EsuBft2346_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2346_2a-0001
Unique NameEsuBft2346_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_270contigScaffold_270:702..2267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2346_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length90
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2346_2aEsuBft2346_2aEctocarpus subulatus male Bft15bgeneScaffold_270 702..2267 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2346_2a-0001-exonagat-exon-10666Ectocarpus subulatus male Bft15bexonScaffold_270 702..1532 -
EsuBft2346_2a-0001-exonEsuBft2346_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_270 2195..2267 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2346_2a-0001-exonagat-three_prime_utr-9426Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_270 702..1341 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2346_2a-0001-cdsEsuBft2346_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_270 1342..1532 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2346_2a-0001EsuBft2346_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_270 1342..2267 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2346_2a-0001 ID=EsuBft2346_2a-0001|Name=EsuBft2346_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=904bp|location=Sequence derived from alignment at Scaffold_270:702..2267- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAAGGCCAGCTTCCACAAGCTTGTCGAGCTACTCCGCCCTTCGCT
GGCAGTCAACGCCTTCTTCGGCGCACTGCGATCGCCAATCAACGGCGCCA
TAGCTGTAGAAGTCCGCGTTGCCGTGGCGTTGAGGATCCTGGCTGGCGCT
AGTTACTGGGATGTTGCCCTCATGTTTGGCTTGTCGGTGCCGACCACGTA
CCAAATCTTGTGGTCGATGATCGACGCCATCAACAAGACGCCTGCGGTTG
GAGCATTCGACTNGGGTTATTATTGGCGGCATTCTCTTGACCAGCCGCGG
GATGTCGTTTTTTTTTTTGTTACGTCTGGCGTTTCCAGCCGTTTTAGTGT
ATGGAGGCCTATACACAGCCTTCGACGTTAACGCAGGAAAAACATGTAGT
CCCCGGCGGATACAAGTTCGGATTGTCATCGTGGTCAGCATGCCTTCAAT
CGAACCCCCGGGTCCCGGGTGGTTCGCCAGCTGTTGGGCTTTGTACAAAT
GGCCTTTTTACAAATGAATGTTTTTTTTTGTGTCATCATTAGTGTATGCT
GGCCGCGTTGGTTCCGCCCCGCAACAGTGGCCCGGCAACTGCTTTTAGTC
AACCACGTGGCTCTGAGATACCCTGCTACATTTTTACCGCTGAACCTGGC
GCAATATTAGCATTAGCAAACACGGTATGTGCACCGTTGCTGGTGATGGC
GCCGTCGCACACGACATCAACCCACACAACGTACAGCCGAACGCAATTTA
CCGAAGTTCGTCAACGTCCATCTCTCGACTAATTTTTTTCCCCTTCCCGG
CACTGCTACTTTCCCGCTCTCGTGTCTGCCGTCTACAAATGCAGGAGAAG
AGCACCGATGGCATTTTCTCCTGGGTCGTCGCCGCCGTGGATGGTCTGTT
CATC
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protein sequence of EsuBft2346_2a-0001

>EsuBft2346_2 ID=EsuBft2346_2|Name=EsuBft2346_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=88bp
MEKASFHKLVELLRPSLAVNAFFGALRSPINGAIAVEVRVAVALRILAGA
SYWDVALMFGLSVPTTYQILWSMIDAINKTPAVGAFDX
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mRNA from alignment at Scaffold_270:702..2267-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2346_2a-0001 ID=EsuBft2346_2a-0001|Name=EsuBft2346_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1566bp|location=Sequence derived from alignment at Scaffold_270:702..2267- (Ectocarpus subulatus male Bft15b)
ATGGAGAAGGCCAGCTTCCACAAGCTTGTCGAGCTACTCCGCCCTTCGCT
GGCAGTCAACGCCTTCTTCGGCGGTGAGTGTTGATGTGTGAATGCAGCCG
CCCACGGCAGGTATGCGTAAGGCTTCCTCTCATATATACGTAGAGAACAA
TGGGGAAGAGCAAGTCTAAAACCCAGGAGAAACACTACTGCTGTAGACTG
CCTTGCTGTTTGTCTGCTATCTATATAAAAAAAAACTCTCTCATCGAAAC
ATGCAGCCAGGGTATGCATACACGCAGCAGCACTTATTCTACAGCAGTAG
GTACAGCAGTGTCTGCATATGCATACAGCAGCAGTCGTTGTATGGGAACG
ACAGGAAGGTACTATGGTGGCGCTGAAATAAGTTCAGCAGTATGAATAGA
GCGTGCAACACACGCCGGCACCACTATACATTATACATGCCTCGTCGGGA
GCCTACACAGGTTGTCGTATCCCGCAATGATAGCATACAAGAGTCGACAC
GTGCTCCTCATATGCATATGCAAGGTTAGTTGTGTGTTCCGTGAAGAACA
CAGAGCCGTTTCACAACCCTAGTCGGGAGGTGTATTGGGCCGGTACTCTG
GCAAGTTTAACGATGACATGCGTCCTTTGACGCTGGAGATTGCAAACACA
CCACCTATGACACTAGTACATATTTCCTGACCGACACACGCTCATCCTTC
GAACATGACCTGCGCGTCGCTCCGAAACCCCACAGCACTGCGATCGCCAA
TCAACGGCGCCATAGCTGTAGAAGTCCGCGTTGCCGTGGCGTTGAGGATC
CTGGCTGGCGCTAGTTACTGGGATGTTGCCCTCATGTTTGGCTTGTCGGT
GCCGACCACGTACCAAATCTTGTGGTCGATGATCGACGCCATCAACAAGA
CGCCTGCGGTTGGAGCATTCGACTNGGGTTATTATTGGCGGCATTCTCTT
GACCAGCCGCGGGATGTCGTTTTTTTTTTTGTTACGTCTGGCGTTTCCAG
CCGTTTTAGTGTATGGAGGCCTATACACAGCCTTCGACGTTAACGCAGGA
AAAACATGTAGTCCCCGGCGGATACAAGTTCGGATTGTCATCGTGGTCAG
CATGCCTTCAATCGAACCCCCGGGTCCCGGGTGGTTCGCCAGCTGTTGGG
CTTTGTACAAATGGCCTTTTTACAAATGAATGTTTTTTTTTGTGTCATCA
TTAGTGTATGCTGGCCGCGTTGGTTCCGCCCCGCAACAGTGGCCCGGCAA
CTGCTTTTAGTCAACCACGTGGCTCTGAGATACCCTGCTACATTTTTACC
GCTGAACCTGGCGCAATATTAGCATTAGCAAACACGGTATGTGCACCGTT
GCTGGTGATGGCGCCGTCGCACACGACATCAACCCACACAACGTACAGCC
GAACGCAATTTACCGAAGTTCGTCAACGTCCATCTCTCGACTAATTTTTT
TCCCCTTCCCGGCACTGCTACTTTCCCGCTCTCGTGTCTGCCGTCTACAA
ATGCAGGAGAAGAGCACCGATGGCATTTTCTCCTGGGTCGTCGCCGCCGT
GGATGGTCTGTTCATC
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Coding sequence (CDS) from alignment at Scaffold_270:702..2267-

>EsuBft2346_2a-0001 ID=EsuBft2346_2a-0001|Name=EsuBft2346_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=264bp|location=Sequence derived from alignment at Scaffold_270:702..2267- (Ectocarpus subulatus male Bft15b)
ATGGAGAAGGCCAGCTTCCACAAGCTTGTCGAGCTACTCCGCCCTTCGCT
GGCAGTCAACGCCTTCTTCGGCGCACTGCGATCGCCAATCAACGGCGCCA
TAGCTGTAGAAGTCCGCGTTGCCGTGGCGTTGAGGATCCTGGCTGGCGCT
AGTTACTGGGATGTTGCCCTCATGTTTGGCTTGTCGGTGCCGACCACGTA
CCAAATCTTGTGGTCGATGATCGACGCCATCAACAAGACGCCTGCGGTTG
GAGCATTCGACTNG
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