EsuBft4056_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft4056_2a-0001
Unique NameEsuBft4056_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_265contigScaffold_265:73404..74999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog102129.Lepto7375DRAFT_7442
ProteomeIdEsuBft4056_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2|Bacteria
Length88
Hectar predicted targeting categoryother localisation
Evalue8.54e-08
EggNOG OGsCOG2813@1|root,COG2813@2|Bacteria,1GAGN@1117|Cyanobacteria,1HHWT@1150|Oscillatoriales
Date last modified2016-06-15
Date creation2016-06-15
DescriptionSpecifically methylates the guanine in position
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft4056_2aEsuBft4056_2aEctocarpus subulatus male Bft15bgeneScaffold_265 73404..74999 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4056_2a-0001-exonagat-exon-11134Ectocarpus subulatus male Bft15bexonScaffold_265 73404..73914 +
EsuBft4056_2a-0001-exonEsuBft4056_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_265 74626..74999 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4056_2a-0001-exonagat-five_prime_utr-9584Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_265 73404..73411 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4056_2a-0001-cdsEsuBft4056_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_265 73412..73914 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4056_2a-0001-exonagat-three_prime_utr-15072Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_265 74978..74999 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4056_2a-0001EsuBft4056_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_265 73412..74977 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft4056_2a-0001 ID=EsuBft4056_2a-0001|Name=EsuBft4056_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=885bp|location=Sequence derived from alignment at Scaffold_265:73404..74999+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GAAACATCATGGAAGGACGGCCCACCAGCAGCACCAGCAAGACGTGCGAC
GCGTGTCTTCGAGAAGACGACGAAGCAGGGTATCGGCAGCTGAGGCCAAG
GACCATGAGCATGTTGCGGGCTTTCGTTCGTAATGCTGGACTGGCGGAGA
AGTTCCCCGGCGTGATGCCTCTTGGTGTCGGTATAGATTCCTTGGTTCTA
TGCAAACGTGCTGAATGTGTTTTGAAGCAATACGACAAGCATATGTCGGA
CTTGTGTCACGACCGAGCGCGTAAGAAAGAGAAACGCAACCGTAGCGAAG
CTGCAACTTGGACTTCCGCACCTGAGCCCGCAGTGCATCTGAAACGGCGA
CACTTGGACCGCTACTGTACATCGATCGTGGCGGTGGAGGCGTTGCTTGA
TGCTGTCAACGTCAGCGGCAGGGTGTTGGATATGTGTGGGGGGCCGGATG
ATGCCGTGGCACGGAGACTTCGAGACACGTGTGAGGTGGTAACGAACGAC
GTGAGTAGCAGCCTCGACGCAAGCAAGAGTACTTTCGCGGCGGATTTCCT
GGCAGACGGGTTTGAACAGCAACCTGAATGGGTGGTGACAAGCCCCCCCT
ACAAGGGGGCTGTCAAATTTGGGAAGGCGGCTCTATCTGTAGCCAAACAT
GGTGTGACGCTCAAACTACCCCTTTCCTTTCTGGAGCCTTGTGTAGATCG
GGCAGACTGGCTGGAGGCAAACCCCCCGACTGTTTGCGTGTTTTTAAGGA
GGGCCAGCTACACGCCTGAGCACATAATGATGGGGGAATTTTGGGGGGTA
TGGTACTGCACGGGTGGTGACCGAACGGCGGTGGGTGGTACAAAGCTTGT
GTTCCGTGCTTGATGTTGAACACGGTTGGGATGTT
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protein sequence of EsuBft4056_2a-0001

>EsuBft4056_2 ID=EsuBft4056_2|Name=EsuBft4056_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=284bp
MEGRPTSSTSKTCDACLREDDEAGYRQLRPRTMSMLRAFVRNAGLAEKFP
GVMPLGVGIDSLVLCKRAECVLKQYDKHMSDLCHDRARKKEKRNRSEAAT
WTSAPEPAVHLKRRHLDRYCTSIVAVEALLDAVNVSGRVLDMCGGPDDAV
ARRLRDTCEVVTNDVSSSLDASKSTFAADFLADGFEQQPEWVVTSPPYKG
AVKFGKAALSVAKHGVTLKLPLSFLEPCVDRADWLEANPPTVCVFLRRAS
YTPEHIMMGEFWGVWYCTGGDRTAVGGTKLVFRA
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mRNA from alignment at Scaffold_265:73404..74999+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft4056_2a-0001 ID=EsuBft4056_2a-0001|Name=EsuBft4056_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1596bp|location=Sequence derived from alignment at Scaffold_265:73404..74999+ (Ectocarpus subulatus male Bft15b)
GAAACATCATGGAAGGACGGCCCACCAGCAGCACCAGCAAGACGTGCGAC
GCGTGTCTTCGAGAAGACGACGAAGCAGGGTATCGGCAGCTGAGGCCAAG
GACCATGAGCATGTTGCGGGCTTTCGTTCGTAATGCTGGACTGGCGGAGA
AGTTCCCCGGCGTGATGCCTCTTGGTGTCGGTATAGATTCCTTGGTTCTA
TGCAAACGTGCTGAATGTGTTTTGAAGCAATACGACAAGCATATGTCGGA
CTTGTGTCACGACCGAGCGCGTAAGAAAGAGAAACGCAACCGTAGCGAAG
CTGCAACTTGGACTTCCGCACCTGAGCCCGCAGTGCATCTGAAACGGCGA
CACTTGGACCGCTACTGTACATCGATCGTGGCGGTGGAGGCGTTGCTTGA
TGCTGTCAACGTCAGCGGCAGGGTGTTGGATATGTGTGGGGGGCCGGATG
ATGCCGTGGCACGGAGACTTCGAGACACGTGTGAGGTGGTAACGAACGAC
GTGAGTAGCAGGTGCTTTTTTGTAGTTTTAAGGACTGAGGATGGTGCTCG
TAAGAATACATTTTTACTTTTCTACGTAGACGAACGCGGAAATATGCGAC
CGTGAGTTTGCAGCTGTGATGGCATTTTGCCAACGGCGTTTTTAGCACGA
ATCTATCACGTGTATTTTTTGCTGGTGTTGCAGTTTTGGTCTATCAAAAT
CAACAAGTACGGATGGGCACTCAACAGCAGGGATATGGGGGTACTCGGAG
AACAGAGGCAGAGGACCTATGTTGCAACCCTATCGCGAGCAGTATGGCCT
TTTTATCTTGACCGTCGATCCTCTCTCCCGAAAGCTTGATATGCGGCCTC
CTTGGCCCTTTTTTTTGTTGCAGGTTGTCACCTGTGTGTGATAAAGGCTT
ACCCCATTAGACTACGAAGTCAGCGGCTGACTTAGTAGTCTAGACTACTG
GGGTAAGCCTTTCTCACACAAAGGATACACGCACAGGTTCGAATCCCGGG
CTGATCACTTTACGAAAAGCACCATAGCTCTGTTCTCGGCAGCGCCTGGC
GAGGGGTCCGTCCCCGGAGATTTCTACTCACAGCCCGGGGTTCTACGAGC
CGAGAGTGTATCTTTTGATAGTTAAAGGCGTACCCATTAGACTACTCAGT
CAGCGCTGACTAAGTAGTCTAATGGGTAAGCCTTTACTAACAACCTGATG
CTCGGCGTGCCCCGGACACTAGCCTCGACGCAAGCAAGAGTACTTTCGCG
GCGGATTTCCTGGCAGACGGGTTTGAACAGCAACCTGAATGGGTGGTGAC
AAGCCCCCCCTACAAGGGGGCTGTCAAATTTGGGAAGGCGGCTCTATCTG
TAGCCAAACATGGTGTGACGCTCAAACTACCCCTTTCCTTTCTGGAGCCT
TGTGTAGATCGGGCAGACTGGCTGGAGGCAAACCCCCCGACTGTTTGCGT
GTTTTTAAGGAGGGCCAGCTACACGCCTGAGCACATAATGATGGGGGAAT
TTTGGGGGGTATGGTACTGCACGGGTGGTGACCGAACGGCGGTGGGTGGT
ACAAAGCTTGTGTTCCGTGCTTGATGTTGAACACGGTTGGGATGTT
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Coding sequence (CDS) from alignment at Scaffold_265:73404..74999+

>EsuBft4056_2a-0001 ID=EsuBft4056_2a-0001|Name=EsuBft4056_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=855bp|location=Sequence derived from alignment at Scaffold_265:73404..74999+ (Ectocarpus subulatus male Bft15b)
ATGGAAGGACGGCCCACCAGCAGCACCAGCAAGACGTGCGACGCGTGTCT
TCGAGAAGACGACGAAGCAGGGTATCGGCAGCTGAGGCCAAGGACCATGA
GCATGTTGCGGGCTTTCGTTCGTAATGCTGGACTGGCGGAGAAGTTCCCC
GGCGTGATGCCTCTTGGTGTCGGTATAGATTCCTTGGTTCTATGCAAACG
TGCTGAATGTGTTTTGAAGCAATACGACAAGCATATGTCGGACTTGTGTC
ACGACCGAGCGCGTAAGAAAGAGAAACGCAACCGTAGCGAAGCTGCAACT
TGGACTTCCGCACCTGAGCCCGCAGTGCATCTGAAACGGCGACACTTGGA
CCGCTACTGTACATCGATCGTGGCGGTGGAGGCGTTGCTTGATGCTGTCA
ACGTCAGCGGCAGGGTGTTGGATATGTGTGGGGGGCCGGATGATGCCGTG
GCACGGAGACTTCGAGACACGTGTGAGGTGGTAACGAACGACGTGAGTAG
CAGCCTCGACGCAAGCAAGAGTACTTTCGCGGCGGATTTCCTGGCAGACG
GGTTTGAACAGCAACCTGAATGGGTGGTGACAAGCCCCCCCTACAAGGGG
GCTGTCAAATTTGGGAAGGCGGCTCTATCTGTAGCCAAACATGGTGTGAC
GCTCAAACTACCCCTTTCCTTTCTGGAGCCTTGTGTAGATCGGGCAGACT
GGCTGGAGGCAAACCCCCCGACTGTTTGCGTGTTTTTAAGGAGGGCCAGC
TACACGCCTGAGCACATAATGATGGGGGAATTTTGGGGGGTATGGTACTG
CACGGGTGGTGACCGAACGGCGGTGGGTGGTACAAAGCTTGTGTTCCGTG
CTTGA
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