Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FZS4 |
| ProteomeId | EsuBft1050_5 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 73 |
| Hectar predicted targeting category | other localisation |
| Evalue | 8.25e-34 |
| EggNOG OGs | 2D50F@1|root,2SWWM@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1050_5a-0001 ID=EsuBft1050_5a-0001|Name=EsuBft1050_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=731bp|location=Sequence derived from alignment at Scaffold_265:98584..99675+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGAGACAGGCGTCCGCCATCTTGACCTTCGTGTCGCTAGAGATTGCTGA
TGGACTTCACCCCATCAAGCACAGCGAGGTTGCGGCGCTTCCGGTCGGCG
TGACCGGTAAAGTGGTTCGGGCGTGGGTGCGTGATTTTGTCAACGGCAAG
AGGTTCAAGGTTCGCGTGCGGGACTACGCTGCTCGCAACCTGCTCTCGGT
AATCAACGACGAGGACTTTCGCGAAGAGTCGCGCGAGTGGCTGGACGCCA
AGATATACGGCCGCAAGGAGGGGGAGCCGCAGCTACGTGTTCGGGACTTC
CAGAAGCATCTCAACGACACCGCGCTCAAGCCTTACATGGAAGAGGGTGC
GCGGGGAAATTGCCTCGACACGGTGCACAGATGGCTGCAGGACTTGGGCT
TCCGTTGGCGGCGACACCGAAAGTGTGTCTACGCAGACGGTCACAACCGC
CCCGACAACATCAGGAGGAGGATGGGTTACGTGACGGAGATGCAGGAGCA
CCAGAAGCGTACAGTCAAGTGCGTATTGAATTTGTGGTGTGATTGGGTCT
GCAATGTTTCCGATTTCGTGTAAGGTTTCCACCGTGGAACCGACAACTTA
CTTTTTTTTCAAGTTTAGATGTCGTTCAAGTTTGAGCATTTACGCGAACA
TACAACCTTGCGCAGGGACCTCTTGTTTAATCTCTCGTCCCGCCACCTTG
ACCTGCAGGCTCGCAAAGATCGGTGAGGGCC back to topprotein sequence of EsuBft1050_5a-0001 >EsuBft1050_5 ID=EsuBft1050_5|Name=EsuBft1050_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=190bp
MRQASAILTFVSLEIADGLHPIKHSEVAALPVGVTGKVVRAWVRDFVNGK
RFKVRVRDYAARNLLSVINDEDFREESREWLDAKIYGRKEGEPQLRVRDF
QKHLNDTALKPYMEEGARGNCLDTVHRWLQDLGFRWRRHRKCVYADGHNR
PDNIRRRMGYVTEMQEHQKRTVKCVLNLWCDWVCNVSDFV back to topmRNA from alignment at Scaffold_265:98584..99675+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1050_5a-0001 ID=EsuBft1050_5a-0001|Name=EsuBft1050_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1092bp|location=Sequence derived from alignment at Scaffold_265:98584..99675+ (Ectocarpus subulatus male Bft15b)
ATGAGACAGGCGTCCGCCATCTTGACCTTCGTGTCGCTAGAGTAAGTTAT
GTTTTTCGCGTGTGTGATGGATGCGTGCTACAGCAGTGGGTACGCAAACA
GTTTACAACCCGCTAAATTCCACGTTGTCGAATACGCATCCCCTGAATTA
GTCACGACTATCTTGCCAAATGTGTTTGCGTTTGGCGGACCAGGATTGCT
GATGGACTTCACCCCATCAAGCACAGCGAGGTTGCGGCGCTTCCGGTCGG
CGTGACCGGTAAAGTGGTTCGGGCGTGGGTGCGTGATTTTGTCAACGGCA
AGAGGTTCAAGGTTCGCGTGCGGGACTACGCTGCTCGCAACCTGCTCTCG
GTAATCAACGACGAGGACTTTCGCGAAGAGTCGCGCGAGTGGCTGGACGC
CAAGATATACGGCCGCAAGGAGGGGGAGCCGCAGCTACGTGTTCGGGACT
TCCAGAAGTGAGTATGGAATGTAAACAACGTCATGGTTAGGATTCTATTT
CAGAGTTTGTCGGTTGGCGATTAGCGATGCATGCTGGTGTCGAAACATTC
CCACGATTTGCAATAGATGTTTACATCCCAGGTCGTTGAAAGATATGCAG
AAGAACCGTGTGTCGATTGTTGCACAGCAACTTATGTTGCACCATTATTT
TTGATCAAAATCGCAGGCATCTCAACGACACCGCGCTCAAGCCTTACATG
GAAGAGGGTGCGCGGGGAAATTGCCTCGACACGGTGCACAGATGGCTGCA
GGACTTGGGCTTCCGTTGGCGGCGACACCGAAAGTGTGTCTACGCAGACG
GTCACAACCGCCCCGACAACATCAGGAGGAGGATGGGTTACGTGACGGAG
ATGCAGGAGCACCAGAAGCGTACAGTCAAGTGCGTATTGAATTTGTGGTG
TGATTGGGTCTGCAATGTTTCCGATTTCGTGTAAGGTTTCCACCGTGGAA
CCGACAACTTACTTTTTTTTCAAGTTTAGATGTCGTTCAAGTTTGAGCAT
TTACGCGAACATACAACCTTGCGCAGGGACCTCTTGTTTAATCTCTCGTC
CCGCCACCTTGACCTGCAGGCTCGCAAAGATCGGTGAGGGCC back to topCoding sequence (CDS) from alignment at Scaffold_265:98584..99675+ >EsuBft1050_5a-0001 ID=EsuBft1050_5a-0001|Name=EsuBft1050_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=573bp|location=Sequence derived from alignment at Scaffold_265:98584..99675+ (Ectocarpus subulatus male Bft15b)
ATGAGACAGGCGTCCGCCATCTTGACCTTCGTGTCGCTAGAGATTGCTGA
TGGACTTCACCCCATCAAGCACAGCGAGGTTGCGGCGCTTCCGGTCGGCG
TGACCGGTAAAGTGGTTCGGGCGTGGGTGCGTGATTTTGTCAACGGCAAG
AGGTTCAAGGTTCGCGTGCGGGACTACGCTGCTCGCAACCTGCTCTCGGT
AATCAACGACGAGGACTTTCGCGAAGAGTCGCGCGAGTGGCTGGACGCCA
AGATATACGGCCGCAAGGAGGGGGAGCCGCAGCTACGTGTTCGGGACTTC
CAGAAGCATCTCAACGACACCGCGCTCAAGCCTTACATGGAAGAGGGTGC
GCGGGGAAATTGCCTCGACACGGTGCACAGATGGCTGCAGGACTTGGGCT
TCCGTTGGCGGCGACACCGAAAGTGTGTCTACGCAGACGGTCACAACCGC
CCCGACAACATCAGGAGGAGGATGGGTTACGTGACGGAGATGCAGGAGCA
CCAGAAGCGTACAGTCAAGTGCGTATTGAATTTGTGGTGTGATTGGGTCT
GCAATGTTTCCGATTTCGTGTAA back to top
|