EsuBft499_23a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft499_23a-0001
Unique NameEsuBft499_23a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_30contigScaffold_30:113939..117942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft499_23
Protein domainsSignalP-TM
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length258
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft499_23aEsuBft499_23aEctocarpus subulatus male Bft15bgeneScaffold_30 113939..117942 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft499_23a-0001EsuBft499_23Ectocarpus subulatus male Bft15bpolypeptideScaffold_30 115286..117245 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft499_23a-0001-exonagat-exon-76137Ectocarpus subulatus male Bft15bexonScaffold_30 113939..115757 -
EsuBft499_23a-0001-exonEsuBft499_23a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_30 116959..117402 -
EsuBft499_23a-0001-exonagat-exon-76136Ectocarpus subulatus male Bft15bexonScaffold_30 117620..117942 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft499_23a-0001-exonagat-three_prime_utr-17184Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_30 113939..115285 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft499_23a-0001-cdsEsuBft499_23a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_30 115286..115757 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft499_23a-0001-exonagat-five_prime_utr-10926Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_30 117246..117402 -
EsuBft499_23a-0001-exonagat-five_prime_utr-10927Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_30 117620..117942 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft499_23a-0001 ID=EsuBft499_23a-0001|Name=EsuBft499_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2586bp|location=Sequence derived from alignment at Scaffold_30:113939..117942- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGCGGCGACGGTCTGTGCAAACGCGGTGGCGGCTGCCGTGCAAGCGGATG
GGACTGGGGCAACGGGGGTGCGTGCAGGTTGAAAGTAGCCTCTCGCTTGG
TGCTCGCGGACGACGGTTTGGACGGTTGTTGACGGGCTAGACCCCCCTGC
AGGAGGCCCACCATCGAAGAAGCCGTACCCTCCGCAATCAGGACCAACGT
CCTTGAGAACTGCGGGACTTGGATCGCCCCCACCGTATTGGGGGGTGGGG
GGGCGAGGGTGCTGCGCTGCCGGAGCGCCCTAGAATCGGTGGTCAGACGA
CTGACGAAATCGGCCGAATCGAGGTTGGCGTCTTGCTTGAACCTGGCGAA
GACGTCGGCCTCGCGGCCCTTGAACTCGGCGCAGTGGCGGGACGAGTACC
GGCGGAGGTTCTCGGAGATCCTGAAGAGTTCCCGGAAAAACAGGCCAACT
CGGTCGGCCCCGGCCGCAGAGGCGCCCGCCATGCCGTCCTTGATGAAGAC
TTCCAGGACGCGAATGAAGGTGTCGAGATGCACGTCGAACGTGCGTGTCA
CCGCNACGTCCCGGATGATGTGGTCGAACTCGCCCCCCGTCATGACGAAA
GGCGAGAAGGTAGCGCCTCGCATTAGGTACAGGGCCGCTTGGTCGTCCTT
TTCCCATGTGCGGCCCTCCAGCTTTTGGGCTTCTTTCAGCCGATGGGCAT
TGTATACAGGCGCGGCCCCCGGGATGCTCGCGAGCTGTTGGTATCCCTGG
GGCGCGGCCGACTGGTGCATGGTCCCCCATGCGGGCGCACAAGGTTCGGA
GCAAGAGGATCAGGGCGGAGTGGAGCGTGTAGAATTCAGTGTACGACGAC
TGCGTCGACGACCAGCATGGGACGCGGAGTCTGGTGGTCCATCTTTCTCG
ACCAGCCGCTCTTCAGTCCATCTGGAGGAGGGGAGGGGGGACAGGGACTC
AATGCATTGGCAGTCCCCGACGGACTGGGGGCCCAACCGGGATGGAGCTG
CAGCAGCCGGTACTGGCGGCCTTAGTATGGGGGTGTTCGGCTTGAACGGG
ATGGGATTGCGCACGGGAACTGGGAGATCAGTCATGGGAGGTGNACCAGC
CGCTCTTCAGTCCATCTGGAGGAGGGGAGGGGGGACAGGGACTCAATGCA
TTGGCAGTCCCCGACGGACTGGGGGCCCAACCGGGATGGAGCTGCAGCAG
CCGGTACTGGCGGCCTTAGTATGGGGGTGTTCGGCTTGAACGGGATGGGA
TTGCGCACGGGAACTGGGAGATCAGTCATGGGAGGTGCGCCGGTATCCCC
GGCCAATGTATCAGCAGCTATAATAGCATCGCACCTCGACAGGGTGCGCG
CACGGGCGTAGGCAGGTTACCCCTAGGAGGTGAGCCAATGTCCCCGACTT
CTTTGTCTAGGGCGACGTGTGGAACAACGATTGCGCCTGTATCCCCGGCG
ACTGTGACGGCAGCCGGCATGGCCCCTCGCCCAGGTGCGAACCAACCGCG
TTCGCCGCTTGCAATGCCCAAGTTTATTCCGATAGGCACGGCCTCAGCAC
CCCAGACCATAGGCACCAGTGGAGGAGCGGGTGAGAAGAGAGCGGCGGGA
TCACCTCTACATGAGGACCTCAACTCATCCCTGGAACACGAGAGCAACAG
TCTTGGGCTGCCGACGCCAGCATGTCGTCCAGCATCTCGACGGGGGGAAG
CCAGACGATGCCACGGATGTAGGACGAAATATCCCAGGCAAGGCATTGAA
AATGCTTGCGGAAATTTGGCATGCTGCTATAGGCTGTGCCAAAAATGCTT
GGAACGATGGACGGAACAGTCTAGACGTGATGAATTTCAGTGCTGCCTAC
ATCATGTACGCCTGTGGTGCCCGTGCAAAAAGTGAGGATGCATTGTGTCA
TGTTACAAGGTCGTGTCACACCGTTCATAAAATATGTCGGTGACACAAGT
AAAGGAGATGTCGTTGAGCTCTTGCATAAAATATTATAATATCCAGAGAA
AGTCAAAGATAAGAGGCCGTTTGGCTTGCACAACGTACAGCAACCGTTCC
TCAAGTCCACCTCGGCTCTCGAGTAATGAGTCGCGTCGGCATAGAGGAAA
TAACTGAATGAGTTAAGGGGTGTGCTTCGGAAAGTGATGGGAGCATGAAG
TGTTGTTTTTATCATTTGCCGTACACCTTTTCCTGGACATTTTTTCCTGA
AGACCCATGCAGTAGTTCCAGCCCCGGAAGAAGCATGGGACATATTGGTA
ACCTGTCGGCATGATCTACGCATAGTGCCCACAGTTGGTGCCAATCCAAC
ACACAATCCCCATTCTGTCGCGTTTCCGTCACCGCCTAAAAGCCGGACAA
GGGTCAGGACAGGACCCGTCGCGGTGTTGGACCGATCGACGCAAGCGAAG
ACCCGCCATGTGCGCACGAGCGTTTTCGAGTTTCCGGCGCGGTCACCTCC
AGTCGTCACCGCCGCAACGACAGCTCTCAGTGCCACACCAACCTCGGGGA
CGGGTACGACATACTCGCTGTGCACCTCGGTCAGCCTTCACTGGGTGGCG
GGGATCAAGGCTGGTAACAGATACATGTGCTCAAGG
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protein sequence of EsuBft499_23a-0001

>EsuBft499_23 ID=EsuBft499_23|Name=EsuBft499_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=252bp
MPSLMKTSRTRMKVSRCTSNVRVTATSRMMWSNSPPVMTKGEKVAPRIRY
RAAWSSFSHVRPSSFWASFSRWALYTGAAPGMLASCWYPWGAADWCMVPH
AGAQGSEQEDQGGVERVEFSVRRLRRRPAWDAESGGPSFSTSRSSVHLEE
GRGDRDSMHWQSPTDWGPNRDGAAAAGTGGLSMGVFGLNGMGLRTGTGRS
VMGGXPAALQSIWRRGGGTGTQCIGSPRRTGGPTGMELQQPVLAALVWGC
SA
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mRNA from alignment at Scaffold_30:113939..117942-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft499_23a-0001 ID=EsuBft499_23a-0001|Name=EsuBft499_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4004bp|location=Sequence derived from alignment at Scaffold_30:113939..117942- (Ectocarpus subulatus male Bft15b)
GGCGGCGACGGTCTGTGCAAACGCGGTGGCGGCTGCCGTGCAAGCGGATG
GGACTGGGGCAACGGGGGTGCGTGCAGGTTGAAAGTAGCCTCTCGCTTGG
TGCTCGCGGACGACGGTTTGGACGGTTGTTGACGGGCTAGACCCCCCTGC
AGGAGGCCCACCATCGAAGAAGCCGTACCCTCCGCAATCAGGACCAACGT
CCTTGAGAACTGCGGGACTTGGATCGCCCCCACCGTATTGGGGGGTGGGG
GGGCGAGGGTGCTGCGCTGCCGGAGCGCCCTAGAATCGGTGGTCAGACGA
CTGACGAAATCGGCCGAATCGAGGTTGGCGTCTTGCTTGAACCTGGCGAA
GACGTCGGCCTCGCGGCCCTTGAACTCAGCGCAGTGGCGGGACGAGTACC
GGCGGAGGTCCTCGGAGATCCTGAAGAGTTCCAGGAAAAACAGGCCAACT
CGGTCGGCCCCGGCCGGAGAGGTGCCCGACGTGCCGTCCTTGATGAAAAC
TTCCAGGACGCGAATGAAGGTGTCGAGATGCNGGATCGAGGTTGGCGTCT
TGCTTGAACCTGGCGAAGACGTCGGCCTCGCGGCCCTTGAACTCGGCGCA
GTGGCGGGACGAGTACCGGCGGAGGTTCTCGGAGATCCTGAAGAGTTCCC
GGAAAAACAGGCCAACTCGGTCGGCCCCGGCCGCAGAGGCGCCCGCCATG
CCGTCCTTGATGAAGACTTCCAGGACGCGAATGAAGGTGTCGAGATGCAC
GTCGAACGTGCGTGTCACCGCNACGTCCCGGATGATGTGGTCGAACTCGC
CCCCCGTCATGACGAAAGGCGAGAAGGTAGCGCCTCGCATTAGGTACAGG
GCCGCTTGGTCGTCCTTTTCCCATGTGCGGCCCTCCAGCTTTTGGGCTTC
TTTCAGCCGATGGGCATTGTATACAGGCGCGGCCCCCGGGATGCTCGCGA
GCTGTTGGTATCCCTGGGGCGCGGCCGACTGGTGGTAGTGCTGGCTGGGG
TAGGCCTGGAGTTGTTGCTGTTGATACTGTTGTTGCAGCGGCTGCGGCTG
CGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GGATGTAGACTATAGGATCTAAAGGTCTAAATGGGTTTGCTCGCTGCCTA
AGCCATATGTGCGTCGAAGGCTTTGCACATGTCGACAATAGCAGCTCTTC
TCTACTTCTTTCGCCCTTCTGCTGCCTGTGCTTGAGCTCTTGACCAACAA
CATCTGCTCCAGACGGCTGACACCGTATGCATACATACCCGTCGCTCCGG
TGGTCTAGTGGGTAGCCTCGCAGCCTGCTAAGGGCCAGGTCATGGGTTCG
AGTCCCGACAGAGTGAGTTTTTTCTTGCTGTTTACATCCTGGTCTCCGTT
GGAAGCGGTGCGCTGCAAAGCTCGTTGTTAGTAAACTTGATCGACTTCTT
AAGTTGCGAGGGAAGGGATTGCTGTACCCTGCTCGCGATAAAAATATCTC
AGGCAGGAACCGCAGGACGGGGTCCAACCCCCCCCTCCTATGTGACCCCG
GTCGGGTCGTCTTGCTGGTAGAAGTGGAGGATAGGGGCCAGAGGGGCAAA
CGACAGAGTCCAATGATGGGAGAAAAATAAATAAATAAATATAACAAAAC
CAGAGACGATACTGCTGTCGATTTTCCTTCCTTTGTCTCGAGTATTGTAG
TCCATGCACACGTGTGTGCGTTGGCGGCACAGAATATATAGCAGCGCACC
TCCAGGGTACGTACACCGCAGGAGGCATGCATAGGCAGCTCTATATGCAG
GCCCTGTATATGGGGCAAGCGTTTCTCCTCGTTGCCCCGTTGCCCCTGTT
CTCAACGTCTGCTCTCGATATGTATCTGTGGGTGAACACTTGACAGTCTA
TCCCTCCCCCGTGAGAAGCGCTTATTCGAAGAAGTCAACACACAAAGGAG
AATGTCTGCTTTCGAGCCAGTAGTTTCAGCCCCCGTCTACCTGACGGAGG
TTTCCAAGAAGGCATGAGATGAGCCCCTAATTTTCGTCGCGTTGGGTCCT
CTCTCCACCACCATGGTCTCAAGTGAGTTCATCGACCTGATGGCACGTGC
TTGGGCTTTCTCATGTCCCCACCGTTCATTTTCCTACATTGCGTCCGTAG
GATCAATCTCAAACATCATTGGGAAACGTGGGCAGCATGGTCCCCCATGC
GGGCGCACAAGGTTCGGAGCAAGAGGATCAGGGCGGAGTGGAGCGTGTAG
AATTCAGTGTACGACGACTGCGTCGACGACCAGCATGGGACGCGGAGTCT
GGTGGTCCATCTTTCTCGACCAGCCGCTCTTCAGTCCATCTGGAGGAGGG
GAGGGGGGACAGGGACTCAATGCATTGGCAGTCCCCGACGGACTGGGGGC
CCAACCGGGATGGAGCTGCAGCAGCCGGTACTGGCGGCCTTAGTATGGGG
GTGTTCGGCTTGAACGGGATGGGATTGCGCACGGGAACTGGGAGATCAGT
CATGGGAGGTGNACCAGCCGCTCTTCAGTCCATCTGGAGGAGGGGAGGGG
GGACAGGGACTCAATGCATTGGCAGTCCCCGACGGACTGGGGGCCCAACC
GGGATGGAGCTGCAGCAGCCGGTACTGGCGGCCTTAGTATGGGGGTGTTC
GGCTTGAACGGGATGGGATTGCGCACGGGAACTGGGAGATCAGTCATGGG
AGGTGCGCCGGTATCCCCGGCCAATGTATCAGCAGCTATAATAGCATCGC
ACCTCGACAGGGTGCGCGCACGGGCGTAGGCAGGTTACCCCTAGGAGGTG
AGCCAATGTCCCCGACTTCTTTGTCTAGGGCGACGTGTGGAACAACGATT
GCGCCTGTATCCCCGGCGACTGTGACGGCAGCCGGCATGGCCCCTCGCCC
AGGTGCGAACCAACCGCGTTCGCCGCTTGCAATGCCCAAGTTTATTCCGA
TAGGCACGGCCTCAGCACCCCAGACCATAGGCACCAGTGGAGGAGCGGGT
GAGAAGAGAGCGGCGGGATCACCTCTACATGAGGACCTCAACTCATCCCT
GGAACACGAGAGCAACAGTCTTGGGCTGCCGACGCCAGCATGTCGTCCAG
CATCTCGACGGGGGGAAGCCAGACGATGCCACGGATGTAGGACGAAATAT
CCCAGGCAAGGCATTGAAAATGCTTGCGGAAATTTGGCATGCTGCTATAG
GCTGTGCCAAAAATGCTTGGAACGATGGACGGAACAGTCTAGACGTGATG
AATTTCAGTGCTGCCTACATCATGTACGCCTGTGGTGCCCGTGCAAAAAG
TGAGGATGCATTGTGTCATGTTACAAGGTCGTGTCACACCGTTCATAAAA
TATGTCGGTGACACAAGTAAAGGAGATGTCGTTGAGCTCTTGCATAAAAT
ATTATAATATCCAGAGAAAGTCAAAGATAAGAGGCCGTTTGGCTTGCACA
ACGTACAGCAACCGTTCCTCAAGTCCACCTCGGCTCTCGAGTAATGAGTC
GCGTCGGCATAGAGGAAATAACTGAATGAGTTAAGGGGTGTGCTTCGGAA
AGTGATGGGAGCATGAAGTGTTGTTTTTATCATTTGCCGTACACCTTTTC
CTGGACATTTTTTCCTGAAGACCCATGCAGTAGTTCCAGCCCCGGAAGAA
GCATGGGACATATTGGTAACCTGTCGGCATGATCTACGCATAGTGCCCAC
AGTTGGTGCCAATCCAACACACAATCCCCATTCTGTCGCGTTTCCGTCAC
CGCCTAAAAGCCGGACAAGGGTCAGGACAGGACCCGTCGCGGTGTTGGAC
CGATCGACGCAAGCGAAGACCCGCCATGTGCGCACGAGCGTTTTCGAGTT
TCCGGCGCGGTCACCTCCAGTCGTCACCGCCGCAACGACAGCTCTCAGTG
CCACACCAACCTCGGGGACGGGTACGACATACTCGCTGTGCACCTCGGTC
AGCCTTCACTGGGTGGCGGGGATCAAGGCTGGTAACAGATACATGTGCTC
AAGG
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Coding sequence (CDS) from alignment at Scaffold_30:113939..117942-

>EsuBft499_23a-0001 ID=EsuBft499_23a-0001|Name=EsuBft499_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=759bp|location=Sequence derived from alignment at Scaffold_30:113939..117942- (Ectocarpus subulatus male Bft15b)
ATGCCGTCCTTGATGAAGACTTCCAGGACGCGAATGAAGGTGTCGAGATG
CACGTCGAACGTGCGTGTCACCGCNACGTCCCGGATGATGTGGTCGAACT
CGCCCCCCGTCATGACGAAAGGCGAGAAGGTAGCGCCTCGCATTAGGTAC
AGGGCCGCTTGGTCGTCCTTTTCCCATGTGCGGCCCTCCAGCTTTTGGGC
TTCTTTCAGCCGATGGGCATTGTATACAGGCGCGGCCCCCGGGATGCTCG
CGAGCTGTTGGTATCCCTGGGGCGCGGCCGACTGGTGCATGGTCCCCCAT
GCGGGCGCACAAGGTTCGGAGCAAGAGGATCAGGGCGGAGTGGAGCGTGT
AGAATTCAGTGTACGACGACTGCGTCGACGACCAGCATGGGACGCGGAGT
CTGGTGGTCCATCTTTCTCGACCAGCCGCTCTTCAGTCCATCTGGAGGAG
GGGAGGGGGGACAGGGACTCAATGCATTGGCAGTCCCCGACGGACTGGGG
GCCCAACCGGGATGGAGCTGCAGCAGCCGGTACTGGCGGCCTTAGTATGG
GGGTGTTCGGCTTGAACGGGATGGGATTGCGCACGGGAACTGGGAGATCA
GTCATGGGAGGTGNACCAGCCGCTCTTCAGTCCATCTGGAGGAGGGGAGG
GGGGACAGGGACTCAATGCATTGGCAGTCCCCGACGGACTGGGGGCCCAA
CCGGGATGGAGCTGCAGCAGCCGGTACTGGCGGCCTTAGTATGGGGGTGT
TCGGCTTGA
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