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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 7425.NV12489-PA |
| ProteomeId | EsuBft1058_5 |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | PTHR11439 |
| Protein domains | SignalP-noTM |
| Protein domains | IPR001584 |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | IPR012337 |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | IPR001878 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 4 |
| Max annot lvl | 33208|Metazoa |
| Length | 245 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.09e-14 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,41ZUZ@6656|Arthropoda,3SKEY@50557|Insecta |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0003676 |
| GO | 0015074 |
| GO | 0008270 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1058_5a-0001 ID=EsuBft1058_5a-0001|Name=EsuBft1058_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2459bp|location=Sequence derived from alignment at Scaffold_273:331567..334473+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TGAGGGAGCGAGGGTCGGCAGCTGCGACGCCGGCGGTTTCTGCAAACCCC CATGCTCTTGTTGTGGGCCGTGGTTTCGGACACGGCGGCAACGGGGGGAG CGGGGGGGGCCGGAGGCCAGCGGCCGAATGGCAACAACGGCGACGGCCGC GGGCAACACTGGTCCTCTGGGGGCGGTGCTGTCCAACCGCAACAGCCGCA GTTGCAGGTGCAGCAGTACCGGCAGCCGCAACAGCCGCAGCGGCAGATGC AACAGCCGTACCAACAGCCGCGGCAGGAGGTGCATATGCAACAGTCGTAC CAACAGCCGCAACAGCAGATGCGACACCAACAGACGTACCAACCGCAGTC GCAGATGCAGTCGCACCGGCAGCCGCAGCAGCAGCGGCAGCAGCAACAGC CCGCTATGGACGGTGTTGGTGGCATCTACGATTGCGGTTGTAATGCCGTG TATCATCAGCCGGAATCACCACCTCCACCTGGCGCGCCGATGGGCACAGT GCACAGATGCGGCCGCTGTGGAAGGCACGGTCACCACGCCATAGATTGCG CCGCCCCCCGCAGATTCGAGGGCACGTCCGGTGCGTGCGACCAGTACGGT CACATGTGGCGCAACTGTGCCAAAAGCAACCGGCACCCCCACCTCAACGT CGTCACTTCTGCTGGTGCCCTCGGTCCGGAGTACGCGTACACCACCGCGG ATACATCGGCCGTCCAATTTCGTGATGTCCCGGCGGCCGATGGCGTATAC TACAGTGACACCATGCTGGCCGGCGCTGGTGGCGGCGGCAACGGTGGTGG TGGTGCTGGCGGTGGCGGCAGCGGCGGTGGCGATGGCGGTGGTGGCGGTG GGGTGATCGTACAGCAGCAGGTCGTGACACCGGGCGAACCCTATTTGATT TTGCCGACATTTTTCACGGCGGCGGCGGCGTGGAAGGTGAAAATGGCGGC GGCAGCGGCGGTGGTGTGGCGGCGGGAGCGGGCCCTGAGGCGCTTCGCGA CGGCGAGGGTACCTTCGGTGGCGGTCTCTTCGCGATGCACTTTGTCTGTT CCGTTACCTCATCCCCCCCCGTGCGCAAAACATCCGACGTTTCCCACATC GCCCGGGTTCGACGGTCTGCCTTGGAGACACCGGCGCCGTAGCCCACGTG GTCCCTTCTGGGGAAAACGTGTACAACAGGCGCCCGCCGCTCCCGGAGGA GCGACATCTCATGCTTGGCGACGGCAAGCACATCCCGAGGTTTTCGGTGA CTTGGATGTGATCTTCCACTGCCCTGAGGACGTGCGCGTCACCCCGCACA ATGTTGGTGTGGTACCGGGTTTGGCGCTAGATATTCTGTCGCTGAACAAG ATCCAGGGTCGCCATGAGATAAAGCTTAACCGCCATGGAGCGTCGATCTT GGGGGGGCGGGTGCGCATGACAAAATTCCCTTACGGGGATTACATCCAGG GGACTCGCGTTGATCCACTGCCTCAAGGCGATTCACCTCCTCAGCCCCCC GCGATGGTTGCGGTGATGCTACGGCCTGGCACGCAATCCAGCATCGACTA CAACGCTCTTCACTGCTCCCTCGGTCATGCCAATTCCAAGACGCTGTACG AGACCGCCAGGCAGATGGGTATCAAGGTGACCGGCACTCCGGAGTACTGC GATGGATGTGCGGAGTCGAAGGCGATTCAGCGCTCGGTCCCCAAGGTCAT CTCCCCCTCCCGCCGGACGACGCGGCCTCTTGAGCGTGTCGCGATGGACC TAGCCGGTCCGTTCGGCCAATCCAGCGGCGGTGCCAAGTACTACGTGATG CAGATCCTGGACCACCATACCAACTACGGATGGATTTGCTTTCTGCGGGA GAAGAGCAGTACAAACGTGGTTGCGGCCTTTCGTGCGTGGTATGCCTCCA TCAAATCGCTCGTGGCTACTCACGGGGGGCTGGGCTGCGTTCTGATCGAC AACGGCACCGAGTGGGTCAACGCGGAGTTTCGGGGGCTGCTGGCGGAGCT GAACATTACGCGGGAGCTCACGGCGGTCGACGGGCCCAAGAGCAACGGTC GTGTGGAGCGGAGGATTGCACTAGTGATGGAGGGGGGCAAGGCTGCGTTT CTGGAGTTCCCGAAGCTTTTCCCCGGAGTTATGTTCCCGACCAAGGCGCT GTCCTTCCGGGCCATCTGGCCCGAGGCCTTCGCGTGGATGAACGACTCTC TGAACATCGCAGCGGAGGTGAGCAAGGAAGACAAGCGGTGCCCGGAAGTT AAGCTGTACGGCAGGAGGAGGATCCGAGTGCTTCTGCCGTTCATGATGCC CGGCTTCCGTCACCGTCACCGCCCGTCCACGATGCACAGCAAGGGGGAGC GGTGCTTCTATCTTAACTCAGGCCAGGATCATTCGTCGACGACGTACAAG ATCAGCACGCCGACTGGGGTGCCCACCTACTCCTAACACTGCACCTTCGG CTTCAGCAG back to topprotein sequence of EsuBft1058_5a-0001 >EsuBft1058_5 ID=EsuBft1058_5|Name=EsuBft1058_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=794bp
MLLLWAVVSDTAATGGAGGAGGQRPNGNNGDGRGQHWSSGGGAVQPQQPQ LQVQQYRQPQQPQRQMQQPYQQPRQEVHMQQSYQQPQQQMRHQQTYQPQS QMQSHRQPQQQRQQQQPAMDGVGGIYDCGCNAVYHQPESPPPPGAPMGTV HRCGRCGRHGHHAIDCAAPRRFEGTSGACDQYGHMWRNCAKSNRHPHLNV VTSAGALGPEYAYTTADTSAVQFRDVPAADGVYYSDTMLAGAGGGGNGGG GAGGGGSGGGDGGGGGGVIVQQQVVTPGEPYLILPTFFTAAAAWKVKMAA AAAVVWRRERALRRFATARVPSVAVSSRCTLSVPLPHPPPCAKHPTFPTS PGFDGLPWRHRRRSPRGPFWGKRVQQAPAAPGGATSHAWRRQAHPEVFGD LDVIFHCPEDVRVTPHNVGVVPGLALDILSLNKIQGRHEIKLNRHGASIL GGRVRMTKFPYGDYIQGTRVDPLPQGDSPPQPPAMVAVMLRPGTQSSIDY NALHCSLGHANSKTLYETARQMGIKVTGTPEYCDGCAESKAIQRSVPKVI SPSRRTTRPLERVAMDLAGPFGQSSGGAKYYVMQILDHHTNYGWICFLRE KSSTNVVAAFRAWYASIKSLVATHGGLGCVLIDNGTEWVNAEFRGLLAEL NITRELTAVDGPKSNGRVERRIALVMEGGKAAFLEFPKLFPGVMFPTKAL SFRAIWPEAFAWMNDSLNIAAEVSKEDKRCPEVKLYGRRRIRVLLPFMMP GFRHRHRPSTMHSKGERCFYLNSGQDHSSTTYKISTPTGVPTYS back to topmRNA from alignment at Scaffold_273:331567..334473+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1058_5a-0001 ID=EsuBft1058_5a-0001|Name=EsuBft1058_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2907bp|location=Sequence derived from alignment at Scaffold_273:331567..334473+ (Ectocarpus subulatus male Bft15b) TGAGGGAGCGAGGGTCGGCAGCTGCGACGCCGGCGGTTTCTGCAAACCCC
CATGCTCTTGTTGTGGGCCGTGGTTTCGGACACGGCGGCAACGGGGGGAG
CGGGGGGGGCCGGAGGCCAGCGGCCGAATGGCAACAACGGCGACGGCCGC
GGGCAACACTGGTCCTCTGGGGGCGGTGCTGTCCAACCGCAACAGCCGCA
GTTGCAGGTGCAGCAGTACCGGCAGCCGCAACAGCCGCAGCGGCAGATGC
AACAGCCGTACCAACAGCCGCGGCAGGAGGTGCATATGCAACAGTCGTAC
CAACAGCCGCAACAGCAGATGCGACACCAACAGACGTACCAACCGCAGTC
GCAGATGCAGTCGCACCGGCAGCCGCAGCAGCAGCGGCAGCAGCAACAGC
CCGCTATGGACGGTGTTGGTGGCATCTACGATTGCGGTTGTAATGCCGTG
TATCATCAGCCGGAATCACCACCTCCACCTGGCGCGCCGATGGGCACAGT
GCACAGATGCGGCCGCTGTGGAAGGCACGGTCACCACGCCATAGATTGCG
CCGCCCCCCGCAGATTCGAGGGCACGTCCGGTGCGTGCGACCAGTACGGT
CACATGTGGCGCAACTGTGCCAAAAGCAACCGGCACCCCCACCTCAACGT
CGTCACTTCTGCTGGTGCCCTCGGTCCGGAGTACGCGTACACCACCGCGG
ATACATCGGCCGTCCAATTTCGTGATGTCCCGGCGGCCGATGGCGTATAC
TACAGTGACACCATGCTGGCCGGCGCTGGTGGCGGCGGCAACGGTGGTGG
TGGTGCTGGCGGTGGCGGCAGCGGCGGTGGCGATGGCGGTGGTGGCGGTG
GGGTGATCGTACAGCAGCAGGTCGTGACACCGGGCGAACCCTATTTGATT
TTGCCGACATTTTTCACGGCGGCGGCGGCGTGGAAGGTGAAAATGGCGGC
GGCAGCGGCGGTGGTGTGGCGGCGGGAGCGGGCCCTGAGGCGCTTCGCGA
CGGCGAGGGTACCTTCGGTGGCGGTCTCTTCGCGATGCACTTTGTCTGTT
CCGTTACCTCATCCCCCCCCGTGCGCAAAACATCCGACGTTTCCCACATC
GCCCGGGTTCGACGGTCTGCCTTGGAGACACCGGCGCCGTAGCCCACGTG
GTCCCTTCTGGGGAAAACGTGTACAACAGGCGCCCGCCGCTCCCGGAGGA
GCGACATCTCATGCTTGGCGACGGCAAGCACATCCCGGTAGAGGTTTTCG
GTGACGCTTGGCGACGGCAAGCACATCCCGGTAGAGGTTTTCGGTGACTT
GGATGTGATCTTCCACTGCCCTGAGGACGTGCGCGTCACCCCGCACAATG
TTGGTGTGGTACCGGGTTTGGCGCTAGATATTCTGTCGCTGAACAAGATC
CAGGGTCGCCATGAGATAAAGCTTAACCGCCATGGAGCGTCGATCTTGGG
GGGGCGGGTGCGCATGACAAAATTCCCTTACGGGGATTACATCCAGGGGA
CTCGCGTTGATCCACTGCCTCAAGGCGATTCACCTCCTCAGCCCCCCGCG
ATGGTTGCGGTGATGCTACGGCCTGGCACGCAATCCAGCATCGACTACAA
CGCTCTTCACTGCTCCCTCGGTCATGCCAATTCCAAGACGCTGTACGAGA
CCGCCAGGCAGATGGGTATCAAGGTGACCGGCACTCCGGAGTACTGCGAT
GGATGTGCGGAGTCGAAGGCGATTCAGCGCTCGGTCCCCAAGGTCATCTC
CCCCTCCCGCCGGACGACGCGGCCTCTTGAGCGTGTCGCGATGGACCTAG
CCGGTCCGTTCGGCCAATCCAGCGGCGGTGCCAAGTACGTGATGCAGATC
CTGGACCACCATACCAACTACGGATGGATTTGCTTTCTGCGGGAGAAGAG
CNTCAAGGTGACCGGCACTCCGGAGTACTGCGATGGATGTGCGGAGTCGA
AGGCGATCCAGCGCTCGGTCCCCAAGATCATCTCCCCCTCTCGCCGGACG
ACGCGGCCGACCTCTTGAACGTGTCGCCATGGACCTAGCCGACCCCTTCG
GCCAATCCAGCGGCGGTGCCAAGTACGTGATGCAGATCCTGGACCACCAT
ACCAACTACGGATGGATTTGCTTTCTGCGGGAGAAGAGCAGTACAAACGT
GGTTGCGGCCTTTCGTGCGTGGTATGCCTCCATCAAATCGCTCGTGGCTA
CTCACGGGGGGCTGGGCTGCGTTCTGATCGACAACGGCACCGAGTGGGTC
AACGCGGAGTTTCGGGGGCTGCTGGCGGAGCTGAACATTACGCGGGAGCT
CACGGCGGTCGACGGGCCCAAGAGCAACGGTCGTGTGGAGCGGAGGATTG
CACTAGTGATGGAGGGGGGCAAGGCTGCGTTTCTGGAGTTCCCGAAGCTT
TTCCCCGGAGTTATGTTCCCGACCAAGGCGCTGTCCTTCCGGGCCATCTG
GCCCGAGGCCTTCGCGTGGATGAACGACTCTCTGAACATCGCAGCGGAGG
TGAGCAAGGAAGACAAGCGGTGCCCGGAAGTTAAGCTGTANGGCGTTTCT
GGAATTCCCGAAGCTTTCCCCCGGAGTTACGTTCCCGACAAAGGTGCTGT
CCTTCCGGACCATCTGGCCCGATGCCTTCGCGTGGATGAACGACTCTCTG
AACATCGCAGCGGAGGTGAGCAAGGAAGACAAGCGGTGCCCGGAAGTTAA
GCTGTACGGCAGGAGGAGGATCCGAGTGCTTCTGCCGTTCATGATGCCCG
GCTTCCGTCACCGTCACCGCCCGTCCACGATGCACAGCAAGGGGGAGCGG
TGCTTCTATCTTAACTCAGGCCAGGATCATTCGTCGACGACGTACAAGAT
CAGCACGCCGACTGGGGTGCCCACCTACTCCTAACACTGCACCTTCGGCT
TCAGCAG back to topCoding sequence (CDS) from alignment at Scaffold_273:331567..334473+ >EsuBft1058_5a-0001 ID=EsuBft1058_5a-0001|Name=EsuBft1058_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2385bp|location=Sequence derived from alignment at Scaffold_273:331567..334473+ (Ectocarpus subulatus male Bft15b) ATGCTCTTGTTGTGGGCCGTGGTTTCGGACACGGCGGCAACGGGGGGAGC GGGGGGGGCCGGAGGCCAGCGGCCGAATGGCAACAACGGCGACGGCCGCG GGCAACACTGGTCCTCTGGGGGCGGTGCTGTCCAACCGCAACAGCCGCAG TTGCAGGTGCAGCAGTACCGGCAGCCGCAACAGCCGCAGCGGCAGATGCA ACAGCCGTACCAACAGCCGCGGCAGGAGGTGCATATGCAACAGTCGTACC AACAGCCGCAACAGCAGATGCGACACCAACAGACGTACCAACCGCAGTCG CAGATGCAGTCGCACCGGCAGCCGCAGCAGCAGCGGCAGCAGCAACAGCC CGCTATGGACGGTGTTGGTGGCATCTACGATTGCGGTTGTAATGCCGTGT ATCATCAGCCGGAATCACCACCTCCACCTGGCGCGCCGATGGGCACAGTG CACAGATGCGGCCGCTGTGGAAGGCACGGTCACCACGCCATAGATTGCGC CGCCCCCCGCAGATTCGAGGGCACGTCCGGTGCGTGCGACCAGTACGGTC ACATGTGGCGCAACTGTGCCAAAAGCAACCGGCACCCCCACCTCAACGTC GTCACTTCTGCTGGTGCCCTCGGTCCGGAGTACGCGTACACCACCGCGGA TACATCGGCCGTCCAATTTCGTGATGTCCCGGCGGCCGATGGCGTATACT ACAGTGACACCATGCTGGCCGGCGCTGGTGGCGGCGGCAACGGTGGTGGT GGTGCTGGCGGTGGCGGCAGCGGCGGTGGCGATGGCGGTGGTGGCGGTGG GGTGATCGTACAGCAGCAGGTCGTGACACCGGGCGAACCCTATTTGATTT TGCCGACATTTTTCACGGCGGCGGCGGCGTGGAAGGTGAAAATGGCGGCG GCAGCGGCGGTGGTGTGGCGGCGGGAGCGGGCCCTGAGGCGCTTCGCGAC GGCGAGGGTACCTTCGGTGGCGGTCTCTTCGCGATGCACTTTGTCTGTTC CGTTACCTCATCCCCCCCCGTGCGCAAAACATCCGACGTTTCCCACATCG CCCGGGTTCGACGGTCTGCCTTGGAGACACCGGCGCCGTAGCCCACGTGG TCCCTTCTGGGGAAAACGTGTACAACAGGCGCCCGCCGCTCCCGGAGGAG CGACATCTCATGCTTGGCGACGGCAAGCACATCCCGAGGTTTTCGGTGAC TTGGATGTGATCTTCCACTGCCCTGAGGACGTGCGCGTCACCCCGCACAA TGTTGGTGTGGTACCGGGTTTGGCGCTAGATATTCTGTCGCTGAACAAGA TCCAGGGTCGCCATGAGATAAAGCTTAACCGCCATGGAGCGTCGATCTTG GGGGGGCGGGTGCGCATGACAAAATTCCCTTACGGGGATTACATCCAGGG GACTCGCGTTGATCCACTGCCTCAAGGCGATTCACCTCCTCAGCCCCCCG CGATGGTTGCGGTGATGCTACGGCCTGGCACGCAATCCAGCATCGACTAC AACGCTCTTCACTGCTCCCTCGGTCATGCCAATTCCAAGACGCTGTACGA GACCGCCAGGCAGATGGGTATCAAGGTGACCGGCACTCCGGAGTACTGCG ATGGATGTGCGGAGTCGAAGGCGATTCAGCGCTCGGTCCCCAAGGTCATC TCCCCCTCCCGCCGGACGACGCGGCCTCTTGAGCGTGTCGCGATGGACCT AGCCGGTCCGTTCGGCCAATCCAGCGGCGGTGCCAAGTACTACGTGATGC AGATCCTGGACCACCATACCAACTACGGATGGATTTGCTTTCTGCGGGAG AAGAGCAGTACAAACGTGGTTGCGGCCTTTCGTGCGTGGTATGCCTCCAT CAAATCGCTCGTGGCTACTCACGGGGGGCTGGGCTGCGTTCTGATCGACA ACGGCACCGAGTGGGTCAACGCGGAGTTTCGGGGGCTGCTGGCGGAGCTG AACATTACGCGGGAGCTCACGGCGGTCGACGGGCCCAAGAGCAACGGTCG TGTGGAGCGGAGGATTGCACTAGTGATGGAGGGGGGCAAGGCTGCGTTTC TGGAGTTCCCGAAGCTTTTCCCCGGAGTTATGTTCCCGACCAAGGCGCTG TCCTTCCGGGCCATCTGGCCCGAGGCCTTCGCGTGGATGAACGACTCTCT GAACATCGCAGCGGAGGTGAGCAAGGAAGACAAGCGGTGCCCGGAAGTTA AGCTGTACGGCAGGAGGAGGATCCGAGTGCTTCTGCCGTTCATGATGCCC GGCTTCCGTCACCGTCACCGCCCGTCCACGATGCACAGCAAGGGGGAGCG GTGCTTCTATCTTAACTCAGGCCAGGATCATTCGTCGACGACGTACAAGA TCAGCACGCCGACTGGGGTGCCCACCTACTCCTAA back to top
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