Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft1050_6 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 8 |
| Length | 107 |
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-10_002330.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1050_6a-0001 ID=EsuBft1050_6a-0001|Name=EsuBft1050_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1077bp|location=Sequence derived from alignment at Scaffold_265:112368..115601+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGTCGGCCTCGTCAGGCTGTTCGCATTCACCGCCCGGCGCATGGCATT
GATAGTGGCAGCCACGTGGCATGCTTACCTGCAGAGAAAGGTCTCTGGAA
TCGTCGCCTCTGCCTTGCGAAGGCCTTTTGCCAGGCTCCAGGCAGAGCTC
ACGTCTGCCCTTCCTAGGCTGTGGGGAGCCGTCTCGAACTTGAACCCGCG
GCTGGGTCGGGTGAAGGAACTCCACCGATGCGCCATGAACGCCCGCGGCG
CCATGTGCCGCAAGGCACGTCAGCTGGATGAAACCGTTGAATGGCTGACA
GAAACGGTTTTGAATCTCGAGGCGATAATCAGCGAGACACGCCGGCTGGC
GATCATCAGCGGTGGGGCGGCTCAGCTTAACCATGTAACCACCTTGGATG
GCGGAAGAGCACGCCCGCGCTGTGGCCAGGCTTTGGGCCGAGTGCGAGGC
AAGGGATGCGGCGCTTCGAGACGAATGCGAAACAAGAATCGCGGCAGCGT
GCGCAAGAATGGCGGCCGAGATTCGGGCCGACTTCGATGCCAGGCTACTG
GCCAATGCCGACTGGAGATAGCTACAACAGGTGAACCCTTTTTACAGAAT
CACTTCACGTACGAACAAACTCAGACAACGCCAGCCGCAGGCGGAAGGCT
GAGGTTGGATCCTGAGAAACCTTGTCACCCAACTGTGCGGAGAGTACTCA
TCATGAGCGAGGTCTGCCGGCACCTACACGATGACGGCCTCAAGCACGAG
CGCCGCGGTCGTGAAAACTGCAAACTGTCCAAGAACGGGCAGGGTGCACT
GTTCACCAACACTAGTACGCTTTGCATGTGTGCGAGGGATGAGATCGCGG
TGTACCTGTCCAACGGGTCGGCAACGTCAGCTGCCTCCGAGGGTGAAGGC
ACAACGCACCTGCAGCAGCAACAGCAGCATAAGGTCCTGCCGGCTCCTGC
CGGCACCACGTCCGCGGACTCGAGGGCTGAAGCCCGTAGTGCTGCCGCCC
ACGTTGACGCGCCTCTTGCTCCGAACTGGAGCAAGCGCCACGTGGGAGCG
GCACCAAAAAGACTCGGGAAGAGATAG back to topprotein sequence of EsuBft1050_6a-0001 >EsuBft1050_6 ID=EsuBft1050_6|Name=EsuBft1050_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=358bp
MVGLVRLFAFTARRMALIVAATWHAYLQRKVSGIVASALRRPFARLQAEL
TSALPRLWGAVSNLNPRLGRVKELHRCAMNARGAMCRKARQLDETVEWLT
ETVLNLEAIISETRRLAIISGGAAQLNHVTTLDGGRARPRCGQALGRVRG
KGCGASRRMRNKNRGSVRKNGGRDSGRLRCQATGQCRLEIATTGEPFLQN
HFTYEQTQTTPAAGGRLRLDPEKPCHPTVRRVLIMSEVCRHLHDDGLKHE
RRGRENCKLSKNGQGALFTNTSTLCMCARDEIAVYLSNGSATSAASEGEG
TTHLQQQQQHKVLPAPAGTTSADSRAEARSAAAHVDAPLAPNWSKRHVGA
APKRLGKR back to topmRNA from alignment at Scaffold_265:112368..115601+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1050_6a-0001 ID=EsuBft1050_6a-0001|Name=EsuBft1050_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3234bp|location=Sequence derived from alignment at Scaffold_265:112368..115601+ (Ectocarpus subulatus male Bft15b)
ATGGTCGGCCTCGTCAGGCTGTTCGCATTCACCGCCCGGCGCATGGCATT
GATAGTGGCAGCCACGTGGCATGCTTACCTGCAGAGAAAGGTCTCTGGAA
TCGTCGCCTCTGCCTTGCGAAGGCCTTTTGCCAGGCTCCAGGCAGAGCTC
ACGTCTGCCCTTCCTAGGCTGTGGGGAGCCGTCTCGAACTTGAACCCGCG
GCTGGGTCGGGTGAAGGAACTCCACCGATGCGCCATGAACGCCCGCGGCG
CCATGTGCCGCAAGGCACGTCAGCTGGATGAAACCGTTGAATGGCTGACA
GAAACGGTTTTGAATCTCGAGGCGATAATCAGCGAGACACGCCGGCTGGT
TGCAACGGTGGAATGGCTGGCAACATAAATTGTGAACCTCCAGGCGATCA
TCAGCGGTGGGGCGGCTCAGCTTAACCATGTAACCACCTTGGTAAACGGC
CTGCTCACCGCTGCTGCCCGGGCGAGGCGAGAGCTTGACGACGCAAGGCA
GGAGGTCGTCGACGTGAAACTGCAGAGGGCCGCGGACTAGATCACATCGA
TGGCGGAGATCGATAGGATGGCGGAAGAGCACGCCCGCGCTGTGGCCAGG
CTTTGGGCCGAGTGCGAGGCAAGGGATGCGGCGCTTCGAGACGAATGCGA
AACAAGAATCGCGGCAGCGTGCGCAAGAATGGCGGCCGAGATTCGGGCCG
ACTTCGATGCCAGGCTACTGGCCAATGCCGACTGGAGATAGCTACAACAG
GTAGAGACACCAGGAGGAGGGGGTCGAGATGGCGGAGTGGGGACGTGAAG
GAGTTACTGGGACTGTAGACTGTTTGTTTGTTTGTTGTTGTCGTATTGTA
GTAGTGTTGTAGTTTGGCTCGTACCCCGTGCTGTGTGTGTGTAGCTCAGC
AATCGCTTGATGAGTGCGCTGCGCCCTCGCGGCGAGGCTCGCAGACATTT
GGCTTGGCTGCGGTCTGTTGTAAGTTTCCATGTGAAAAGAGACGCGACCG
AAGTTTCGGCAAGTGTTGCCATCAACCTCGTGGTCAATGTCCCGGGCCTT
CTTTCAGCCTTTTCTCTTTTTTTTTGTTTTGCCGCTGTGGAAGAATATGA
TCTACGTAACAAACAGCTTGTGCGAAAGGTTTCGTTTGCACAAAGCTCAC
ACGTGGTGTGCGATACTCGCGCCCGCTCGTATCCCCAAGGTAGCAGGGGA
AAAGATTAGTCCGTGCGACGGAGCATATTGACGTTTGACGTTTTCGTGTA
GTGCTGCAGTCCTCCTTGTTGAAGCGACAGATCAACAGCTCATCTACACG
TCATGCAAGCCATCGTGCGCAACGGTACTTCGACGCACACACGACCACAC
ACGAACCACGACTTCGCTCGCTATCTTTATGGCTCTTATTTCCTATTTTG
CCACATTTTGATGGCACGGTTGTGATATACCAGAAGGCCGTTTGTGGGAA
ACGTATTGACAAGGTGCCGCGCTCGTCGTGCCCTAGGCTACATAATGTAC
AATCAATCGTCCTCCTCGTCGTTGCCCATTAAGTGGTCCGAAAGCTAATC
TCAGGTCCCGAGTGTGACACGGATTTCTTAGCGCACTTGGTACACCACTT
TTTTTCCGACAAACGCCGACGAGGGAAGGATGTTCGCCGTCTCCCTTGCT
GCAAGAATTGCAAAACAAACACCGCGGCGGATACAAGGTTCTGTGTGGTT
TCGACTGGAACACGCCTTGACCCCGGCGTTTGGAAAGGACTGGGACATAA
AACCAATCACGATCCGATGAACACACTGTGTAAGCAGCCTGGACAACAGT
TCAGACGTATTGGTTTACTGCCTTGACTGACTGCAACTTCACATCGTGTC
TGCACACACACGCGCGAACAATCACACTTGCACAGCGCAGACATGTAGTA
ACAATTCTGTTCTATCGTTGTTTGTCCGCGCCTTCGCAGACCGTGCAAAC
TTGCTGACAGTAACCAATCCCACTACCTCATTTCCTGTTCGCTCCAAAAA
CTCCTCCGGGGCCACAGGTGAACCCTTTTTACAGAATCACTTCACGTACG
AACAAACTCAGACAACGCCAGCCGCAGGCGGAAGGCTGAGGTTGGATCCT
GAGAAACCTTGTCACCCAACTGTGCGGAGAGTACTCATCATGAGCGAGGT
CTGCCGGCACCTACACGATGACGGCCTCAAGCACGAGCGCCGCGGTCGTG
AAAACTGCAAACTGTCCAAGAACGGGCAGGGTGACACGTGACGACGCGCT
GGAGTCGTCCCCCTCCGGAGGCGAATTGGGTGGAGGAGGGGGGGGGGGCA
TCAACACCAAGAAACAGGTGCACTGTTCACCAACACTAGTACGCTTTGCA
TGTGTGCGAGGGATGAGATCGCGGTGTACCTGTCCAACGGGTCGGCAACG
TCAGCTGCCTCCGAGGGTGAAGGCACAACGCACCTGCAGCAGCAACAGCA
GCATAAGGTCCTGCCGGCTCCTGCCGGCACCACGTCCGCGGACTCGAGGG
CTGAAGCCCGTAGTGCTGCCGCCCACGTTGACGCGCCTCTTGCTCCGAAC
TGGAGCAAGCGTACGCGCCCAACAACAGGATATGTAAGTGTTAGGGTTTT
GCCAAATATTCGTCCTTGCCCTGGTGATGTGATGTACGAGGCGCGTTTGC
CGGCGCCACATACACGGCGTCTGACATTCTTACCCAGAGCGTAGTTCGGG
CGAGAGTGGCAACCTTTCCAGGGCACCTCGAGGTCTGATTTTACTTCCCG
TAGGCCACGTGGGAGGTGAGTGCCTTTTGCGGGATCATTTCTCCAATGAC
TATCGTTCGAGAATGCTGAAAAGCTGCACGACCAGGCCGGCTGTGTGTCA
TGTATGTCGTCCATGTTCAGCGAAGCACGTTCACGCCCTTGCTCCTACGC
TGTTATTGCGCGTCTCTTGTGTTTCTCTGGCTGGGCCCTAGATGGGGCGT
ATTGACCCGGCGTCGTGTGGTCCAGCGAAACAACCAGACTACACGTCAAC
AGCGGCACCAAAAAGACTCGGGTGAGTCAATTAGCATATCACACATAGCA
CTCCCGTCTCGTCGACCTACCCCACCGTCGTGTTGAAAATGGGTAGCTAG
TCATCTCATGTTGGTGCTGTGGGTGTGACATTGTGACGCGCGCCTCAGTG
GTGAGCTTTGCCATACGAACAGGGTCACACGCTTGTTATGTATGGGACAA
AAGGACGCCAACAACGCAACGCAGGAAGAGATAG back to topCoding sequence (CDS) from alignment at Scaffold_265:112368..115601+ >EsuBft1050_6a-0001 ID=EsuBft1050_6a-0001|Name=EsuBft1050_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1077bp|location=Sequence derived from alignment at Scaffold_265:112368..115601+ (Ectocarpus subulatus male Bft15b)
ATGGTCGGCCTCGTCAGGCTGTTCGCATTCACCGCCCGGCGCATGGCATT
GATAGTGGCAGCCACGTGGCATGCTTACCTGCAGAGAAAGGTCTCTGGAA
TCGTCGCCTCTGCCTTGCGAAGGCCTTTTGCCAGGCTCCAGGCAGAGCTC
ACGTCTGCCCTTCCTAGGCTGTGGGGAGCCGTCTCGAACTTGAACCCGCG
GCTGGGTCGGGTGAAGGAACTCCACCGATGCGCCATGAACGCCCGCGGCG
CCATGTGCCGCAAGGCACGTCAGCTGGATGAAACCGTTGAATGGCTGACA
GAAACGGTTTTGAATCTCGAGGCGATAATCAGCGAGACACGCCGGCTGGC
GATCATCAGCGGTGGGGCGGCTCAGCTTAACCATGTAACCACCTTGGATG
GCGGAAGAGCACGCCCGCGCTGTGGCCAGGCTTTGGGCCGAGTGCGAGGC
AAGGGATGCGGCGCTTCGAGACGAATGCGAAACAAGAATCGCGGCAGCGT
GCGCAAGAATGGCGGCCGAGATTCGGGCCGACTTCGATGCCAGGCTACTG
GCCAATGCCGACTGGAGATAGCTACAACAGGTGAACCCTTTTTACAGAAT
CACTTCACGTACGAACAAACTCAGACAACGCCAGCCGCAGGCGGAAGGCT
GAGGTTGGATCCTGAGAAACCTTGTCACCCAACTGTGCGGAGAGTACTCA
TCATGAGCGAGGTCTGCCGGCACCTACACGATGACGGCCTCAAGCACGAG
CGCCGCGGTCGTGAAAACTGCAAACTGTCCAAGAACGGGCAGGGTGCACT
GTTCACCAACACTAGTACGCTTTGCATGTGTGCGAGGGATGAGATCGCGG
TGTACCTGTCCAACGGGTCGGCAACGTCAGCTGCCTCCGAGGGTGAAGGC
ACAACGCACCTGCAGCAGCAACAGCAGCATAAGGTCCTGCCGGCTCCTGC
CGGCACCACGTCCGCGGACTCGAGGGCTGAAGCCCGTAGTGCTGCCGCCC
ACGTTGACGCGCCTCTTGCTCCGAACTGGAGCAAGCGCCACGTGGGAGCG
GCACCAAAAAGACTCGGGAAGAGATAG back to top
|