EsuBft2522_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2522_4a-0001
Unique NameEsuBft2522_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_30contigScaffold_30:28729..29469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2522_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length63
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2522_4aEsuBft2522_4aEctocarpus subulatus male Bft15bgeneScaffold_30 28729..29469 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2522_4a-0001-exonEsuBft2522_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_30 28729..29272 +
EsuBft2522_4a-0001-exonagat-exon-32912Ectocarpus subulatus male Bft15bexonScaffold_30 29380..29469 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2522_4a-0001-cdsEsuBft2522_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_30 28729..29208 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2522_4a-0001-exonagat-three_prime_utr-10186Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_30 29209..29272 +
EsuBft2522_4a-0001-exonagat-three_prime_utr-10187Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_30 29380..29469 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2522_4a-0001EsuBft2522_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_30 28729..29208 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2522_4a-0001 ID=EsuBft2522_4a-0001|Name=EsuBft2522_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=634bp|location=Sequence derived from alignment at Scaffold_30:28729..29469+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGAGGTGCAGGAGATGATGGGCATGCTGCCATCGCTACTGCAGGC
CGAGTCGGAAGGGCAAGGCCTGGAGGGGTCGGCGGCGCTGCAAGAGGGCG
CCGCGGGTGCGGCGGAATTGGGGGTTCCGCCGAGCAGCCACCGAGAGCTG
TATTCTGCGGTGGTCGTCAGGGAGGGCGACACTGCTGGAGGAGAGAGCAG
CAGTAGGCCGGGCGTGGAAGGCGCTCTGGTGCGAGATGTGGAGGTCCCTG
CTGCAGGTGGGTTTGGTGCATTCCAAGACACCAACTCTCTTCGTAGTACG
TTCGGCAGTGCTTGCGTACAGCAGTCTGCTGCCGCTGGAGACACTGGTGA
GAGTGTCACAGCAACCGATCAATCCATTCAGGGGAGGTCGGGTGGAGAAT
GCGGCACGGCGGAAGGGTCGTGTCCACTGTTCTGCCTTGCTGTAGTAGCG
GGCGGGGCGCACAGAAGTCGCCGGAATTGATGGTGCAACAGAACGGACGG
AGGGGCCGTGAAGTCGCGCAGTTTTGGCGCGCATTCCATCTGCGGCGGTG
GAGCACCAGGACGGTAGAGAGACCGTTGGGCAGGATTGCCGGAGACACTC
AACCATGGATCGACCGCGCGACGGCGCGGGGGGG
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protein sequence of EsuBft2522_4a-0001

>EsuBft2522_4 ID=EsuBft2522_4|Name=EsuBft2522_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=159bp
MTEVQEMMGMLPSLLQAESEGQGLEGSAALQEGAAGAAELGVPPSSHREL
YSAVVVREGDTAGGESSSRPGVEGALVRDVEVPAAGGFGAFQDTNSLRST
FGSACVQQSAAAGDTGESVTATDQSIQGRSGGECGTAEGSCPLFCLAVVA
GGAHRSRRN
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mRNA from alignment at Scaffold_30:28729..29469+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2522_4a-0001 ID=EsuBft2522_4a-0001|Name=EsuBft2522_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=741bp|location=Sequence derived from alignment at Scaffold_30:28729..29469+ (Ectocarpus subulatus male Bft15b)
ATGACAGAGGTGCAGGAGATGATGGGCATGCTGCCATCGCTACTGCAGGC
CGAGTCGGAAGGGCAAGGCCTGGAGGGGTCGGCGGCGCTGCAAGAGGGCG
CCGCGGGTGCGGCGGAATTGGGGGTTCCGCCGAGCAGCCACCGAGAGCTG
TATTCTGCGGTGGTCGTCAGGGAGGGCGACACTGCTGGAGGAGAGAGCAG
CAGTAGGCCGGGCGTGGAAGGCGCTCTGGTGCGAGATGTGGAGGTCCCTG
CTGCAGGTGGGTTTGGTGCATTCCAAGACACCAACTCTCTTCGTAGTACG
TTCGGCAGTGCTTGCGTACAGCAGTCTGCTGCCGCTGGAGACACTGGTGA
GAGTGTCACAGCAACCGATCAATCCATTCAGGGGAGGTCGGGTGGAGAAT
GCGGCACGGCGGAAGGGTCGTGTCCACTGTTCTGCCTTGCTGTAGTAGCG
GGCGGGGCGCACAGAAGTCGCCGGAATTGATGGTGCAACAGAACGGACGG
AGGGGCCGTGAAGTCGCGCAGTTTTGGCGCGCATTCCATCTGCGGTAAGG
CGGTGGAGCAACATGAAAGGCGTTAGAGTAATCGGCGCAACAGAACGGAC
GGAGGGGCCGTGAAGTCGCGCAGTTTTGGCGCGCATTCCATCTGCGGTAA
GGCGGTGGAGCACCAGGACGGTAGAGAGACCGTTGGGCAGGATTGCCGGA
GACACTCAACCATGGATCGACCGCGCGACGGCGCGGGGGGG
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Coding sequence (CDS) from alignment at Scaffold_30:28729..29469+

>EsuBft2522_4a-0001 ID=EsuBft2522_4a-0001|Name=EsuBft2522_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=480bp|location=Sequence derived from alignment at Scaffold_30:28729..29469+ (Ectocarpus subulatus male Bft15b)
ATGACAGAGGTGCAGGAGATGATGGGCATGCTGCCATCGCTACTGCAGGC
CGAGTCGGAAGGGCAAGGCCTGGAGGGGTCGGCGGCGCTGCAAGAGGGCG
CCGCGGGTGCGGCGGAATTGGGGGTTCCGCCGAGCAGCCACCGAGAGCTG
TATTCTGCGGTGGTCGTCAGGGAGGGCGACACTGCTGGAGGAGAGAGCAG
CAGTAGGCCGGGCGTGGAAGGCGCTCTGGTGCGAGATGTGGAGGTCCCTG
CTGCAGGTGGGTTTGGTGCATTCCAAGACACCAACTCTCTTCGTAGTACG
TTCGGCAGTGCTTGCGTACAGCAGTCTGCTGCCGCTGGAGACACTGGTGA
GAGTGTCACAGCAACCGATCAATCCATTCAGGGGAGGTCGGGTGGAGAAT
GCGGCACGGCGGAAGGGTCGTGTCCACTGTTCTGCCTTGCTGTAGTAGCG
GGCGGGGCGCACAGAAGTCGCCGGAATTGA
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