EsuBft1100_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1100_7a-0001
Unique NameEsuBft1100_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_307contigScaffold_307:48..1140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog13735.ENSPSIP00000000063
ProteomeIdEsuBft1100_7
Protein domainsPTHR19446
Protein domainsSSF56672
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noteline-1 retrotransposable element orf2 protein os:homo sapiens pe:1 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl33208|Metazoa
Length699
Hectar predicted targeting categoryother localisation
Evalue3.48e-21
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3A35Z@33154|Opisthokonta,3BQYF@33208|Metazoa,3D7GC@33213|Bilateria,48ICJ@7711|Chordata,49G95@7742|Vertebrata,4CMJX@8459|Testudines
Date last modified2016-06-14
Date creation2016-06-14
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
EC2.7.7.49
EC3.1.21.4
GO0003964
GO0009036
GO0032199
GO0000737
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1100_7aEsuBft1100_7aEctocarpus subulatus male Bft15bgeneScaffold_307 48..1140 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1100_7a-0001-exonagat-exon-6808Ectocarpus subulatus male Bft15bexonScaffold_307 48..613 -
EsuBft1100_7a-0001-exonEsuBft1100_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_307 1008..1140 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1100_7a-0001-cdsEsuBft1100_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_307 48..515 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1100_7a-0001-exonagat-five_prime_utr-615Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_307 516..613 -
EsuBft1100_7a-0001-exonagat-five_prime_utr-616Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_307 1008..1140 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1100_7a-0001EsuBft1100_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_307 48..515 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1100_7a-0001 ID=EsuBft1100_7a-0001|Name=EsuBft1100_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=699bp|location=Sequence derived from alignment at Scaffold_307:48..1140- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTGCAAGAAGGGTGACCGGTCCAACTGTAACAACTACAGGGGGGATTTC
GCTACTATTTCACGTAGCCAAGGTCCCCATCAAGATCATCACCAACCGTC
TAAGCGCCTTCTGCGAAGCCAACAACATCCTCTGAACAGTGCGGATTTCG
ACCCGGGCGATCCACCGTCGACATGCTGTTCGTCGTGCGCCGCCTCCACG
AGCTGGGCGGAGAAAGAAAATACCGCTCTACATGTGGTTCGTCGACTTGA
ACAAGGCGTATGATTTGGTGGACCGAGATATGCTATGGAAGGTGCTGGCC
AGGGCCGGGATTCCCGCGAAGCTGATCGAAGTCATCCGCCAATTCCACGA
TGGAATGCGGGCCCGGGTGCGCATGGACGACGGAGAACTATCGGACTGGT
TCTTCGTGACACAGGGCGTGCGACAAGGATGTGTGCTATCCCCACTGCTG
TTCAACATCTTCTTCGCCGAGGTCCTCGAGGTCGTTGTCATCCGATTCAG
CGAGGATGATGTTGTTCTGCGGAGCCTGGTGTGCTTGGAGGAGGGGAAGA
CGGAAGCGGGGGGGGGGGAGGAGACACCCCTTGACCGAGTACGGAGGGCA
GTATGGGGGATGCTGTATGCCGATGATCCCGGCGTCGTATCGAGGTCTAC
AGCAGGACTGGCGAGAATGATGACCATCACCGTTGAGGTAGTCGGGTAG
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protein sequence of EsuBft1100_7a-0001

>EsuBft1100_7 ID=EsuBft1100_7|Name=EsuBft1100_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=155bp
MWFVDLNKAYDLVDRDMLWKVLARAGIPAKLIEVIRQFHDGMRARVRMDD
GELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEVVVIRFSEDDVVLRSLV
CLEEGKTEAGGGEETPLDRVRRAVWGMLYADDPGVVSRSTAGLARMMTIT
VEVVG
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mRNA from alignment at Scaffold_307:48..1140-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1100_7a-0001 ID=EsuBft1100_7a-0001|Name=EsuBft1100_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1093bp|location=Sequence derived from alignment at Scaffold_307:48..1140- (Ectocarpus subulatus male Bft15b)
TGTGCAAGAAGGGTGACCGGTCCAACTGTAACAACTACAGGGGGGATTTC
GCTACTATTTCACGTAGCCAAGGTCCCCATCAAGATCATCACCAACCGTC
TAAGCGCCTTCTGCGAAGCCAACAACATCCTCTGTTAGGTAACTCGTGGC
TTGTAGAGAGGGGGTTGTTGGATAGTTGAGACTTGGTCTTATTAGTTGGT
TTGAAATGGGAGTGGGCAAGGTGAGGGCGTGCAGCACCCCTATCTGCCCG
ATTGCAATACCCCGACAACCCGATCACGAATCACATCACACTATCCCGAT
TCCCCGATCACGGGTAGTTTTACTCTTCCTACGAGCCACAAATACATCGG
AGGAAAGCACAAACCACCAACAGATTGCCCGACAGATACTTATACGAATG
TTCCACGGCGGAGCCTGCAGAACCGGAGAAACCTTCCAACGACAGTCCCG
CTAGTCAAGTCGTCCAATCAGATATACCCCGCCATTGAGTCGATACACCT
GCCGCTACCACGAACATCCTCCCGGAGGAACAGTGCGGATTTCGACCCGG
GCGATCCACCGTCGACATGCTGTTCGTCGTGCGCCGCCTCCACGAGCTGG
GCGGAGAAAGAAAATACCGCTCTACATGTGGTTCGTCGACTTGAACAAGG
CGTATGATTTGGTGGACCGAGATATGCTATGGAAGGTGCTGGCCAGGGCC
GGGATTCCCGCGAAGCTGATCGAAGTCATCCGCCAATTCCACGATGGAAT
GCGGGCCCGGGTGCGCATGGACGACGGAGAACTATCGGACTGGTTCTTCG
TGACACAGGGCGTGCGACAAGGATGTGTGCTATCCCCACTGCTGTTCAAC
ATCTTCTTCGCCGAGGTCCTCGAGGTCGTTGTCATCCGATTCAGCGAGGA
TGATGTTGTTCTGCGGAGCCTGGTGTGCTTGGAGGAGGGGAAGACGGAAG
CGGGGGGGGGGGAGGAGACACCCCTTGACCGAGTACGGAGGGCAGTATGG
GGGATGCTGTATGCCGATGATCCCGGCGTCGTATCGAGGTCTACAGCAGG
ACTGGCGAGAATGATGACCATCACCGTTGAGGTAGTCGGGTAG
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Coding sequence (CDS) from alignment at Scaffold_307:48..1140-

>EsuBft1100_7a-0001 ID=EsuBft1100_7a-0001|Name=EsuBft1100_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=468bp|location=Sequence derived from alignment at Scaffold_307:48..1140- (Ectocarpus subulatus male Bft15b)
ATGTGGTTCGTCGACTTGAACAAGGCGTATGATTTGGTGGACCGAGATAT
GCTATGGAAGGTGCTGGCCAGGGCCGGGATTCCCGCGAAGCTGATCGAAG
TCATCCGCCAATTCCACGATGGAATGCGGGCCCGGGTGCGCATGGACGAC
GGAGAACTATCGGACTGGTTCTTCGTGACACAGGGCGTGCGACAAGGATG
TGTGCTATCCCCACTGCTGTTCAACATCTTCTTCGCCGAGGTCCTCGAGG
TCGTTGTCATCCGATTCAGCGAGGATGATGTTGTTCTGCGGAGCCTGGTG
TGCTTGGAGGAGGGGAAGACGGAAGCGGGGGGGGGGGAGGAGACACCCCT
TGACCGAGTACGGAGGGCAGTATGGGGGATGCTGTATGCCGATGATCCCG
GCGTCGTATCGAGGTCTACAGCAGGACTGGCGAGAATGATGACCATCACC
GTTGAGGTAGTCGGGTAG
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