EsuBft2522_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2522_6a-0001
Unique Name	EsuBft2522_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_30	contig	Scaffold_30:4702..5908 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7070.TC002224-PA
ProteomeId	EsuBft2522_6
Protein domains	PTHR11439
Protein domains	IPR012337
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	1207
Hectar predicted targeting category	other localisation
Evalue	2.47e-26
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38DPC@33154\|Opisthokonta,3BI7U@33208\|Metazoa,3CTS1@33213\|Bilateria,41WYJ@6656\|Arthropoda,3SH01@50557\|Insecta
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Encoded by
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0003824

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2522_6a	EsuBft2522_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_30 4702..5908 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2522_6a-0001-exon	EsuBft2522_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_30 4702..5908 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2522_6a-0001-exon	agat-five_prime_utr-6521	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_30 4702..4908 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2522_6a-0001-cds	EsuBft2522_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_30 4909..5457 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2522_6a-0001-exon	agat-three_prime_utr-10191	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_30 5458..5908 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2522_6a-0001	EsuBft2522_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_30 4909..5457 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_30:4702..5908+
coding sequence from alignment at Scaffold_30:4702..5908+

spliced messenger RNA

>EsuBft2522_6a-0001 ID=EsuBft2522_6a-0001|Name=EsuBft2522_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1207bp|location=Sequence derived from alignment at Scaffold_30:4702..5908+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GAACAGGCAAACCCGGTCAGCACCCCCGGGTATGGAGCAGAACTATCAAC
CGAGCAGCCACAAGACCGACTACTCGGACCCGAGGACAAGCAGAGATTCC
AGACCATCACCGGGAGTCTCCTGTACTTGGCCCAATGCACCCGCTACGAT
CTGTCATACGCAGTGCACCAACTGACACGGGCATGCGCAAACCCAGCACA
GGTCCACATGGCTGCGGCCAAGCACCTACTACGGTACCTACGCGGAACGC
CGGACCTGCCGATCGTGTACAAGAAGGGGCAGTTCAGACTCTCGTGCTTC
ACTGACTCGTCATTTGGAGCCAACCCAGACAACGGCAGGTCTACCACCGG
ATACCTGTTCTTCCTAGGAGGGGGACTGATCAGCTACGGAGCCAAGGCAC
AGACTCTCGCAGCACAGAACACCGTGGAGGCCGAACTTCAAGCGCTGAGC
TTCAGTGCTCGCGAGGCAGTCTACATCTCCAACTTCATGACGGAAATCGG
ATTCAAGACCTTTCGATCGGTACCCATCAACAGCGACAGCACCGGAGCAT
GTGACTGTGGCCAGCACGCGATGTTCAGCTCTAGAACCAAGCACATCGCG
CTCCAGTTCTTCTTCCTCAGGGAACTCACGAAGGGGCACCGCATCACACT
TCACCACCAACCTGGTGCCACGATCTTGGCGGACATCGCGACGAAACATC
TCCCGAAGCAGCGATTCGCCACCATCATGCAACTCATCAAGAACTACAAA
TGCTAGAATGTTATTAAGCACAAAATCGCATAGTATGGTTGATTGTTTTG
GACGCGTGTATTGCTCACAGGATGGATTCACTCACGTGGAGGTCGATATT
GTCTGATATGGATTGGGAATCGAGGGGTCCCAGAAATGGCAGCGAAGTGA
AGTTTTGGAACATCGACTACTCGCCTAATCGAGGGGTCGTGTCGAGGAAA
ACTGTTCCAACGTAGTCAGGCACAGTTTACCATAGGTGCGACTGCGGCAA
CTAGCCTTCCGTAGACATAACACAGAAAGAAGAGATGGTACTCAGCAGAG
AACATGAGCACAGAGTTGTAGCGGAGATAATTTGGCAGGCGAGACTGTAG
TTGTTTTATTGTTCCGAACCCCGAAATTCCGGTACTCGGGCCATTACTCC
GGAGACCCTCGGAACCTGCTGTGTTTTTGCTGCTTGTTTCTTGTTTTTGT
TTTGTTG

protein sequence of EsuBft2522_6a-0001

>EsuBft2522_6 ID=EsuBft2522_6|Name=EsuBft2522_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=182bp
MAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYL
FFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFK
TFRSVPINSDSTGACDCGQHAMFSSRTKHIALQFFFLRELTKGHRITLHH
QPGATILADIATKHLPKQRFATIMQLIKNYKC

mRNA from alignment at Scaffold_30:4702..5908+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2522_6a-0001 ID=EsuBft2522_6a-0001|Name=EsuBft2522_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1207bp|location=Sequence derived from alignment at Scaffold_30:4702..5908+ (Ectocarpus subulatus male Bft15b)
GAACAGGCAAACCCGGTCAGCACCCCCGGGTATGGAGCAGAACTATCAAC
CGAGCAGCCACAAGACCGACTACTCGGACCCGAGGACAAGCAGAGATTCC
AGACCATCACCGGGAGTCTCCTGTACTTGGCCCAATGCACCCGCTACGAT
CTGTCATACGCAGTGCACCAACTGACACGGGCATGCGCAAACCCAGCACA
GGTCCACATGGCTGCGGCCAAGCACCTACTACGGTACCTACGCGGAACGC
CGGACCTGCCGATCGTGTACAAGAAGGGGCAGTTCAGACTCTCGTGCTTC
ACTGACTCGTCATTTGGAGCCAACCCAGACAACGGCAGGTCTACCACCGG
ATACCTGTTCTTCCTAGGAGGGGGACTGATCAGCTACGGAGCCAAGGCAC
AGACTCTCGCAGCACAGAACACCGTGGAGGCCGAACTTCAAGCGCTGAGC
TTCAGTGCTCGCGAGGCAGTCTACATCTCCAACTTCATGACGGAAATCGG
ATTCAAGACCTTTCGATCGGTACCCATCAACAGCGACAGCACCGGAGCAT
GTGACTGTGGCCAGCACGCGATGTTCAGCTCTAGAACCAAGCACATCGCG
CTCCAGTTCTTCTTCCTCAGGGAACTCACGAAGGGGCACCGCATCACACT
TCACCACCAACCTGGTGCCACGATCTTGGCGGACATCGCGACGAAACATC
TCCCGAAGCAGCGATTCGCCACCATCATGCAACTCATCAAGAACTACAAA
TGCTAGAATGTTATTAAGCACAAAATCGCATAGTATGGTTGATTGTTTTG
GACGCGTGTATTGCTCACAGGATGGATTCACTCACGTGGAGGTCGATATT
GTCTGATATGGATTGGGAATCGAGGGGTCCCAGAAATGGCAGCGAAGTGA
AGTTTTGGAACATCGACTACTCGCCTAATCGAGGGGTCGTGTCGAGGAAA
ACTGTTCCAACGTAGTCAGGCACAGTTTACCATAGGTGCGACTGCGGCAA
CTAGCCTTCCGTAGACATAACACAGAAAGAAGAGATGGTACTCAGCAGAG
AACATGAGCACAGAGTTGTAGCGGAGATAATTTGGCAGGCGAGACTGTAG
TTGTTTTATTGTTCCGAACCCCGAAATTCCGGTACTCGGGCCATTACTCC
GGAGACCCTCGGAACCTGCTGTGTTTTTGCTGCTTGTTTCTTGTTTTTGT
TTTGTTG

Coding sequence (CDS) from alignment at Scaffold_30:4702..5908+

>EsuBft2522_6a-0001 ID=EsuBft2522_6a-0001|Name=EsuBft2522_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=549bp|location=Sequence derived from alignment at Scaffold_30:4702..5908+ (Ectocarpus subulatus male Bft15b)
ATGGCTGCGGCCAAGCACCTACTACGGTACCTACGCGGAACGCCGGACCT
GCCGATCGTGTACAAGAAGGGGCAGTTCAGACTCTCGTGCTTCACTGACT
CGTCATTTGGAGCCAACCCAGACAACGGCAGGTCTACCACCGGATACCTG
TTCTTCCTAGGAGGGGGACTGATCAGCTACGGAGCCAAGGCACAGACTCT
CGCAGCACAGAACACCGTGGAGGCCGAACTTCAAGCGCTGAGCTTCAGTG
CTCGCGAGGCAGTCTACATCTCCAACTTCATGACGGAAATCGGATTCAAG
ACCTTTCGATCGGTACCCATCAACAGCGACAGCACCGGAGCATGTGACTG
TGGCCAGCACGCGATGTTCAGCTCTAGAACCAAGCACATCGCGCTCCAGT
TCTTCTTCCTCAGGGAACTCACGAAGGGGCACCGCATCACACTTCACCAC
CAACCTGGTGCCACGATCTTGGCGGACATCGCGACGAAACATCTCCCGAA
GCAGCGATTCGCCACCATCATGCAACTCATCAAGAACTACAAATGCTAG