Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LHK0 |
| ProteomeId | EsuBft1050_7 |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SignalP-TM |
| Protein domains | SignalP-noTM |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | G3DSA |
| Protein domains | SSF55620 |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | IPR007115 |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 109 |
| Hectar predicted targeting category | signal peptide |
| Evalue | 7.66e-116 |
| EggNOG OGs | 2CYMG@1|root,2S557@2759|Eukaryota |
| Ec32 ortholog description | 6-pyruvoyl tetrahydropterin synthase/QueD family protein |
| Ec32 ortholog | Ec-10_002190.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | 6-pyruvoyl tetrahydropterin synthase |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1050_7a-0001 ID=EsuBft1050_7a-0001|Name=EsuBft1050_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1092bp|location=Sequence derived from alignment at Scaffold_265:117264..119900- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GAGAGAGAGAGAGAGAGAGAGATCGACAGAGGTAGTGACGATGATGAGGC
TGTTGGCGATTGTGTGGGTGTGTTTGATGGCGGTGCTCACGTCTGCCCAC
AACCCGACGGCGGGAGGCGGAGGCGGCCACCAGGGATACTCCCTGGGCAT
CCGAGACTCGATCATGATCGCTCACAGCTTTGAGGGATCGCAGTTCGGGC
CTGCCCAAGAGATGCATGGGGCGACGTACACGGTCGATGCCGAGTTCAAG
ACGGAGGCCCTCGTGGAAAAGTCCAACTGGGTCGTGGACATAGGCGCCGC
CTCGGAGATGCTCGCTGCGGTGCTGTCCAAGTACAACTTCAAGAACCTCA
ACGAGATCTTCCCCGGACAAAACACAACCACCGAGTTCATGTGCAAGGTG
ATATTCGACGAGCTCGCAGCTAAGTGCGGCAAGGACTTCCACGGCACTCT
TTGCATCAAGCTGTGGGAGAGCCACAAGGCATGGGGGTGCTACGAGGGGG
ACATTGGCGAAGAGGTGGACGAGGCATGATGATGGCAGCCCACGCGTCGT
CGTTGGATAGCAACCCTGAGGGCCGGAGGGAGAGGAAGGATGCAGTACAG
TACACGTGGGGCGACGCTCTTTGTAGGTAGCACAACATTTTTTTGGTTGC
ACCCCTTCGGCCAGACGGTTCCAAGCCAGATGTTTCAGCCCTGTCGTAGG
GTCCTTTGTTCACACGTGGTGTGGAGAGCAACACGTAGATTCGGGAGGGA
TTGGAGCACCCTGCCGCTGTTGATTATTTCGAGACGCCCCTGTTTCCGGG
TCGCGTACCACGTGAAGATGTTCCTGGGTTTGCGACAACACCCTGCGCGT
TTATTTTTGACGGTGTAGCAGCGTCTCCACGTCGCTTCTTGTTCGACGCA
CCTGTGGGTGGTAAACTGGTAGGCCCGATGGGTGCCGGTGCTGTGCGAAT
TCCGAGCTTGCAGGCCACAGAGGCCCGGGTTGGGTGAATGTTTGGCCGTG
CTTAGTCCATGGGGGCTCCGTGATATGTATATCTCGAGGTACATGGGTGC
TGCCGCGTACTCCCTTCAACCATGAAAAAAAGTATCTGCCCT back to topprotein sequence of EsuBft1050_7a-0001 >EsuBft1050_7 ID=EsuBft1050_7|Name=EsuBft1050_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=162bp
MMRLLAIVWVCLMAVLTSAHNPTAGGGGGHQGYSLGIRDSIMIAHSFEGS
QFGPAQEMHGATYTVDAEFKTEALVEKSNWVVDIGAASEMLAAVLSKYNF
KNLNEIFPGQNTTTEFMCKVIFDELAAKCGKDFHGTLCIKLWESHKAWGC
YEGDIGEEVDEA back to topmRNA from alignment at Scaffold_265:117264..119900- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1050_7a-0001 ID=EsuBft1050_7a-0001|Name=EsuBft1050_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2637bp|location=Sequence derived from alignment at Scaffold_265:117264..119900- (Ectocarpus subulatus male Bft15b)
GAGAGAGAGAGAGAGAGAGAGATCGACAGAGGTAGTGACGATGATGAGGC
TGTTGGCGATTGTGTGGGTGTGTTTGATGGCGGTGCTCACGTCTGCCCAC
AACCCGACGGCGGGAGGCGGAGGCGGCCACCAGGGATACTCCCTGGGCAT
CCGAGACTCGATCATGATCGCTCACAGCTTTGAGGGATCGCAGTTCGGGC
CTGCCCAAGAGGTGCGTTTGTTCCCCCAAAGCGCAGACTGTTTAGCTGAC
TTAACGCCACCCAAGAGCAATTGGGGGCTGGGCTGCTGTAGTCTATGTAC
TGGCACGCGGGTGCGGCCTCCAACAGGAGACGATGAGGCTTGGGCCGCTA
ATGTACATGGTAATAGGTGATTGCCCACCTGTCCTGTCATCCCCGGTCTG
TTATCCTTCGCATGTCAAAGGAACCAACCTCTTGTTGCAGAGGCGGATCG
CAATCTCTCTCTCGTTTTGTTTCTCTCGACATTGCCCGATGCTGTATGAT
CTACCGACTGAGCCAAACACACTCAGGGGTCCCCTGGCAGTGCGAAATCC
TTGTCAGCTACGGCTGCCTGCAGGCTACCGCTGTGTGCCACGTTTTACGT
TTTGAAACTTGTCACCATGAGAGAGGACATGACTGGCGGCATCGTGTGCA
TCTCGCAAACCTCGGGACTCCCGTTCAGATGCATGGGGCGACGTACACGG
TCGATGCCGAGTTCAAGACGGAGGCCCTCGTGGAAAAGTCCAACTGGGTC
GTGGACATAGGCGCCGCCTCGGAGATGCTCGCTGCGGTGCTGTCCAAGTA
CAACTTCAAGAACCTCAACGAGATCTTCCCCGGACAAAACACAACCACCG
AGTTCATGTGCAAGGTACTGAAGGGTGGCAATCGAAAGTCGTGCTGCTGC
GTCGGTTTTTCTCTCCCCAGATATCATGTTGTGGTGGTACTTTCGACAGC
AGTGTGGTGGACGCACCGGCGTACGCGCTTTTCACGTTTGCAGCACTCTT
GACGCTGAAGTGTGGTGAGTGCCGGGGCGGAATGACATTTCCGAGACTCA
TCCTTTCATCCAATTAGAGCGATAACTCCGAATCCGTGGTGTGCATACGC
CCGCCCACGTTCTCCCGAAACGCATGCCGAAACAGGTGATCGACAAGTAA
CCATATCCCTCGCCAACGGGTTGGGGTGGTGGTAAAGACAACATTCGTTC
ATAGTTTGCGAGGCTAGCGTCGATCGCTGTACCTGGCTGAGTGTTTGCTT
TTCTGCCGAGTTGTACTACCGAAACGCCGCTTAGGTTGGCAACCGTTTTT
CCGTTGATTCGTCGGTGAACCGCGGTGGAGCCTAGAGATCAAACGTCGGT
GCGGGTAGCTGCTGCTTTTGGTAGCGGTTGTGCGTGCTCACACTAGTTCT
GGCCGGGTCGTTCGCCAGCCATTTTTCTCGACTGGTTGAAGTCTACATAA
ACTGACCAAGAAGATGACTGAGGGAGACAAGGAGCAACAGCGGTCATTGC
TGATGTTCACCGTATTGTGTGGCCATCGGCACGCTGCAGCCGCACTCATC
GACACTGAAAACAGGCTTGGATGCCCATTTTGTGATTCCTGCACGGAGAA
CCCCAGAGAGACGCAAGACGTTGAACGTTTGATTCCAACCTGTTTTTTCT
TGCACTACTCTCGAGTCCATGCTACCATGAAACCCATGCCAAGCAATGCC
TTTGCCTGCTTGCTTCTACCTCTTTTCTCTATCAAACATTTTGCCGGACG
GAGTTGGTAACGAAATAAGCCGTCTCCTGGGTGGAGTGAAGCACTGCTCA
GATCGAACTTTTTGGCAGGGCTCGTGTTGGATTCAGCACCATGCGGGTAC
ATGCCGACGCCTTACTTCCACCGAGAACGAAAAGAGGCTCGCCGACCGTG
CTGACTGCTGTTGTTGGTTGGCGCTATGCTTGTTTTTGGCAGGTGATATT
CGACGAGCTCGCAGCTAAGTGCGGCAAGGACTTCCACGGCACTCTTTGCA
TCAAGCTGTGGGAGAGCCACAAGGCATGGGGGTGCTACGAGGGGGACATT
GGCGAAGAGGTGGACGAGGCATGATGATGGCAGCCCACGCGTCGTCGTTG
GATAGCAACCCTGAGGGCCGGAGGGAGAGGAAGGATGCAGTACAGTACAC
GTGGGGCGACGCTCTTTGTAGGTAGCACAACATTTTTTTGGTTGCACCCC
TTCGGCCAGACGGTTCCAAGCCAGATGTTTCAGCCCTGTCGTAGGGTCCT
TTGTTCACACGTGGTGTGGAGAGCAACACGTAGATTCGGGAGGGATTGGA
GCACCCTGCCGCTGTTGATTATTTCGAGACGCCCCTGTTTCCGGGTCGCG
TACCACGTGAAGATGTTCCTGGGTTTGCGACAACACCCTGCGCGTTTATT
TTTGACGGTGTAGCAGCGTCTCCACGTCGCTTCTTGTTCGACGCACCTGT
GGGTGGTAAACTGGTAGGCCCGATGGGTGCCGGTGCTGTGCGAATTCCGA
GCTTGCAGGCCACAGAGGCCCGGGTTGGGTGAATGTTTGGCCGTGCTTAG
TCCATGGGGGCTCCGTGATATGTATATCTCGAGGTACATGGGTGCTGCCG
CGTACTCCCTTCAACCATGAAAAAAAGTATCTGCCCT back to topCoding sequence (CDS) from alignment at Scaffold_265:117264..119900- >EsuBft1050_7a-0001 ID=EsuBft1050_7a-0001|Name=EsuBft1050_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=489bp|location=Sequence derived from alignment at Scaffold_265:117264..119900- (Ectocarpus subulatus male Bft15b)
ATGATGAGGCTGTTGGCGATTGTGTGGGTGTGTTTGATGGCGGTGCTCAC
GTCTGCCCACAACCCGACGGCGGGAGGCGGAGGCGGCCACCAGGGATACT
CCCTGGGCATCCGAGACTCGATCATGATCGCTCACAGCTTTGAGGGATCG
CAGTTCGGGCCTGCCCAAGAGATGCATGGGGCGACGTACACGGTCGATGC
CGAGTTCAAGACGGAGGCCCTCGTGGAAAAGTCCAACTGGGTCGTGGACA
TAGGCGCCGCCTCGGAGATGCTCGCTGCGGTGCTGTCCAAGTACAACTTC
AAGAACCTCAACGAGATCTTCCCCGGACAAAACACAACCACCGAGTTCAT
GTGCAAGGTGATATTCGACGAGCTCGCAGCTAAGTGCGGCAAGGACTTCC
ACGGCACTCTTTGCATCAAGCTGTGGGAGAGCCACAAGGCATGGGGGTGC
TACGAGGGGGACATTGGCGAAGAGGTGGACGAGGCATGA back to top
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