EsuBft930_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft930_2a-0001
Unique NameEsuBft930_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_279contigScaffold_279:586331..589178 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FJ53
ProteomeIdEsuBft930_2
Protein domainsIPR014710
Protein domainsIPR018490
Protein domainsIPR000595
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length132
Hectar predicted targeting categoryother localisation
Evalue7.34e-102
EggNOG OGsCOG2202@1|root,KOG0498@1|root,KOG0498@2759|Eukaryota,KOG0501@2759|Eukaryota
Ec32 ortholog descriptionIon transport domain
Ec32 orthologEc-10_000150.1
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K04908,ko:K21867
KEGG TC1.A.1.20.6,1.A.1.4
Descriptionphosphorelay sensor kinase activity
COG categoryT
BRITEko00000,ko02000,ko04040
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft930_2aEsuBft930_2aEctocarpus subulatus male Bft15bgeneScaffold_279 586331..589178 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft930_2a-0001EsuBft930_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_279 586331..589178 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft930_2a-0001-exonagat-exon-27289Ectocarpus subulatus male Bft15bexonScaffold_279 586331..587097 -
EsuBft930_2a-0001-exonEsuBft930_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_279 587531..587574 -
EsuBft930_2a-0001-exonagat-exon-27287Ectocarpus subulatus male Bft15bexonScaffold_279 587726..587832 -
EsuBft930_2a-0001-exonagat-exon-27288Ectocarpus subulatus male Bft15bexonScaffold_279 588304..588519 -
EsuBft930_2a-0001-exonagat-exon-27290Ectocarpus subulatus male Bft15bexonScaffold_279 588984..589178 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft930_2a-0001-cdsEsuBft930_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_279 586331..587097 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft930_2a-0001 ID=EsuBft930_2a-0001|Name=EsuBft930_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1329bp|location=Sequence derived from alignment at Scaffold_279:586331..589178- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTTTGTGACGGGTGCGAGGAGTGCCTGGAACGAGGATCACATCCT
GTCCAGACTACCCCCTCGACTCCAAGAGAGGGTCTTAGAGCACGTCCACA
GAGACGCTGTGCTCATCATCCCGATCCTCAAGACGCGACCACCGAGTTTT
GTGTCTGCGATCCTCAAGAACCTTCGGCCGAGACAGTACTCACAGGGAGA
AGTAGTCTTCCAAAGCCTACACATGAGTCAGGGGGTGTACTTCGTCACAA
AAGGGATCGCCGAGGCTTACGTCAGAGTCACGGGCGGCGCCGGGTCGGAG
GAAGAGAAGGTCAAGGGGATCGTGTCCACCGGAAAGTTCTTCGGCTACAC
CAGGTTCCTCGCGTCGTTCCTTGAGGAGGACATGGCGGTCAAGGCGTTCA
CGCAACTCTATGTATACCTGCTGTCCAACAGCAGCATCCGTTACCTCCTG
CAGTACCACCCCTTTCTCGCAGAAGAGTTGAGGATGGGTCTGGAAGAAGC
CATTTTCCAGCAAGCCAGGTTCATCGCGCCAAACCGATTCCTTTACTCTC
TCGGCCGGAAAGGCAGGAAGGCAAACCCTTGCTCGAGTGACGGCGGCGGA
GATGGCGGCGGCGGCGGCGGCATGTTCCATGAGCGCCGAACGACCGCTCT
CGCCTCCTACCTCCGTGAAGAAAGTGTTCGGGTTGAGGGAGGGACAGGAG
CAAGAACACCAATCGCCGGCCCCGACACGAGCCGAATACGACGGGCGAGT
GATAGGCCAGAGGAAGTGGGGAAAGAAGGCGACGACGATAACGGTACGAA
CGAGAAGAGGGCAGGGGACGACGCGCCGCGGAGATTGAGATACCGTCAGA
GCGGAGACGGCGGCGGTGGCGGTGGTCAAGGAGAGGTGCCCTCGGATAGC
GGGGAGGAGGACTCCCTAACGATGCCGGGGTTGGGCGGCGTTATTGTGAC
GCAGCTCACGTGGGGGGCCGGCAGCGGTGCTTGGGACGCCGCACTGAAGG
ATGCGGCGAGGGACGCGGCGGCAGAAGGGACTGGCGCAGCAACAGCAGCA
GCAGCAGCAGTAGGTGCGGTATCAACAGCAATAGAAACGGACAGAGGCAC
CACTTCTGTCGCCCTGCCAGGAAACGCAGACGTACACGGCGATGACGACC
TCGGAACGCCAGCCACGCCGCTGGTAGACGAAGACTGGGGCTCATCAGAT
GCGGAGAGGAGGGGGGGCTCGGAGCGGGGTACGGTGCAGACGTTAGACCA
GTCAGGAGAAGAAGAGGCAGAGGGACACCGTGGTGACGGTAACACGCGAA
GGTCTACCTTTACGGAGGTGCGTATGTGA
back to top

protein sequence of EsuBft930_2a-0001

>EsuBft930_2 ID=EsuBft930_2|Name=EsuBft930_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=442bp
MMFVTGARSAWNEDHILSRLPPRLQERVLEHVHRDAVLIIPILKTRPPSF
VSAILKNLRPRQYSQGEVVFQSLHMSQGVYFVTKGIAEAYVRVTGGAGSE
EEKVKGIVSTGKFFGYTRFLASFLEEDMAVKAFTQLYVYLLSNSSIRYLL
QYHPFLAEELRMGLEEAIFQQARFIAPNRFLYSLGRKGRKANPCSSDGGG
DGGGGGGMFHERRTTALASYLREESVRVEGGTGARTPIAGPDTSRIRRAS
DRPEEVGKEGDDDNGTNEKRAGDDAPRRLRYRQSGDGGGGGGQGEVPSDS
GEEDSLTMPGLGGVIVTQLTWGAGSGAWDAALKDAARDAAAEGTGAATAA
AAAVGAVSTAIETDRGTTSVALPGNADVHGDDDLGTPATPLVDEDWGSSD
AERRGGSERGTVQTLDQSGEEEAEGHRGDGNTRRSTFTEVRM
back to top

mRNA from alignment at Scaffold_279:586331..589178-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft930_2a-0001 ID=EsuBft930_2a-0001|Name=EsuBft930_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2848bp|location=Sequence derived from alignment at Scaffold_279:586331..589178- (Ectocarpus subulatus male Bft15b)
ATGATGTTTGTGACGGGTGCGAGGAGTGCCTGGAACGAGGATCACATCCT
GTCCAGACTACCCCCTCGACTCCAAGAGAGGGTCTTAGAGCACGTCCACA
GAGACGCTGTGCTCATCATCCCGATCCTCAAGACGCGACCACCGAGTTTT
GTGTCTGCGATCCTCAAGAACCTTCGGCCGAGACAGTACTCACAGGTACG
TTTCATCTGGAGATAATCCTACCCTCGGCTTCTACAGTGAACAACGAACG
CTGGATGAATGTTGTTCGTTTCGATTCTTGGTGCCTTCGCGCACCCACGG
TATGCATGTATCCTGTTACAAAGTGATGTCTACATTACCTTCTCGTCCAC
AGTGTTCCTCAACCTCGGCGCTGATGACGCCGATCGACAACTGTTTCCTC
TTCGGCGGGCGACAGGCCATGACTTCTTGATCAAACGGTCCTGAGTAGTG
GTGGCTGTTTTTTCGTGGCCATCTTTTGCGTGACAAGAAGAGACCGGAAT
CCTGTTTTTCTACCTCTCGCACGAAAAAACAAGCAGAGAAAGGCGATATC
CATCATAACTTCCCGGGTGCAGACAAGATGGCGGTGAATACACTGGAGCT
CTCCCTCGCCCACCCTCTCTTATCATGGCGGAAACTCGTATTTCTATGTC
TGTTCGCAGGGAGAAGTAGTCTTCCAAAGCCTACACATGAGTCAGGGGGT
GTACTTCGTCACAAAAGGGATCGCCGAGGCTTACGTCAGAGTCACGGGCG
GCGCCGGGTCGGAGGAAGAGAAGGTCAAGGGGATCGTGTCCACCGGAAAG
TTCTTCGGCTACACCAGGTTCCTCGCGTCGTTCCTTGAGGAGGACATGGC
GGTCAAGGCGTTCACGCAACTCTATGTAAGTATCGAAGTGTCGAAAGGAG
GAACACAACGCGCAGAAAAAGAATTGTTACACGGTGTGATCACGTGTCCA
ATACTCTGGAGTAGTCAAAAGTACGCATTGATACGAGGAGTTGATAGTCA
TTGAAACATTCTGACATAACTTTTTCTCCTATAGCTTCATTGGTTTGACG
ACAGATCGCCCATTCTTGAAGTACAGCAACTTTGTTCGGAAGTGACGAGC
GCGCATCAAAGAATAGTAACGGCATACGTTCATCCTCCGACGTGTTGGTT
TCACCTACGCAAACAAGTCAAGCCAGCGTTTTCCATTGGTCTTTGGGTTT
GGTTCTGACAGTTGTTCAGCCGCCCAGTGAATTGCTGCCCCCACCAACTA
CTTTCCACCGAAGGGAGCAAGTGTACCGTACCACCCGCGCGCGAGCTCGT
CAAGTAAGCCTGTGCTTCGACCCGCTACCTTGTACCATCTCGACAGGTAT
ACCTGCTGTCCAACAGCAGCATCCGTTACCTCCTGCAGTACCACCCCTTT
CTCGCAGAAGAGTTGAGGATGGGTCTGGAAGAAGCCATTTTCCAGCAAGC
CAGGTACTCAACACGAGGTTCAATTTTTCGAAGTTCTTTTTTGCTTCACC
AGTCGTCTTATTAGTGGTGATACATGTATCGCGGGAGACTGTTGAATCGT
GTTGTAGATGGAGTTGACCTTCCGCTCTAAGACACCTCCTTGTTACCAAA
GAAGGTTCATCGCGCCAAACCGATTCCTTTACTCTCTCGGCCGGAAAGGT
GAGAGTCTGATGTAGTGCGACTAGAGTTCGAGCGGCACACGAAACATTGA
GGTAATAATATTTCCTACGGGTTCTCCAAGGTTGGAGATAGTAACAACGC
GAGATAGATGCTCGGTGGCACGAGAACCAATGGTGGGCACCGCGTACGAA
GTATAGCATTGCGATGTACTTATCACTTTTGGCTCATTTTTTTGTCTTCT
CCTCACGCCGTTTTCTGCGCATCAAGAACTACACACAGATTGATGCTGCC
GCGACAAACTGAACACAATCCTCGATGTCCTTCACCCCAACGCCAACGCC
GTCCTCCTGTCCCCTCCCCCCTTGACTCCAACCAACTCAACCCAAAACCA
GCGAGGAAATCGCGGCGGAGAACATCAAGCTAGCCGCAAGGAAAACCATA
TACGGTAGCAAGAAAGGAGGCGACGTCGCAGGCAGGAAGGCAAACCCTTG
CTCGAGTGACGGCGGCGGAGATGGCGGCGGCGGCGGCGGCATGTTCCATG
AGCGCCGAACGACCGCTCTCGCCTCCTACCTCCGTGAAGAAAGTGTTCGG
GTTGAGGGAGGGACAGGAGCAAGAACACCAATCGCCGGCCCCGACACGAG
CCGAATACGACGGGCGAGTGATAGGCCAGAGGAAGTGGGGAAAGAAGGCG
ACGACGATAACGGTACGAACGAGAAGAGGGCAGGGGACGACGCGCCGCGG
AGATTGAGATACCGTCAGAGCGGAGACGGCGGCGGTGGCGGTGGTCAAGG
AGAGGTGCCCTCGGATAGCGGGGAGGAGGACTCCCTAACGATGCCGGGGT
TGGGCGGCGTTATTGTGACGCAGCTCACGTGGGGGGCCGGCAGCGGTGCT
TGGGACGCCGCACTGAAGGATGCGGCGAGGGACGCGGCGGCAGAAGGGAC
TGGCGCAGCAACAGCAGCAGCAGCAGCAGTAGGTGCGGTATCAACAGCAA
TAGAAACGGACAGAGGCACCACTTCTGTCGCCCTGCCAGGAAACGCAGAC
GTACACGGCGATGACGACCTCGGAACGCCAGCCACGCCGCTGGTAGACGA
AGACTGGGGCTCATCAGATGCGGAGAGGAGGGGGGGCTCGGAGCGGGGTA
CGGTGCAGACGTTAGACCAGTCAGGAGAAGAAGAGGCAGAGGGACACCGT
GGTGACGGTAACACGCGAAGGTCTACCTTTACGGAGGTGCGTATGTGA
back to top

Coding sequence (CDS) from alignment at Scaffold_279:586331..589178-

>EsuBft930_2a-0001 ID=EsuBft930_2a-0001|Name=EsuBft930_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1329bp|location=Sequence derived from alignment at Scaffold_279:586331..589178- (Ectocarpus subulatus male Bft15b)
ATGATGTTTGTGACGGGTGCGAGGAGTGCCTGGAACGAGGATCACATCCT
GTCCAGACTACCCCCTCGACTCCAAGAGAGGGTCTTAGAGCACGTCCACA
GAGACGCTGTGCTCATCATCCCGATCCTCAAGACGCGACCACCGAGTTTT
GTGTCTGCGATCCTCAAGAACCTTCGGCCGAGACAGTACTCACAGGGAGA
AGTAGTCTTCCAAAGCCTACACATGAGTCAGGGGGTGTACTTCGTCACAA
AAGGGATCGCCGAGGCTTACGTCAGAGTCACGGGCGGCGCCGGGTCGGAG
GAAGAGAAGGTCAAGGGGATCGTGTCCACCGGAAAGTTCTTCGGCTACAC
CAGGTTCCTCGCGTCGTTCCTTGAGGAGGACATGGCGGTCAAGGCGTTCA
CGCAACTCTATGTATACCTGCTGTCCAACAGCAGCATCCGTTACCTCCTG
CAGTACCACCCCTTTCTCGCAGAAGAGTTGAGGATGGGTCTGGAAGAAGC
CATTTTCCAGCAAGCCAGGTTCATCGCGCCAAACCGATTCCTTTACTCTC
TCGGCCGGAAAGGCAGGAAGGCAAACCCTTGCTCGAGTGACGGCGGCGGA
GATGGCGGCGGCGGCGGCGGCATGTTCCATGAGCGCCGAACGACCGCTCT
CGCCTCCTACCTCCGTGAAGAAAGTGTTCGGGTTGAGGGAGGGACAGGAG
CAAGAACACCAATCGCCGGCCCCGACACGAGCCGAATACGACGGGCGAGT
GATAGGCCAGAGGAAGTGGGGAAAGAAGGCGACGACGATAACGGTACGAA
CGAGAAGAGGGCAGGGGACGACGCGCCGCGGAGATTGAGATACCGTCAGA
GCGGAGACGGCGGCGGTGGCGGTGGTCAAGGAGAGGTGCCCTCGGATAGC
GGGGAGGAGGACTCCCTAACGATGCCGGGGTTGGGCGGCGTTATTGTGAC
GCAGCTCACGTGGGGGGCCGGCAGCGGTGCTTGGGACGCCGCACTGAAGG
ATGCGGCGAGGGACGCGGCGGCAGAAGGGACTGGCGCAGCAACAGCAGCA
GCAGCAGCAGTAGGTGCGGTATCAACAGCAATAGAAACGGACAGAGGCAC
CACTTCTGTCGCCCTGCCAGGAAACGCAGACGTACACGGCGATGACGACC
TCGGAACGCCAGCCACGCCGCTGGTAGACGAAGACTGGGGCTCATCAGAT
GCGGAGAGGAGGGGGGGCTCGGAGCGGGGTACGGTGCAGACGTTAGACCA
GTCAGGAGAAGAAGAGGCAGAGGGACACCGTGGTGACGGTAACACGCGAA
GGTCTACCTTTACGGAGGTGCGTATGTGA
back to top