAAAAAGTCCATACAAATTTCGGGA
TAAACTAACTATACCGACGGCGGAGTAATACTGTTAATAGTAACTCATGC
ATCATACGCAAGTGTGGAGATTTCGTGCCCATGAATAGATATTTTGTGAA
AAATTATGAATATTTCATGCCTCTTGTTCACATATATTCATATATAGTTG
AATAGTGTTTAAATTAGGAGCAGGAGGTCGTCAACCACAGAAAGAGTCAA
ACAAGATAAGAGAAGATGCCCGCCCCCCGAACGAACACGCGTTTGCGACT
CTTTCGCGAATGATGTTGTTTGTCCTCGTCGCTTACAGCATCGTTCCGGT
TTATGCCCCCTTATTTTTGTACTATTAATAACACAACGGTCACAGACAAG
AAAGCAAGAAAAAAACATCACTGAAAATAGAACAAGCCATTACGGTCATT
ACCGTCGTGAGAAAGATAACGGGATCACGTGCAAAACCCATTGTCATCTT
TGCAAGCACACCAAGCTTGCAAAGGAAAAGCGGTCGTCTTCTGTTGCTCA
TTCCCATTGGTGGTGCCTGTGGTGCGTAATGCGCTGTCACGCCAGGACGA
GGTGGTCGTTCCTCTGACTCCAACTCGGATAGTCTATACTGTATCAGCAG
CGATAAAAAAAGATTTGCAGGTATAAGGTATACTTTTGAGTCCAAACTAT
TCTTTTTTAACAAAAAAAGAGAGAGAATCAACAAAAAAGGAGGTCTAAGG
GGGTGAAAAAGGTAGCGAACGCTAAATGGTTACAAAATATAACAACGGTC
ACAAGCGGATAATGTGCAGAGTTTATGGTGCTGCTCTGATAACATAATTT
GACCAGAATCCACAAACTGTGAAGATCCACATATACGAGGTACCTGCTTT
GGCTATTCGTGTATGACATTTCGACATTTCCATGAAAGATGCTCAAAATG
CATCACCCTGGCAGAAAATGAATGTTTCCGTTCCGTTACCGACAGCAATT
ACAATTTTTATGGTGTGCCAGAGCATGCCGATAGAAGGCCGTCACCGTCG
GTAGCTGAGAACACGAACCTGGGATGGCGCGTGTGTGGGCTGTTGGTCGA
AGAGCCCGTGTGTATGTGGCCATTATCGGGTAGGGGGCATGATAATCGGG
TACCCTTCGCGAGTTGAATAGCCAAAATCGGGCACACCCGGTGAAAATGT
GGCCACGGTCGGGTAGTGGCCGGCGTTGGCCAATGAGGTGGCGTCCTGGG
GTTGTTTCGGTCGTTGAATTATGAGTGTACTCGATAATGGCCACATAACC
ATCGGGTATACCCGATTTTGGCCATTCCTCTTTTAAGAAATATGAACGCA
TCTACGTAAACCTTCTGGTCATCCACCCAGTGTGAAGCACTTCCAGCATA
GTATTGTAGTATTGTAGTATTGTATGGATCAGCCGGGTATGGTCGCCAAT
CGTGCTCGTGGTCAGCTGAACAGGGAAAAATATGTGTTTCCCTGTCTCCC
TTCGCGCCTGAAAACATGGTCTCGCGAGACACGTTCGGCCGTCCCGTCCC
GCGTCGTAGAGCTAGATTAAAACTCGTAAACGAGACTGGAGAACGGGGAA
AGATGGGAACGTCCTTGGTGATCTTGCCGGATGAAATTGTTTAAAGAAGA
GTCTAAACGCATCCAAACCTTCTGAGGATCCCTCAGACAGGGGGGGGGGG
GATGTTAAAGCGCTTGTGTGGGATCATGGCTGGAATTGCTGTATGTAGGT
GGAAGCAGTAACCTATATTAACATATTGATTACGCCCATTGATAGCAAGT
GGAATAAAAAGTCTCACATATACAAACGGGTAAGGTTGCCAATCTTGCTC
GTAGTCAGCTGAACAGGGAGAATGAATATTTCCCTGTCCCCGTTCGCGCC
TGAGAATTTGGTCTCGTCAGACAGGTTAGGTTGTCCCGTCCCTCGTCAGC
CTAGTCATCCCCACACCCAGGCTAAATCTGGTGCTTACTTACGGGATTGC
TCCCGATTTACGCGGTGGCGTCCATTTATCTATTTAAAACCGCCACACAT
CATCGGGTCAGTCCCGAGTTTATCGGGTCACGCAATTGCGTACCCGATGG
CGTTCACTGCCGAGAGTCTGCCGGCACAGGGCCAGTAAACCTCAAAGTAG
TTCCAAACGAGTGCTGCCTTGGCAGGTCAACCATGGACCAAATAATATGC
GCCTCTCTTTTCCACACCCACTATTGGTATGAAGTGGTTATAACATGTTG
AAAGTAACGGCAAAGGATATTTGTCAATTTGCATTTACTCTGTGTTGTGT
TTGATGTCAATTGGAAACCCCAAGTCATTCTCACGGGAACCCGACTCCCA
CCTCTCAAGTAAGTGCAGTTTTTGCTCAACACACGAATATAACTTACCTA
CGGTACCCACCCAAATGTTTGGACGTTGTTTCCCCGGACAGTGGATGCTC
AGATTTTTAGTTTGGGTACGGTCAGATTTTTCCATGAGTTGTCCGAACGA
CGTCGCGGTACCGTACGAGTATGTATGGTCATCACATATATGACATAGCG
TCATCACATATAGCAAGAGTAGGTTGCCAATCCTGCTCGTGGTCAGTTGA
ACAGGGAAAATAATATTTCCCTGTCCCCCGTTCGCGCCTGAGAGTTTGGT
CTCGCGAGATGAGTTCGACCGTCCCGTCCCGCGTCGGCCTGCTCGTTCTC
CACTCTCAGGCTGGAATCAAGGGATTCCTCCCGATTTCCGCGGCGGCGTC
CATTTATTTATACCGCCATACTACATCGGGTCAGTCCCGAGTTTATCGGG
TCACGCAGCCGAGAGTCCTCCGACACTGTGGCAGTAGTCCTCAAGGTAGT
TCCAGTAACGGGTGCTGTCTTTGCAGGTCACCATGAAGCAATTGGTGTGC
GCCTCCCTTTTCCCATACCCATTAATGGTACAAGTATCAAGTGGTTATAG
CATGTTGAAAGTATCGAAGGCTAGTATATACGGTACATAGTACTGTACAC
ATCCTGTCAACACCCATACTGTAGGAACACTTTTGCTTTACATATAGACT
AGAGCTACAGTATGAATATATGGTTTATTTTTTTAGTCATTACTTTCTGC
CACGTACAGTATCACGGAAAACAGTGGACACCAAACCCATTTACAGCCTA
CGTAGCGCAGTGCTGCCTTCTACGTATAGGGGATCGACTCATTTCCCCCC
CCGGTTCACGCCTGCAACTACACCTTTTTATCGCGATACAATTCAACAAC
TCCTACATACACTTGCTGAAAACTGTTGCTTCAACCGACTCACGTCCCTA
CGTTTTACGCTTCGATTTTACCCCGAAATCGTGTCGGAACTTCAACAACA
GAGTGTGCAAAGGCACCAGCGGCACCAGTTGAACCCCCGGGACGTTTGGC
GCGGTGATGTGCCCAGTGTGGTGGCATCAATTAAAAAAAAACTGCCAAAC
ACGCTTGTGGTCACCCTGACAGGGGAACACCAACTTTCCCTGTCCCCGTT
CGCGCCTGAAAATTTGATCTCGCGAGAGAGTTTCGGCTACTACCCCGTCC
CGCGTCAGTCTCCGCATCCAGGCTGAAAATTCGGTGCCCGCTTACGGGCT
CCTCTTCTCCCTCCAGCTTTCCACAGTGGTGGGTGAAACATTACGGGAGG
AAACGCCTTTCTACTCGTAGCTTTGGAGCTAAGAGCCCCCCTCACCGCCG
TTATACCGTTCATGCAGCACTTTTAATAACGACTACAAGTACCAGGTACC
GACCGACTAACGATGGGCCTGAAAATGTAATTGTCGTGCTTGCCTGTATG
GGAATCAACTGACGACACAGGTGTATCGCCTCGACAAACAGGTAGCAGAC
AACAACACCCTCTTCCGCCGACCAAAGCTTTCCCACGACGCGTGACACGG
ATCGCCGCCGACTCGAGCAACGACGGCGAAGGGCGGGATTCGGGGGCGGC
GCCAGGGGAGAACCCAAAGCAGGGGCAGGTACCGCCAATGCAGAACAACA
GTGAAGCTCCTGTGTTCTACATTAAGGGTCTGAAGGGCGGGGTCGGGGCA
ACAAGATATCAGGGAGATGATGCCGGCGAGGGAAGATCACAAATTGTTAC
ACAGAGGTCGGTGCCGGGGATGAGCGAAACAGGCGAGATTAGAGGAATGG
ATGGGGAAGACGACACGCCGATGTGGGATAAGGTCCAGCAGTCGCTGGGT
TTGGGTAAGTGGAGTTACATCGGACTGGGCCTCGCGCTGTTCATGATCAC
GCTTAATAACTTCCTTGGGCTGGGATGGCTGGGTCGAGCGATCAATCCGG
ACTTCGAACTCGTCGACGTGGAGAGCCAGCGGTCGCAGATTCAGGTCATG
CGGTTGGACGACTCAAGCAATCTTATTTCGCCTTCATCATCATCACAAGC
AGTGAAATGAGTTATGTAAAAAAGCATCGATGTCTCGTGAACGTGTGTTC
TGGTCGACCGTAAGAATATTTGGCCGAGGCCACGCTTGATCTTCCGGTCA
GTCAGAGAGAAATACTTGGATATCCTGCTG back to topCoding sequence (CDS) from alignment at F-distichus_contig10014:3582..10061- >mRNA_F-distichus_contig10014.20.1 ID=mRNA_F-distichus_contig10014.20.1|Name=mRNA_F-distichus_contig10014.20.1|organism=Fucus distichus monoicous|type=CDS|length=1242bp|location=Sequence derived from alignment at F-distichus_contig10014:3582..10061- (Fucus distichus monoicous) ATGGCAATCCTGGTATTGTTCTCCCATGAATCCTACGGATGGCTAAAACC TGATGGCAATCCTGGTATTGTTCTCCCATGAATCCTACGGATGGCTAAAA CCTGGTAGCAGACAACAACACCCTCTTCCGCCGACCAAAGCTTTCCCACG ACGCGTGACACGGATCGCCGCCGACTCGAGCAACGACGGCGAAGGGCGGG ATTCGGGGGCGGCGCCAGGGGAGAACCCAAAGCAGGGGCAGGTACCGCCA ATGCAGAACAACAGTGAAGCTCCTGTGTTCTACATTAAGGGTCTGAAGGG CGGGGTCGGGGCAACAAGATATCAGGGAGATGATGCCGGCGAGGGAAGAT CACAAATTGTTACACAGAGGTCGGTGCCGGGGATGAGCGAAACAGGCGAG ATTAGAGGAATGGATGGGGAAGACGACACGCCGATGTGGGATAAGGTCCA GCAGTCGCTGGGTTTGGGTAAGTGGAGTTACATCGGACTGGGCCTCGCGC TGTTCATGATCACGCTTAATAACTTCCTTGGGCTGGGATGGCTGGGTCGA GCGATCAATCCGGACTTCGAACTCGTCGACGTGGAGAGCCAGCGGTCGCA GATTCAGGTCATGCGGTTGGACGACTCAAGCAATCTTATTTCGCCTTCAT CATCATCACAAGCAGTGAAATGAGTAGCAGACAACAACACCCTCTTCCGC CGACCAAAGCTTTCCCACGACGCGTGACACGGATCGCCGCCGACTCGAGC AACGACGGCGAAGGGCGGGATTCGGGGGCGGCGCCAGGGGAGAACCCAAA GCAGGGGCAGGTACCGCCAATGCAGAACAACAGTGAAGCTCCTGTGTTCT ACATTAAGGGTCTGAAGGGCGGGGTCGGGGCAACAAGATATCAGGGAGAT GATGCCGGCGAGGGAAGATCACAAATTGTTACACAGAGGTCGGTGCCGGG GATGAGCGAAACAGGCGAGATTAGAGGAATGGATGGGGAAGACGACACGC CGATGTGGGATAAGGTCCAGCAGTCGCTGGGTTTGGGTAAGTGGAGTTAC ATCGGACTGGGCCTCGCGCTGTTCATGATCACGCTTAATAACTTCCTTGG GCTGGGATGGCTGGGTCGAGCGATCAATCCGGACTTCGAACTCGTCGACG TGGAGAGCCAGCGGTCGCAGATTCAGGTCATGCGGTTGGACGACTCAAGC AATCTTATTTCGCCTTCATCATCATCACAAGCAGTGAAATGA back to top
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