Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 164328.Phyra71794 |
| ProteomeId | EsuBft499_6 |
| Protein domains | IPR013103 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 1 |
| Max annot lvl | 4776|Peronosporales |
| Length | 986 |
| Hectar predicted targeting category | other localisation |
| Evalue | 8.22e-54 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,3QHW0@4776|Peronosporales |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003824 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft499_6a-0001 ID=EsuBft499_6a-0001|Name=EsuBft499_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=986bp|location=Sequence derived from alignment at Scaffold_30:353585..354570- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TGGAGGAGAGACGTGTGATCATGATCATGGTGGTCCACGTGGATGACATT
TTTGCTGTAGGGCAGAAGGAGAGGTGTGACAAGTTTGGCGAGGACCTCAA
CGAGATGGTCCCCGTGAAAAACCTTGGAGAGTTGAGGTGGTACTCTGCGT
GCTTTTACGAGAGAGACGTAGAGAGAGGGCTGTTGAGGATTTCGCAGCAG
AGGTTTGCCGAAGAGTTGGCTGCAGAGTACGGAATTGAGTGGGGGAGGAG
TGTGCCCTTGCCTGTGAGCGTGAAGCTCACCGACTTTGACGAGAACGAAG
CGTGCGCTGATGTCCCTTTTCGCGAGTTGGTAGGATCTCTGATGTGGTTG
GCCACTCAAACAAGGCCGGACATCGCGAACGCAGTACGAGCAGTAGCGCG
GTATTGTGCATCTCCCAAGATGGTGCACTGGAAGGCAGCACTCGGTATTT
TAGGGTACGTACGGAGGACGAGTTGGATGGGGATTACATTTGAGAGGGGA
GTGGTGACTGGGATGAGCATGCAGGTGTTTGTGGATGCCGACTATGCAAG
CAAGGCGACAGACCGTAGATCGGTGTCAGGAGGGCTAGTGATGTGTGGGG
GAGGGTGTGTGACTTGGTTTTCGAGGACACAAAAGTGTGTCACGCTTTCC
ACCACGGAAGCAGAGTATGTGGCAATTGCCGATGTCTTGAAGGAAGTGTT
GTTCCTGAGGCAGGTGTGGCGTTTTATGTTGCCAGATGCAGGTATGCCGT
GCATCCCGGTGTTCGAGGATAATCAGGGAGCGATTCAGATTGCGCACAAC
CCGATCACGAACTCCAACTCGAAACACATCGATGTACGACATCACTTTAT
CAGGGAGCTGGTAGAGAGGAAAGAGATTTCAATTACTAATGTGCCGACGC
CATTTCAGCATGCAGATTTCTTGACGAAGGCTATTAGCAAGGAGTCTTTT
GCGTTGCACCGTGACTTTGTGATGAACTTGCAGTGA back to topprotein sequence of EsuBft499_6a-0001 >EsuBft499_6 ID=EsuBft499_6|Name=EsuBft499_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=321bp
MIMVVHVDDIFAVGQKERCDKFGEDLNEMVPVKNLGELRWYSACFYERDV
ERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSVKLTDFDENEACADVPF
RELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRT
SWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWF
SRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFED
NQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADF
LTKAISKESFALHRDFVMNLQ back to topmRNA from alignment at Scaffold_30:353585..354570- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft499_6a-0001 ID=EsuBft499_6a-0001|Name=EsuBft499_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=986bp|location=Sequence derived from alignment at Scaffold_30:353585..354570- (Ectocarpus subulatus male Bft15b)
TGGAGGAGAGACGTGTGATCATGATCATGGTGGTCCACGTGGATGACATT
TTTGCTGTAGGGCAGAAGGAGAGGTGTGACAAGTTTGGCGAGGACCTCAA
CGAGATGGTCCCCGTGAAAAACCTTGGAGAGTTGAGGTGGTACTCTGCGT
GCTTTTACGAGAGAGACGTAGAGAGAGGGCTGTTGAGGATTTCGCAGCAG
AGGTTTGCCGAAGAGTTGGCTGCAGAGTACGGAATTGAGTGGGGGAGGAG
TGTGCCCTTGCCTGTGAGCGTGAAGCTCACCGACTTTGACGAGAACGAAG
CGTGCGCTGATGTCCCTTTTCGCGAGTTGGTAGGATCTCTGATGTGGTTG
GCCACTCAAACAAGGCCGGACATCGCGAACGCAGTACGAGCAGTAGCGCG
GTATTGTGCATCTCCCAAGATGGTGCACTGGAAGGCAGCACTCGGTATTT
TAGGGTACGTACGGAGGACGAGTTGGATGGGGATTACATTTGAGAGGGGA
GTGGTGACTGGGATGAGCATGCAGGTGTTTGTGGATGCCGACTATGCAAG
CAAGGCGACAGACCGTAGATCGGTGTCAGGAGGGCTAGTGATGTGTGGGG
GAGGGTGTGTGACTTGGTTTTCGAGGACACAAAAGTGTGTCACGCTTTCC
ACCACGGAAGCAGAGTATGTGGCAATTGCCGATGTCTTGAAGGAAGTGTT
GTTCCTGAGGCAGGTGTGGCGTTTTATGTTGCCAGATGCAGGTATGCCGT
GCATCCCGGTGTTCGAGGATAATCAGGGAGCGATTCAGATTGCGCACAAC
CCGATCACGAACTCCAACTCGAAACACATCGATGTACGACATCACTTTAT
CAGGGAGCTGGTAGAGAGGAAAGAGATTTCAATTACTAATGTGCCGACGC
CATTTCAGCATGCAGATTTCTTGACGAAGGCTATTAGCAAGGAGTCTTTT
GCGTTGCACCGTGACTTTGTGATGAACTTGCAGTGA back to topCoding sequence (CDS) from alignment at Scaffold_30:353585..354570- >EsuBft499_6a-0001 ID=EsuBft499_6a-0001|Name=EsuBft499_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=966bp|location=Sequence derived from alignment at Scaffold_30:353585..354570- (Ectocarpus subulatus male Bft15b)
ATGATCATGGTGGTCCACGTGGATGACATTTTTGCTGTAGGGCAGAAGGA
GAGGTGTGACAAGTTTGGCGAGGACCTCAACGAGATGGTCCCCGTGAAAA
ACCTTGGAGAGTTGAGGTGGTACTCTGCGTGCTTTTACGAGAGAGACGTA
GAGAGAGGGCTGTTGAGGATTTCGCAGCAGAGGTTTGCCGAAGAGTTGGC
TGCAGAGTACGGAATTGAGTGGGGGAGGAGTGTGCCCTTGCCTGTGAGCG
TGAAGCTCACCGACTTTGACGAGAACGAAGCGTGCGCTGATGTCCCTTTT
CGCGAGTTGGTAGGATCTCTGATGTGGTTGGCCACTCAAACAAGGCCGGA
CATCGCGAACGCAGTACGAGCAGTAGCGCGGTATTGTGCATCTCCCAAGA
TGGTGCACTGGAAGGCAGCACTCGGTATTTTAGGGTACGTACGGAGGACG
AGTTGGATGGGGATTACATTTGAGAGGGGAGTGGTGACTGGGATGAGCAT
GCAGGTGTTTGTGGATGCCGACTATGCAAGCAAGGCGACAGACCGTAGAT
CGGTGTCAGGAGGGCTAGTGATGTGTGGGGGAGGGTGTGTGACTTGGTTT
TCGAGGACACAAAAGTGTGTCACGCTTTCCACCACGGAAGCAGAGTATGT
GGCAATTGCCGATGTCTTGAAGGAAGTGTTGTTCCTGAGGCAGGTGTGGC
GTTTTATGTTGCCAGATGCAGGTATGCCGTGCATCCCGGTGTTCGAGGAT
AATCAGGGAGCGATTCAGATTGCGCACAACCCGATCACGAACTCCAACTC
GAAACACATCGATGTACGACATCACTTTATCAGGGAGCTGGTAGAGAGGA
AAGAGATTTCAATTACTAATGTGCCGACGCCATTTCAGCATGCAGATTTC
TTGACGAAGGCTATTAGCAAGGAGTCTTTTGCGTTGCACCGTGACTTTGT
GATGAACTTGCAGTGA back to top
|