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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 2880.D7FK42 |
ProteomeId | EsuBft1024_7 |
Protein domains | IPR002298 |
Protein domains | IPR019760 |
Protein domains | G3DSA |
Protein domains | PTHR10133 |
Protein domains | IPR001098 |
Protein domains | SSF56672 |
Owner | apollo_admin@sb-roscoff.fr |
Note | dna polymerase i os:pseudomonas aeruginosa (strain atcc 15692 pao1 1c prs 101 lmg 12228) gn:pol [Automatic annotation] |
Nb exon | 9 |
Max annot lvl | 2759|Eukaryota |
Length | 1289 |
Hectar predicted targeting category | other localisation |
Evalue | 2.4e-168 |
EggNOG OGs | COG0749@1|root,KOG0950@2759|Eukaryota |
Date last modified | 2016-06-14 |
Date creation | 2016-06-14 |
Preferred name | POL1A |
KEGG rclass | RC02795 |
KEGG ko | ko:K02335,ko:K02349 |
KEGG Reaction | R00375,R00376,R00377,R00378 |
KEGG Pathway | ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440 |
EC | 2.7.7.7 |
Description | plastid DNA replication |
COG category | L |
BRITE | ko00000,ko00001,ko01000,ko03032,ko03400 |
Cross References
External references for this mRNA
Database | Accession |
EC | 2.7.7.7 |
GO | 0008408 |
GO | 0008409 |
GO | 0003677 |
EC | 3.6.1.15 |
GO | 0005515 |
GO | 0003887 |
GO | 0005737 |
GO | 0006310 |
GO | 0017111 |
GO | 0006284 |
GO | 0009640 |
GO | 0006261 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1024_7a-0001 ID=EsuBft1024_7a-0001|Name=EsuBft1024_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1289bp|location=Sequence derived from alignment at Scaffold_308:252283..258475- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ACGCGTTTTCGGCGACGAGGTCGTTCACGCTCATGGCCGCCGACTACAGC CAAATAGAGATGAGGGTGCTCGCCGACGCTTGCCGAGACCCTGGGTTGAG GAACCTCTTCGCCACTCTCGGGGGCACGAACGACGCGGGTGCTGGCACTG GCGGGGGCGACGTGTACAGAAAACTGGCTGCGCAGGTGTTCGGCAAGGAG GAACAAAGCGTCAGCGACGAAGAGCGGAATCGCGCCAAGGTGGTTTGCCT GGGAATCACCTACGGTATGGGAACTCCGCAGGTGGCGAAAAAGCTAGAGA TCACCGAGAGTCAGGCCCAAGGGCTCGTGCGGTCATTCCTGAAAGCCTTT CCCGGGATCGAGCCCTTCATGGCCGCCACACGCAGGTTCGCGAGGGAGAA CGGCTATGTTTGCACCCTGACGGGACGGCGCCGACACCTGCCCGAGATCA ACAACTCTCGCAACGCGGCCGCGAAGGCGCAGGCGGAGAGGCAGGCGGTC AACAGCGTTGTCCAGGGTACCGCGGCCGACATCATGAAGACGGCCATGGT GCTGGTGGCCCGTCGTCTCGATGCTTGGCGGTCTCGCCTGGATGAGGGCC TTGACTGTCCCAGGCTCATCATGCAGATCCACGACGAACTTGTTCTCGAG TGCCCGGCCTGTGAGGAAGACCTGGAGAAACTCAAGGGTTTGCTGGCCGA CTGCATGGAGGTGGAAGCTCCGGCGGTGCTGGGCATCAAGTGCCCGCTGA CAGTCAACATGCTAGTGGGCATGTCATGGGGCAGCATGAGGAGGGTCGTA TCTCACGACGAGGATGACGACGATAGCGAGTAGCCTTGATTGTATGTGCG ATGGTGTGGTTTGCACATGGTAGACTGCGCGACGGGCCTGCTCGACATGA AACATTGGTTGTGTGTGCGGGCGCGTATCCCGCTCATTTTTTTTCCTACA AAAGGCGTTGTTTGGAATTGGTCCCAAGATGACAACGGTAGCGACAACGA TATCGACGTTGATTGATTTGTCTCTGTTGTTTGTGCCTTGTTTTATTTCT CGTCCTAGAACTTCCTTGTCGCAAAAGTTGAGTTGAGCAAAACGTTGTTG CTGGGTGCAACTAAGATTTTCACCGTTGACTGCACCCTCGTTTTTGCGGG GAAAGGCAACATTACTCTCATTTGTACTGCTTGCAGTGTGGTCGACGTCG TGTTGTACGCAATGTATTGCACCACGTTGGTTTGCGTGTGGAGCGGACTT GAGCAACGTGTTCTCCTGTGCTGCATATGTACGTGGGAC back to topprotein sequence of EsuBft1024_7a-0001 >EsuBft1024_7 ID=EsuBft1024_7|Name=EsuBft1024_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=266bp
MAADYSQIEMRVLADACRDPGLRNLFATLGGTNDAGAGTGGGDVYRKLAA QVFGKEEQSVSDEERNRAKVVCLGITYGMGTPQVAKKLEITESQAQGLVR SFLKAFPGIEPFMAATRRFARENGYVCTLTGRRRHLPEINNSRNAAAKAQ AERQAVNSVVQGTAADIMKTAMVLVARRLDAWRSRLDEGLDCPRLIMQIH DELVLECPACEEDLEKLKGLLADCMEVEAPAVLGIKCPLTVNMLVGMSWG SMRRVVSHDEDDDDSE back to topmRNA from alignment at Scaffold_308:252283..258475- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1024_7a-0001 ID=EsuBft1024_7a-0001|Name=EsuBft1024_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6193bp|location=Sequence derived from alignment at Scaffold_308:252283..258475- (Ectocarpus subulatus male Bft15b) ACGCGTTTTCGGCGACGAGGTCGTTCACGCTCATGGCCGCCGACTACAGC
CAAATAGAGGTTCGTGTGCGTCCCTTCTTACCGGTTCAAGCGACCGTCGG
GCCGGGCGATGTGGCTGATCGTAGCCAGTCTTCACTCCCAGTAGTTCTTC
CTCTGTTGTCCTCTTGAGAACTCGTCTTCATGCCATCCCCCCCCCCCCCC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCCCCCCCCCCCCCCAAATGCTATCAAACAAGATGAGGGTGCTCGC
CGACGCTTGCCGAGACCCTGGGTTGAGGAACCTCTTCGCCACTCTCGGGG
GCACGAACGACGCGGGTGCTGGCACTGGCGGGGGCGACGTGTACAGAAAA
CTGGCTGCGCAGGTGCGTGGAGCGTATTCCACTGATGCTTGTAGTTTGAC
GCTTGTCACCCCCCCCCTCCTCTCTCTGGTTCGTAGCTATGCTGCGCGTT
TGGGCTGTATATCCGTGTTATGCCTCTGTTGCGCAGGTGTGGGGTTGTTG
TGTTGGGGTCATTTGACAAACAAGACGGGACGTTTGTTGTTTGAACGCGA
GATTGGCAATCGCCCAGGTGCATCGTACACACGTCCATTACCAACGTCCA
TTGTATCTTCAAAGCACTCTGTTGCCACACACGACGCACCCCTCACTTCC
GGTGGATGCAAAAAACGTGCATGTCCGAGGATGACAATGTGACACAAGGA
AGAATCGCAGGTGATAGGCATGTTGGGGACGTTTCAGTTGGAGCATGAGC
AGCGGTTCTAAAATGTGAGCGTTTCCGTTTCCCATACCTTCGGCGTGTAG
AGACAAGGCTTGTGAGCAGTCTCTGGTGTGTGCGAGTCCATCATCTCGGA
CCGCGTAGGAGGCCATGTTTTTTTCGAATGTCTGGTGAATGTGGGCGGAG
CTTCACACCGAATGCAGAGTCTGTGGGAGAGATGCATTGAGCGTTGGATA
TATGACCCCGGATCACAGTGACTGTAGCCAAAGGGAGAACGTGGATATCA
AAATGAGGAAAGGAAAGAATTCGGAAGTGTGAAGTGGGGAGCCGGGCGAA
GAACCAAATTCCAGACTCGAGCGCACAGAGATTGTCTCACAACGCTAGCT
AGTCCTCTGCCTCTTGTTAGGCTGGAAGGAGTTCAGCGTGCCTGTGATGA
GTTTGACATACGTGATGGACTTGACAAGAGGTTCGGTTCTACGAAAACGT
CATGACACACGTTCCTAGGTGTTCGGCAAGGAGGAACAAAGCGTCAGCGA
CGAAGAGCGGAATCGCGCCAAGGTGGTTTGCCTGGGAATCACCTACGGTA
CGCGACCGGCAAATTTGTTGACGATTGTCTCGAAACCTTCCGCGCAGAGA
TTCGTTATTTTATGTTGTTCCCTTCGATCGTGTAGAGATTTTCGTGGTCG
TGACCCTCACATGCTCTCGCCCGCTCGCCCGGTAGTGTTTTTGCGCGGGC
CTACCGGGAGGGGCAGTGTAAAGTGGGATTCGGTGTTGAATTTCGGGTTG
TTGTCGTTGCATCAGGGACATCTGTGTTGGGTGCAATTGTCCGTTGTCCT
CTTGGTTCGCTGTCCCAGGGAACGCTTCTCCTTCAGTGCTGTCTGTGTTT
CGTCCTTTCCTTCGGTTGTATACCCTCCGTATCATGTCGTGCCCGAGCAG
CAAGAGTCAAGAAGGAAGAAGGCGGAAATGTCTACTAGTTGGTCGTACTC
GCCGAGGTGTTCTGAAAAATCTGGTTCAATCCCCTACTGAAACATCCGAT
CTCCGACTTTCCACTTCTCTCTCTACACGACGTGCGTGGCCTCTCAATAT
ACTGAGGACAAACCTCGAGACCCCTATCTTACACCTAGTGACGGCACAAT
CGATCGCGAGGATCATCCGACGTTGCCACGATACGCGCCGCCAAGCATTG
CAGACTCCTGTACATACGTCCTACGTTGCTGTTATTGACGCCTCCTATTG
CTCGGAAATTGAAGTATTGTCGCGCTCTCAAGTGTCTGTCTGTCTTACAG
TACTACATCGTGAAGTTGACGCCACCACAGTGCAATCGCCAAAGTTCACT
CTCGCTGTTGAAACATCGCAGGTATGGGAACTCCGCAGGTGGCGAAAAAG
CTAGAGATCACCGAGAGTCAGGTGGGTGCGCGTGCCTGACCTCCATGGCC
GTTCAAGTGTGGGCTTCCTATAAGTGAACGATTTCGTGTTACATGGACGA
GCCCGACGCCCAGATGGGAAGTTGTTCTTGGTGCTGTCCGTTTTTGGTTA
TTGGTACTCGTTGTCATGAGGTGTGCGAAACGCCACACCCGAGAGTTGCA
GCGAAAAGAAACAGGTTTCCGGAAGAACGACGATTATCTGCATCAAAAGT
GAATGCCCCACAGCGGTTTTGATGGCGTGGGCTGCCTGCTGATTGTCACA
ACAGCATGATTGTCTGACCCCAGGCACCGGAACGCCATGATCCAAACGAC
CTAGCTCATTGGCCGGGACGCTGTAAACTACGTCCATATGGCCGAAACCC
GCTGTAGGGTAGACATGCACAGTATTTCTGTTGAACATGAAGTGAGGTGG
TGAAGCGTCTTGTAGAGTGAGTACTTGTAACGGCTTGTGTGGCCTCGACG
AGAGCTCTAGCGCCGCACTAAACCAACGTAGTATATCGACTTGTTCTGCT
AATTGACGAAAGCAACTCGATACTGTGGACTGGTTCCTAGACTATTGCAT
CCTATCTGGTAGCCTGATACCTTTTGCTTGTTGACGAATTGTTGAAAAAC
ACGACGATGAGTGCTGCCTTTTGCCTACCTCTTTCGGCGCAGACCATCAA
GAATTGCCGAATATCATCAATAGGAAACGTCTGTCCTGTAGTAGCAGAAG
CCGAAATTCAATACTGATGCCGCGCCCGCCATACCTATAACGCCTGCTTG
CGGGCACGAAATAATCTACGGCACGTGTTCCACGGCCAGCAGAACAACGA
GTGCCTCTCAGTAATTCCCGATTCCGCCGCGCAAACTGTTGTTCTACCTG
TAGGCCCAAGGGCTCGTGCGGTCATTCCTGAAAGCCTTTCCCGGGATCGA
GCCCTTCATGGCCGCCACACGCAGGTACGGCACACCGTGCAGACACCAAA
GCTCTCAGCGAAGATTAGCTAGACTATTTGCGAAGGGCGAGAAAAATGAT
GAGCACTAACAGATCCGCGGGGAGTTTTTTTGTTTTGTGATTAGCAGCTG
CGAAGGTACATACACACAAGACGATAAAGTTGGCGTGGTTTCAAGACTGA
GGATTGACATCGGTCATTTCTTTTTCATCTGTGGCCAAAGGTTCGCGAGG
GAGAACGGCTATGTTTGCACCCTGACGGGACGGCGCCGACACCTGCCCGA
GATCAACAACTCTCGCAACGCGGCCGCGAAGGCGCAGGCGGAGAGGCAGG
CGGTCAACAGCGTTGTCCAGGTGTGCCGTCCTTCTCCCACTTTGTGGTGT
TCCTGGTTGCACTGCTCGTGGTGTCGTGTCTGTTTCTGGACATCGTTACG
CACATGCTACGATCCGCTTGGACGTCGAACGGTACCACAACGCTAAACGC
GAACGCGGAGAGAGGCAGGCCGTCAACGGCGGGTTTCAGGCGTTTGGTGT
TGATGCGTCGTTTCATTGTGTTCTCTGTCGGTTTCCTATTTTGAAAGTAA
TCTTGAAAGGTAGCAAGGAGCTTGTGAAAGGCAGAACGGAGCACCAACAG
CATGCTCCGCCTGCATGTTCGTGTATGCGTAAAATACTGCGAGCGGTGTT
TCCGACTGGTGTTTTGTCCGGACATTCGGGGTCGTGGTCGGCTTATGTTT
TCGTTGGATGCACAGGGTACCGCGGCCGACATCATGAAGACGGCCATGGT
GCTGGTGGCCCGTCGTCTCGATGCTTGGCGGTCTCGCCTGGATGAGGGCC
TTGACTGTCCCAGGCTCATCATGCAGGTGCGGCGCGCAGCGATGAAATCA
AGCCAGGAATTGCATCCTGGAATATTTTCAAGTATATAAACCGAGGAGCA
CTGTGTGAAAAAATATGCATATTTCCCGAGATATCTACACGAGTCATAAG
TCACCGAACAACACGCCAAGGGGACAATCCAAACCACGGAGTATATTTAT
GTCATGCATCCTTCAGGTGTAGCAAACACTAACCGTCTGTTACTCGGGCG
AGCGAGACATCTTGCACCATCACTGAGGATTCAACGCAACCAAGAGGACC
CGCTGTGGTGGAGTACTTGTACTTCGCATCCTGCACCGCATTTGTACAGA
GAGCACCAATCCTTCAAGGGTCCCAAAGTTTTTCTTTCGGGGTTAGCTGG
GGTCCTGAACTACTCTTTTTGTCAGGAATGCGCCCTGGCAAGCCCACGTG
CGGCAAGCGAATACCACCACCTATTCACGAAAACGCAACGCTTTCGTGAC
ACCAAGAACGTTCCTATATATGGCGATCCCCAGGATTTGCTGCGGCAGTC
TTCGGGCCAGGGACATGCCCCCGTGTGATTCACGTTATGTCTCCTTGGTT
TGTGGAGGCGGTGCCCTTTATTCCCTCTTGCCCTCCATGGTTTCAACACA
TGTCATCAATTCTTTCGCGTGTCCTTGTTTCAGGTGAATTCACGCTAAAC
ATGAACCCCGAATTCTCTTCAATTGCAACCTTTCGCCAATGAATCATCCG
TCTCTACGGTTCTCGTCTTAACCATCGCCCATTCTTGGCCATTTTTCCCC
GGAGCATATGCGCTGGGCATAACACATGAAACACTCCGTCTACCAACACA
ATCCCGTTTGCTTCTGGTAGAGTTTCTGTCGACAACCAAGCCCGAGTTGC
CCGGAATCATAGAGCATTTGAGCAAGAACGATCAACTGCTGTGTAGTCTC
CATGACGTTTGTCTTTTTCTATAACATTGTGTGTGGACGGCTTTCGCAAC
GCGAACGTTTTGTCGGGAGGAGCGTTAGATCCACGACGAACTTGTTCTCG
AGTGCCCGGCCTGTGAGGAAGACCTGGAGAAACTCAAGGTATGTCGTAGC
TTGACTTGATGCACCGTCTTAACTTTCAGCACTCCTCCTTCAGTTACCGA
CTACTCCTTCCATTTCATATGCCTCGGCGTATCTTGGCATTATTTTTGAA
TATCCGCTGCGTGTGCATACGAGAATTAGGCATATTGTGTCTCAGCACTG
TACAGTGCAGATCGCAACATGTGAACGTGCCGACCTCCACCTGGAAATAG
GGGTGGGCGGAAGTTTCCAAGATGTTTTGGAGTTTCAGGTGACCCACAGT
ACATCTACCCGATATCGTTCGTGTTGGGGGGTGAACACGTTGGTGGCAAG
ATATCAGTCCGACACACGGTTTTTGGGGTAGTGGTAGTATCAGCGACGTG
CATGATGTTGACACAAAGGCCGGTAGAAATGTGTGCGATGGGCAGGCACT
ACTGCCCATGTAGACTTGGCACCCTCTCTCCGTTTCGGTCTCATTCTAGG
AGTCGCTGGCAGATTGCATGGGTATTGAACAACGTGACTGACGCTGCTGT
TGGTTATGTCGCGACTAACGCTCAAGCTTGGTTTCTCCAGGGTTTGCTGG
CCGACTGCATGGAGGTGGAAGCTCCGGCGGTGCTGGGCATCAAGTGCCCG
CTGACAGTCAACATGCTAGTGGGCATGTCATGGGGCAGCATGAGGAGGGT
CGTATCTCACGACGAGGATGACGACGATAGCGAGTAGCCTTGATTGTATG
TGCGATGGTGTGGTTTGCACATGGTAGACTGCGCGACGGGCCTGCTCGAC
ATGAAACATTGGTTGTGTGTGCGGGCGCGTATCCCGCTCATTTTTTTTCC
TACAAAAGGCGTTGTTTGGAATTGGTCCCAAGATGACAACGGTAGCGACA
ACGATATCGACGTTGATTGATTTGTCTCTGTTGTTTGTGCCTTGTTTTAT
TTCTCGTCCTAGAACTTCCTTGTCGCAAAAGTTGAGTTGAGCAAAACGTT
GTTGCTGGGTGCAACTAAGATTTTCACCGTTGACTGCACCCTCGTTTTTG
CGGGGAAAGGCAACATTACTCTCATTTGTACTGCTTGCAGTGTGGTCGAC
GTCGTGTTGTACGCAATGTATTGCACCACGTTGGTTTGCGTGTGGAGCGG
ACTTGAGCAACGTGTTCTCCTGTGCTGCATATGTACGTGGGAC back to topCoding sequence (CDS) from alignment at Scaffold_308:252283..258475- >EsuBft1024_7a-0001 ID=EsuBft1024_7a-0001|Name=EsuBft1024_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=801bp|location=Sequence derived from alignment at Scaffold_308:252283..258475- (Ectocarpus subulatus male Bft15b) ATGGCCGCCGACTACAGCCAAATAGAGATGAGGGTGCTCGCCGACGCTTG CCGAGACCCTGGGTTGAGGAACCTCTTCGCCACTCTCGGGGGCACGAACG ACGCGGGTGCTGGCACTGGCGGGGGCGACGTGTACAGAAAACTGGCTGCG CAGGTGTTCGGCAAGGAGGAACAAAGCGTCAGCGACGAAGAGCGGAATCG CGCCAAGGTGGTTTGCCTGGGAATCACCTACGGTATGGGAACTCCGCAGG TGGCGAAAAAGCTAGAGATCACCGAGAGTCAGGCCCAAGGGCTCGTGCGG TCATTCCTGAAAGCCTTTCCCGGGATCGAGCCCTTCATGGCCGCCACACG CAGGTTCGCGAGGGAGAACGGCTATGTTTGCACCCTGACGGGACGGCGCC GACACCTGCCCGAGATCAACAACTCTCGCAACGCGGCCGCGAAGGCGCAG GCGGAGAGGCAGGCGGTCAACAGCGTTGTCCAGGGTACCGCGGCCGACAT CATGAAGACGGCCATGGTGCTGGTGGCCCGTCGTCTCGATGCTTGGCGGT CTCGCCTGGATGAGGGCCTTGACTGTCCCAGGCTCATCATGCAGATCCAC GACGAACTTGTTCTCGAGTGCCCGGCCTGTGAGGAAGACCTGGAGAAACT CAAGGGTTTGCTGGCCGACTGCATGGAGGTGGAAGCTCCGGCGGTGCTGG GCATCAAGTGCCCGCTGACAGTCAACATGCTAGTGGGCATGTCATGGGGC AGCATGAGGAGGGTCGTATCTCACGACGAGGATGACGACGATAGCGAGTA G back to top
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