mRNA_F-distichus_contig100010.5.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig100010.5.1
Unique NamemRNA_F-distichus_contig100010.5.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig100010.5.1 vs. uniprot
Match: D8LSD0_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSD0_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 2.350e-9
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    7 ALLTRGGFFVMHRRFGFSRVRFVWMSEDLETILWR 111
            ALLT+GGFFVMH RFG  ++RFVWMS DL TILWR
Sbjct: 1105 ALLTKGGFFVMHGRFGNPQMRFVWMSHDLGTILWR 1139
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BLAST of mRNA_F-distichus_contig100010.5.1 vs. uniprot
Match: A0A6H5L078_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L078_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 3.210e-9
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    7 ALLTRGGFFVMHRRFGFSRVRFVWMSEDLETILWR 111
            ALLT+GGFFVMH RFG  ++RFVWMS DL TILWR
Sbjct: 1242 ALLTKGGFFVMHGRFGNPQMRFVWMSPDLGTILWR 1276
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100010.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSD0_ECTSI2.350e-977.14Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L078_9PHAE3.210e-977.14Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig100010contigF-distichus_contig100010:120..233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue2e-07
Seed eggNOG ortholog2880.D8LSD0
Preferred namekinesin-F
KEGG koko:K10397,ko:K10400
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005871,GO:0005875,GO:0006928,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0015630,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG4280@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons1
Model size114
Cds size114
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928917.1335957-CDS-F-distichus_contig100010:119..2331622928917.1335957-CDS-F-distichus_contig100010:119..233Fucus distichus monoicousCDSF-distichus_contig100010 120..233 +
1690885059.164958-CDS-F-distichus_contig100010:119..2331690885059.164958-CDS-F-distichus_contig100010:119..233Fucus distichus monoicousCDSF-distichus_contig100010 120..233 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig100010.5.1prot_F-distichus_contig100010.5.1Fucus distichus monoicouspolypeptideF-distichus_contig100010 120..233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig100010.5.1

>prot_F-distichus_contig100010.5.1 ID=prot_F-distichus_contig100010.5.1|Name=mRNA_F-distichus_contig100010.5.1|organism=Fucus distichus monoicous|type=polypeptide|length=38bp
NVALLTRGGFFVMHRRFGFSRVRFVWMSEDLETILWR*
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mRNA from alignment at F-distichus_contig100010:120..233+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig100010.5.1 ID=mRNA_F-distichus_contig100010.5.1|Name=mRNA_F-distichus_contig100010.5.1|organism=Fucus distichus monoicous|type=mRNA|length=114bp|location=Sequence derived from alignment at F-distichus_contig100010:120..233+ (Fucus distichus monoicous)
AACGTCGCGCTCTTGACGAGAGGTGGTTTCTTCGTCATGCACAGGAGGTT
CGGTTTCTCGCGAGTACGGTTCGTCTGGATGTCTGAGGATCTAGAAACAA
TTTTGTGGAGGTGA
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Coding sequence (CDS) from alignment at F-distichus_contig100010:120..233+

>mRNA_F-distichus_contig100010.5.1 ID=mRNA_F-distichus_contig100010.5.1|Name=mRNA_F-distichus_contig100010.5.1|organism=Fucus distichus monoicous|type=CDS|length=228bp|location=Sequence derived from alignment at F-distichus_contig100010:120..233+ (Fucus distichus monoicous)
AACGTCGCGCTCTTGACGAGAGGTGGTTTCTTCGTCATGCACAGGAGGTT
CGGTTTCTCGCGAGTACGGTTCGTCTGGATGTCTGAGGATCTAGAAACAA
TTTTGTGGAGGTGAAACGTCGCGCTCTTGACGAGAGGTGGTTTCTTCGTC
ATGCACAGGAGGTTCGGTTTCTCGCGAGTACGGTTCGTCTGGATGTCTGA
GGATCTAGAAACAATTTTGTGGAGGTGA
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