EsuBft1069_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1069_2a-0001
Unique Name	EsuBft1069_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_315	contig	Scaffold_315:62634..63799 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1069_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	116
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1069_2a	EsuBft1069_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_315 62634..63799 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1069_2a-0001-exon	EsuBft1069_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_315 62634..63799 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1069_2a-0001-cds	EsuBft1069_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_315 62634..62786 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1069_2a-0001-exon	agat-three_prime_utr-664	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_315 62787..63799 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1069_2a-0001	EsuBft1069_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_315 62634..62786 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_315:62634..63799+
coding sequence from alignment at Scaffold_315:62634..63799+

spliced messenger RNA

>EsuBft1069_2a-0001 ID=EsuBft1069_2a-0001|Name=EsuBft1069_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1166bp|location=Sequence derived from alignment at Scaffold_315:62634..63799+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGCTTTGGTTGAGCGTTCTTCTTCATTGTATGTCCACGGACTNCT
GCGGCGCACCCGCCGCGAGGCGTGCGTAGTGGTGGAGTTGGGTCGGCATC
GGTGCGTCATGTACAGAGGTGCAGATGCGCGGGCCTCCAGGCCGTCGGTG
TAGGCAGCAATGCCCATCTCATCTTTGTGCGCGGAGGCAGACGTCATCAG
AAAGGTGGACGGGCACTATGTACACGGCCCTAGGATTGCTAGAGGGAGCT
GTACTGTCTCAGTAACTTGGTTGTACCATCAAAGGAGGAGGGGACAGGCG
GTGACGAGCTGATTGGGCTGGTTGACCCTTCGACGCGAGAATTTTCAGAC
CAAGAATCCTAAGTGCAACGAGGGAGAAAGCGAGGAACCGACTGGGAAGA
ACAGCAACGAGAGCGTGTACGAAGCGGAGCGGGTCGAGTTTGGTCGTGCT
AGGACTGGCCACAGTGGAACCGGAGCAGGTGGACGGCATCGAACCGTGGC
GCACGGACAACATCTCTTGTGTAATCAATTATTTTCCCGTTTTTTTCCTA
AATACAGGTGTTGGGTGTGTGTGACGTCACTGGTTTTGTAGAGAGACGTG
GCAGAGACGGCGCGGATAACCCGGGTGCTTTTTATTGTGTACCTGCATCG
TGGAAGACCCGTTCAATGTGGAACGATTCCTAGTCAGTGTCGATGTTCAC
ACTGCTGTGCCTAACACAGATTATCTGGATAGATTCGGGTGATTGTTAAT
TGCAATGATGGCTTTGGTTGAGCGTTCTTCTTCATTGTATGTCCACGGAC
TGACTCATTCTGACAGCACTTCAGACAGCAGCTCCATGCCCCGAGCTTGT
GTACTATGCACCATGGTGTTATTATTCTACAGACAGCACTGCAGACAGCA
GTGCGCTGTAGTCGACAAACATTCATTTTGGTGAAATTCGGGACAATGGG
GGGGGGTGATGCTGCTGCTGTAGTCGATTTGTAGTGTGTGGGCGTGTAGT
TCAGTTGTGAGCACGCAAACGTGCTGTACGGATTGCAGGTGTACCTCCTC
GGGCTTGCGTACCCTTTTCTTGCTAATAGTGTGTGTGTTCTTTAGATCTT
CTGATGGCCCTAGCATTTTTGTGACCATGGGCCGAGTCTTTACTAGATTT
TTGGGACTAGCATCTG

protein sequence of EsuBft1069_2a-0001

>EsuBft1069_2 ID=EsuBft1069_2|Name=EsuBft1069_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MMALVERSSSLYVHGLLRRTRREACVVVELGRHRCVMYRGADARASRPSV

mRNA from alignment at Scaffold_315:62634..63799+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1069_2a-0001 ID=EsuBft1069_2a-0001|Name=EsuBft1069_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1166bp|location=Sequence derived from alignment at Scaffold_315:62634..63799+ (Ectocarpus subulatus male Bft15b)
ATGATGGCTTTGGTTGAGCGTTCTTCTTCATTGTATGTCCACGGACTNCT
GCGGCGCACCCGCCGCGAGGCGTGCGTAGTGGTGGAGTTGGGTCGGCATC
GGTGCGTCATGTACAGAGGTGCAGATGCGCGGGCCTCCAGGCCGTCGGTG
TAGGCAGCAATGCCCATCTCATCTTTGTGCGCGGAGGCAGACGTCATCAG
AAAGGTGGACGGGCACTATGTACACGGCCCTAGGATTGCTAGAGGGAGCT
GTACTGTCTCAGTAACTTGGTTGTACCATCAAAGGAGGAGGGGACAGGCG
GTGACGAGCTGATTGGGCTGGTTGACCCTTCGACGCGAGAATTTTCAGAC
CAAGAATCCTAAGTGCAACGAGGGAGAAAGCGAGGAACCGACTGGGAAGA
ACAGCAACGAGAGCGTGTACGAAGCGGAGCGGGTCGAGTTTGGTCGTGCT
AGGACTGGCCACAGTGGAACCGGAGCAGGTGGACGGCATCGAACCGTGGC
GCACGGACAACATCTCTTGTGTAATCAATTATTTTCCCGTTTTTTTCCTA
AATACAGGTGTTGGGTGTGTGTGACGTCACTGGTTTTGTAGAGAGACGTG
GCAGAGACGGCGCGGATAACCCGGGTGCTTTTTATTGTGTACCTGCATCG
TGGAAGACCCGTTCAATGTGGAACGATTCCTAGTCAGTGTCGATGTTCAC
ACTGCTGTGCCTAACACAGATTATCTGGATAGATTCGGGTGATTGTTAAT
TGCAATGATGGCTTTGGTTGAGCGTTCTTCTTCATTGTATGTCCACGGAC
TGACTCATTCTGACAGCACTTCAGACAGCAGCTCCATGCCCCGAGCTTGT
GTACTATGCACCATGGTGTTATTATTCTACAGACAGCACTGCAGACAGCA
GTGCGCTGTAGTCGACAAACATTCATTTTGGTGAAATTCGGGACAATGGG
GGGGGGTGATGCTGCTGCTGTAGTCGATTTGTAGTGTGTGGGCGTGTAGT
TCAGTTGTGAGCACGCAAACGTGCTGTACGGATTGCAGGTGTACCTCCTC
GGGCTTGCGTACCCTTTTCTTGCTAATAGTGTGTGTGTTCTTTAGATCTT
CTGATGGCCCTAGCATTTTTGTGACCATGGGCCGAGTCTTTACTAGATTT
TTGGGACTAGCATCTG

Coding sequence (CDS) from alignment at Scaffold_315:62634..63799+

>EsuBft1069_2a-0001 ID=EsuBft1069_2a-0001|Name=EsuBft1069_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=153bp|location=Sequence derived from alignment at Scaffold_315:62634..63799+ (Ectocarpus subulatus male Bft15b)
ATGATGGCTTTGGTTGAGCGTTCTTCTTCATTGTATGTCCACGGACTNCT
GCGGCGCACCCGCCGCGAGGCGTGCGTAGTGGTGGAGTTGGGTCGGCATC
GGTGCGTCATGTACAGAGGTGCAGATGCGCGGGCCTCCAGGCCGTCGGTG
TAG